BAC Information

Click to search

BAC

Clone NameB6Ng01-232M23
Chromosome5 (Build37)
Map Location 30,255,868 - 30,256,981
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662
Downstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232M23.bB6Ng01-232M23.g
ACCGA045050GA045051
length9261,118
definitionB6Ng01-232M23.b B6Ng01-232M23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtttagctctgtacctcatttttaaatcgagttatttgaattg
atgtctaacttcatgagttctctatatattttggatattagctttcagtc
aggtatagggttgatgaagatcttttcacaatctgtaggctgttatttca
tcctaatgacagtctcctttgatttacagaaaattttcaatttcataagg
tcccatttatcaattattgatcttacagcatgggccattggttcaggaag
ttgtctgctgtaccaatgagttcaaagttattccttattttctgttctat
tagatttagtgtatctggtttgtgttgaggcctttgatccacttagatgt
gagttttgtgcagggtgatgaatgtggatctatttgcattcttctacttt
tagacattcagttagaccaacaccatttgctgaagatgctctcccttttc
cattgtatggttttgtcaaaaatcagtgtctgtaggtgtgtgggtttatt
tctggatcttcaacttgattccattgatcaacctgtctgtttctatgcca
tagccatccagtttgtattactaatgctctgtagtacaacttgagatcag
ggatggagatacctctagaagttcttctattgaacaggactttttagata
tcctggaatttttgtttttcaatattaagttgaaaattgttctttcaggg
cctgtaatgaaattctgttagaatgttgatgggaattgcattgaatctgt
agattgctttttggtaagatgggctattcttactatgttaatctactgat
ccatgagcatgggtgaccttttcatcttcagatcttcttcaatttatttt
ttcagggagtttgaagttctggtcatactgtgggaactaaagggtgttag
ggggaaagggggcagggaggatagtc
gaattccaatttcctgagtgttttagaatagttatgaaatcattgctcaa
tgaaaaaaaagagcttttctctatgcttttttaaagaattaaaaatatta
aacttttatttattgaattcattttgaggggtacttatatgccacaatac
atgtgtggaggtttgaaggcaccctgaagatatcattgcttttctactgc
catgtagattcaatgagtcaaacacaagtccttgagcttggcagcaagcg
cctttgctcactgagtcaccttgctggctcttttctagcattttaaatta
ttctgggtctcatatttcagtctttaacccatcttgtgtttatttctatg
tctgctgtaagattatggtatagcttgtttcttttcttttatacggtgca
taagtgcacatgtgctatatgttcacatgtataccatgcactgccagtaa
gagaacaccttcaggtgtttcttagaaacagctcatcttcaacttgtatt
tgaagacagggctgtcaccagcttgtagctagactgtccgggcatggtgg
cgcacgcctttaatcccagcacttgggaggcagaggcaggcagatttctg
agtttggggccagcctggtctacagagtgagttccaggacagccagagct
acacagagaaactctgtctcgaaaaaccaaaaaaagaaaaaaaaaaaaaa
aaaaagaaatgagaaaaaagagaaaatgctaatttcaagcacagtgagaa
aaaatcatcaatagcatttccactatatttgttgaacataattttattat
tttttattagatattttctttgtgtacatttcaaatgctatcccgaaagt
tctctataccctcccccgcttcctgctcccctacccacccactcccactc
cttggtcctggcatttcccctgtactggggcattataaagtgtgcaagga
cctagggccttctaatcccaatgatggccaatctagaccatcttctgcta
catattgcagctagagacccaagctctggggttactggtttagttcatat
gtgtccacctaataggtttgcagaccccttcagaataattcaacaacaga
atagtatttaagaaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_30255868_30256981
seq2: B6Ng01-232M23.g_67_1184

seq1  GAATTCCAATTTCCTGAGTGTTTTAGAATAGTTATGAAATCATTGCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTTCCTGAGTGTTTTAGAATAGTTATGAAATCATTGCTCAA  50

seq1  TGAAAAAAAAGAGCTTTTCTCTATGCTTTTTTAAAGAATTAAAAATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAGAGCTTTTCTCTATGCTTTTTTAAAGAATTAAAAATATTA  100

seq1  AACTTTTATTTATTGAATTCATTTTGAGGGGTACTTATATGCCACAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTATTTATTGAATTCATTTTGAGGGGTACTTATATGCCACAATAC  150

