BAC Information

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BAC

Clone NameB6Ng01-233J24
Chromosome5 (Build37)
Map Location 140,269,476 - 140,431,695
singlet/doubletdoublet
Overlap geneMafk, BC019731, 1810042K04Rik, A930017N06Rik
Upstream geneBC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1
Downstream geneLOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233J24.bB6Ng01-233J24.g
ACCGA045626GA045627
length792875
definitionB6Ng01-233J24.b B6Ng01-233J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,269,476 - 140,270,263)(140,430,816 - 140,431,695)
sequence
gaattctctgtgtggccgatctctggagctataaacagtgactcattctc
ccgccccaccctccctgtcccctgctccgctccgggaagatgcctggtca
ctcatatttacttttgctttttataagtcacacacatgcgttctgtttcc
tctttcctgcagtttcaggaaactgaaagtgttatctgaaaacctataga
gtttcacagaggtagacctgagccccagtgatcaaacaccacactgcttg
gtgttggggaggatactacagccttgcttgcttgatggcctggcctgagg
tcagaggtcagggttagaggataggggctgttgtgtctgatgacacacct
gtcagctcttccttggggctgtctggtatggtagggggagagcacacacc
ctccgctcagcttccttttttgtctgagtccccgcctctgtctgtctata
aaacagaccttgataccctgaaggagctggtatcagcaacacacgctctc
tgcttaacagaagtttgattgtgcatggaagctgctgaaagaatgttcta
gaaccaggtctaggtccagggaaaaggctgacttttccaaagacagcaat
taggagggctttcaggaagaagtggaagtttgaggctagagttggagacc
ccatatccatcatagccaggaacactcaccagccaaagaaggaagcccag
acagggaagctcagaagggcaccccaagacctatgttatctgtgggacta
gtcctgaggcaccaagatcagagttggggatctggtacacca
gaattcacctctgttcagaggtcaacagcatacagtcattccgtaagtct
aaagggactgttcccattttacagatggtaagcataaaggctaattctcc
tgcctgggttcccacaacagtgaggtcagagttcaggagcagagcctatg
aataacctaaggtcacatggcctgcaggttgacagagtgagatcaagggt
gaatgggcaaccccttagggataaagcagagaggctcatggttaatggga
aaaattagggggctgcctaggacctggaatccacagagcatgttcagggc
cacagccccaggccgaaggtgagtactgacttctccaagcctgcttgatg
aatggggcacccgcacacctgggtggaaaaactacaggaaaagacacccg
cgtctgtgagcagagagcccaggccaagtctaatccctgccgatgctgga
agaggtgtgggagggtgcacacactggtttgttcagaatgcacagagagg
gaccccaggagtcttcggagaatcgggaggaagtagtacagggcgtatcc
actgtggactactatatggcgatgaaatggagcgcacatcgcagccagaa
ggacaccactgagcacacctgtttagttactgtcccgcatgtcagagttt
cagaatttgcagcagcggtatcctttgctgggctggggtacatataaatg
taaaagtgtgtgggaatacaaatcacaaaaggaaggaagggggaggggct
cagtggggccccagtggctgtgggggaaggtccgcagtgcaggggcctgg
ggagatggcttaatggtaaagcgccgccacacaagcaagatctgatttca
gtcttggaactcgagttaagccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_140269476_140270263
seq2: B6Ng01-233J24.b_46_837

seq1  GAATTCTCTGTGTGGCCGATCTCTGGAGCTATAAACAGTGACTCATTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGTGGCCGATCTCTGGAGCTATAAACAGTGACTCATTCTC  50

seq1  CCGCCCCACCCTCCCTGTCCCCTGCTCCGCTCCGGGAAGATGCCTGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCACCCTCCCTGTCCCCTGCTCCGCTCCGGGAAGATGCCTGGTCA  100

seq1  CTCATATTTACTTTTGCTTTTTATAAGTCACACACATGCGTTCTGTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTTACTTTTGCTTTTTATAAGTCACACACATGCGTTCTGTTTCC  150

seq1  TCTTTCCTGCAGTTTCAGGAAACTGAAAGTGTTATCTGAAAACCTATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTGCAGTTTCAGGAAACTGAAAGTGTTATCTGAAAACCTATAGA  200

seq1  GTTTCACAGAGGTAGACCTGAGCCCCAGTGATCAAACACCACACTGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACAGAGGTAGACCTGAGCCCCAGTGATCAAACACCACACTGCTTG  250

seq1  GTGTTGGGGAGGATACTACAGCCTTGCTTGCTTGATGGCCTGGCCTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGGGAGGATACTACAGCCTTGCTTGCTTGATGGCCTGGCCTGAGG  300

seq1  TCAGAGGTCAGGGTTAGAGGATAGGGGCTGTTGTGTCTGATGACACACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTCAGGGTTAGAGGATAGGGGCTGTTGTGTCTGATGACACACCT  350

seq1  GTCAGCTCTTCCTTGGGGCTGTCTGGTATGGTAGGGGGAGAGCACACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTCTTCCTTGGGGCTGTCTGGTATGGTAGGGGGAGAGCACACACC  400

seq1  CTCCGCTCAGCTTCCTTTTTTGTCTGAGTCCCCGCCTCTGTCTGTCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCTCAGCTTCCTTTTTTGTCTGAGTCCCCGCCTCTGTCTGTCTATA  450

seq1  AAACAGACCTTGATACCCTGAAGGAGCTGGTATCAGCAACACACGCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACCTTGATACCCTGAAGGAGCTGGTATCAGCAACACACGCTCTC  500

seq1  TGCTTAACAGAAG-TTGATTGTGCATGGAAGCTGCTGAAAGAATGTTCTA  549
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCTTAACAGAAGTTTGATTGTGCATGGAAGCTGCTGAAAGAATGTTCTA  550

seq1  GAACCAGGTCTAGGTCCAGGGAAAAGGCTGAC-TTTCCAAAGACAGCAAT  598
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAACCAGGTCTAGGTCCAGGGAAAAGGCTGACTTTTCCAAAGACAGCAAT  600

seq1  TAGGAGGGCTTTCAGGAAGAAGTGGAAG-TTGAGGCTAGAG-TGGAGACC  646
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  TAGGAGGGCTTTCAGGAAGAAGTGGAAGTTTGAGGCTAGAGTTGGAGACC  650

seq1  CCATATCCATCATAGCCAGGAACACTCACCAGCCAAAGAAGGAAGCCCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCATCATAGCCAGGAACACTCACCAGCCAAAGAAGGAAGCCCAG  700

seq1  ACAGGGAAGCTCAGAAGGGCACCCCAAGACCTATGTTATCTGTGGGACTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAGCTCAGAAGGGCACCCCAAGACCTATGTTATCTGTGGGACTA  750

seq1  AGTCTGAGGCACCAAGATCAGAGTTGGGGATCTGTTACACCA  788
         ||||||||||||||||||||||||||||||| |||||||
seq2  GTCCTGAGGCACCAAGATCAGAGTTGGGGATCTGGTACACCA  792

seq1: chr5_140430816_140431695
seq2: B6Ng01-233J24.g_69_943 (reverse)

seq1  GGGGGCTTAACTCGAGTTCCAAGGACTGAATTCAGATTCTTTGCTTGTGT  50
      |||||||||||||||||||||| ||||||| ||||||   ||||||||||
seq2  GGGGGCTTAACTCGAGTTCCAA-GACTGAAATCAGAT--CTTGCTTGTGT  47

seq1  GGCTGGCGCTTTACCCACTAAGCCATCTCCCCAGGCCCCTGCACTGCGGA  100
      ||| ||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  GGC-GGCGCTTTA-CCATTAAGCCATCTCCCCAGGCCCCTGCACTGCGGA  95

seq1  CCTTCCCCCACAGCCACTGGGGCCCCACTGAGCCCCTCCCCCTTCCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCACAGCCACTGGGGCCCCACTGAGCCCCTCCCCCTTCCTTCC  145

seq1  TTTTGTGATTTGTATTCCCACACACTTTTACATTTATATGTACCCCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGATTTGTATTCCCACACACTTTTACATTTATATGTACCCCAGCC  195

seq1  CAGCAAAGGATACCGCTGCTGCAAATTCTGAAACTCTGACATGCGGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGGATACCGCTGCTGCAAATTCTGAAACTCTGACATGCGGGACA  245

seq1  GTAACTAAACAGGTGTGCTCAGTGGTGTCCTTCTGGCTGCGATGTGCGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAAACAGGTGTGCTCAGTGGTGTCCTTCTGGCTGCGATGTGCGCT  295

seq1  CCATTTCATCGCCATATAGTAGTCCACAGTGGATACGCCCTGTACTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCATCGCCATATAGTAGTCCACAGTGGATACGCCCTGTACTACTT  345

seq1  CCTCCCGATTCTCCGAAGACTCCTGGGGTCCCTCTCTGTGCATTCTGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGATTCTCCGAAGACTCCTGGGGTCCCTCTCTGTGCATTCTGAAC  395

seq1  AAACCAGTGTGTGCACCCTCCCACACCTCTTCCAGCATCGGCAGGGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTGTGTGCACCCTCCCACACCTCTTCCAGCATCGGCAGGGATTA  445

seq1  GACTTGGCCTGGGCTCTCTGCTCACAGACGCGGGTGTCTTTTCCTGTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGCCTGGGCTCTCTGCTCACAGACGCGGGTGTCTTTTCCTGTAGT  495

seq1  TTTTCCACCCAGGTGTGCGGGTGCCCCATTCATCAAGCAGGCTTGGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACCCAGGTGTGCGGGTGCCCCATTCATCAAGCAGGCTTGGAGAA  545

seq1  GTCAGTACTCACCTTCGGCCTGGGGCTGTGGCCCTGAACATGCTCTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTACTCACCTTCGGCCTGGGGCTGTGGCCCTGAACATGCTCTGTGG  595

seq1  ATTCCAGGTCCTAGGCAGCCCCCTAATTTTTCCCATTAACCATGAGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGTCCTAGGCAGCCCCCTAATTTTTCCCATTAACCATGAGCCTC  645

seq1  TCTGCTTTATCCCTAAGGGGTTGCCCATTCACCCTTGATCTCACTCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTATCCCTAAGGGGTTGCCCATTCACCCTTGATCTCACTCTGTC  695

seq1  AACCTGCAGGCCATGTGACCTTAGGTTATTCATAGGCTCTGCTCCTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCAGGCCATGTGACCTTAGGTTATTCATAGGCTCTGCTCCTGAAC  745

seq1  TCTGACCTCACTGTTGTGGGAACCCAGGCAGGAGAATTAGCCTTTATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTCACTGTTGTGGGAACCCAGGCAGGAGAATTAGCCTTTATGCT  795

seq1  TACCATCTGTAAAATGGGAACAGTCCCTTTAGACTTACGGAATGACTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTGTAAAATGGGAACAGTCCCTTTAGACTTACGGAATGACTGTA  845

seq1  TGCTGTTGACCTCTGAACAGAGGTGAATTC  880
      ||||||||||||||||||||||||||||||
seq2  TGCTGTTGACCTCTGAACAGAGGTGAATTC  875