seq1  ATGTGTGGAGGTTTGAAGGCACCCTGAAGATATCATTGCTTTTCTACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGAGGTTTGAAGGCACCCTGAAGATATCATTGCTTTTCTACTGC  200

seq1  CATGTAGATTCAATGAGTCAAACACAAGTCCTTGAGCTTGGCAGCAAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGATTCAATGAGTCAAACACAAGTCCTTGAGCTTGGCAGCAAGCG  250

seq1  CCTTTGCTCACTGAGTCACCTTGCTGGCTCTTTTCTAGCATTTTAAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTCACTGAGTCACCTTGCTGGCTCTTTTCTAGCATTTTAAATTA  300

seq1  TTCTGGGTCTCATATTTCAGTCTTTAACCCATCTTGTGTTTATTTCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTCTCATATTTCAGTCTTTAACCCATCTTGTGTTTATTTCTATG  350

seq1  TCTGCTGTAAGATTATGGTATAGCTTGTTTCTTTTCTTTTATACGGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTAAGATTATGGTATAGCTTGTTTCTTTTCTTTTATACGGTGCA  400

seq1  TAAGTGCACATGTGCTATATGTTCACATGTATACCATGCACTGCCAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCACATGTGCTATATGTTCACATGTATACCATGCACTGCCAGTAA  450

seq1  GAGAACACCTTCAGGTGTTTCTTAGAAACAGCTCATCTTCAACTTGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACCTTCAGGTGTTTCTTAGAAACAGCTCATCTTCAACTTGTATT  500

seq1  TGAAGACAGGGCTGTCACCAGCTTGTAGCTAGACTGTCCGGGCATGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGGGCTGTCACCAGCTTGTAGCTAGACTGTCCGGGCATGGTGG  550

seq1  CGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTG  600

seq1  AGTTTGGGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCT  650

seq1  ACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAGAAAAAAAAAAAAAA  700
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAACTCTGTCTCGAAAAACCAAAAAAAGAAAAAAAAAAAAAA  700

seq1  AAAAAGAAATGAGAAAAAAGAGAAAATGCTAATTTCAAGCACAGTGAG-A  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAAAGAAATGAGAAAAAAGAGAAAATGCTAATTTCAAGCACAGTGAGAA  750

seq1  AAAATCATCAATAGCATTTCCACTATATTTGTTGAACATAATTTTATTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATCAATAGCATTTCCACTATATTTGTTGAACATAATTTTATTAT  800

seq1  TTTTTATTAGATATTTTCTTTGTGTACATTTCAAATGCTATCCCGAAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTAGATATTTTCTTTGTGTACATTTCAAATGCTATCCCGAAAGT  850

seq1  TCTCTATACCCTCCCCCGCTCCCTGCTCCCCTACCCACCCACTCCCACTC  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTCTATACCCTCCCCCGCTTCCTGCTCCCCTACCCACCCACTCCCACTC  900

seq1  CTTGGTCCTGGCA-TTCCCCTGTACTGGGGCA-TATAAAGTGTGCAA-GA  946
      ||||||||||||| |||||||||||||||||| |||||||||||||| ||
seq2  CTTGGTCCTGGCATTTCCCCTGTACTGGGGCATTATAAAGTGTGCAAGGA  950

seq1  CCTAGGGGCCTCTTATCCCAATGATGGCCAA-CTAGACCATCTTCTGCTA  995
      ||||||| | ||| ||||||||||||||||| ||||||||||||||||||
seq2  CCTAGGGCCTTCTAATCCCAATGATGGCCAATCTAGACCATCTTCTGCTA  1000

seq1  CATA-TGCAGCTAGAGACACAAGCTCTGGGGGTACTGG-TTAGTTCATAT  1043
      |||| ||||||||||||| |||||||||||| |||||| |||||||||| 
seq2  CATATTGCAGCTAGAGACCCAAGCTCTGGGGTTACTGGTTTAGTTCATA-  1049

seq1  TGTTGTTCCACCT-ATAGGGTTGCAGACCCCTTCAGA--TATTCAACAAA  1090
      |||   ||||||| ||||| |||||||||||||||||   ||||||| ||
seq2  TGT--GTCCACCTAATAGGTTTGCAGACCCCTTCAGAATAATTCAAC-AA  1096

seq1  CAGAATAGTTATTTTAAGAAATAC  1114
      |||||||||   ||||||||||||
seq2  CAGAATAGT--ATTTAAGAAATAC  1118