BAC Information

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BAC

Clone NameB6Ng01-233M19
Chromosome5 (Build37)
Map Location 15,132,252 - 15,333,348
singlet/doubletdoublet
Overlap gene4930572O03Rik, Speer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233M19.bB6Ng01-233M19.g
ACCGA045754GA045755
length1,024930
definitionB6Ng01-233M19.b B6Ng01-233M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,132,252 - 15,133,275)(15,332,419 - 15,333,348)
sequence
gaattctactagatattcaaaaaagagttattgaaatactcctcaaatta
ttcataaagtagtaacagaagaaaaatagctaaactcattctatgagttc
atagtcaccctgatacagaaaccacacaaagactcaacaaagaaagagga
attcggtccaatttctcttttttaaccacttcatactaatttacttatct
tcataataaggaagaatatgtcttccttgtgtatttaaaattatgagatt
agatactcatattggacagaaggtaattgggttcataagaagtgatacat
aatagaaaagaacatgttcatggatttggagtcaggactatgctgtgtat
tggttattgaaaattaatatcagagtgacacagttgtgtgtctttaggaa
gatgactggtgggagacactgatcctaaaatgccttctgtattttagtcc
atacagaaaaacataggaaaaaaagaatatattggagtacatccaggaaa
cagttctggaagccattaaatattcccagaggaaaagtttcaaccagttg
ctaaaagtgtttttaccaggtgggatgaaagatatcctttcaaatacaat
tggtgtgaaatgggtgagcgaaagctttacctattcaccctctttccact
ttctctctactttggggttactcaaagaatcccaaaacctttccaccaaa
atctgggtttctacagggcagagattggaaaacgagttatgaaaacatac
acagagttcacttaaagggcctcacttgagtggaggaaagcaggaaaggt
ttagggagcagaagaagttatttttcaggcctgtggatataaaacaccag
gtgtcttgggagaagaacaagaaatactttggtggtatcccagctggaaa
gagaatggtgtgtgcaaatcaggataatagcaagagtagtgacataagaa
agatattctacagaaagtgtaatggagggaaactactactgtcctggagt
cggagcagcagagctgaccctttt
gaattccctcaaggtccagatgtggtctaaggaggattacaattgggact
ggttaagttgagcagaacgagtggatataccatacatctgtaaggacaca
gactcagaaggtagttctcctggatcccttggtagttttcatgcaaaggt
tgttagaaaagcttagcagaccatgtgccatacatgcctagcacaaatct
tacaaactcattgtcacccagcatatgccaggaactcttcccaggactat
gctaatgaaggtgccatataaccttgaaccatcagaattttgagtttagt
aagtaacatctttatcaagccgaatgactcagccattttctagcaatgga
aagttaataataatcccgactctctacaagaaaaatccaattttcagaat
taaattttgaattagttaattggttcttatttatcataacctgatattat
agttgtagtcttttgtatagtccttataccacaaattcttccttgggcaa
tgtcagaagcttggctgataaacttagggttttgtgataagtttgcttac
ttactgattcttacaggtagtcaggaaaaaaatattctgacttagaatct
gaagcaaaaatgtaaaggtaaatatagatatgaacttaggagtccattta
aatgtttaattagcatttataacctcaatgtgtatggtggcaagaaacaa
ctctttacttaatgaaactgaagaaaaagatctgccagatcagaaataat
acatctgccaggcagtggtggcccacgcctttaatcccagcacttgggtg
gcagaggtaggtggatttatgagttcaagaccagcctggtctacagagtg
agttccaggacagcccaggactatacagagaaatcctgtgttgaaaaaaa
agagagagagagagaggggggggggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15132252_15133275
seq2: B6Ng01-233M19.b_44_1067

seq1  GAATTCTACTAGATATTCAAAAAAGAGTTATTGAAATACTCCTCAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTAGATATTCAAAAAAGAGTTATTGAAATACTCCTCAAATTA  50

seq1  TTCATAAAGTAGTAACAGAAGAAAAATAGCTAAACTCATTCTATGAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAGTAGTAACAGAAGAAAAATAGCTAAACTCATTCTATGAGTTC  100

seq1  ATAGTCACCCTGATACAGAAACCACACAAAGACTCAACAAAGAAAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCACCCTGATACAGAAACCACACAAAGACTCAACAAAGAAAGAGGA  150

seq1  ATTCGGTCCAATTTCTCTTTTTTAACCACTTCATACTAATTTACTTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGTCCAATTTCTCTTTTTTAACCACTTCATACTAATTTACTTATCT  200

seq1  TCATAATAAGGAAGAATATGTCTTCCTTGTGTATTTAAAATTATGAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATAAGGAAGAATATGTCTTCCTTGTGTATTTAAAATTATGAGATT  250

seq1  AGATACTCATATTGGACAGAAGGTAATTGGGTTCATAAGAAGTGATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTCATATTGGACAGAAGGTAATTGGGTTCATAAGAAGTGATACAT  300

seq1  AATAGAAAAGAACATGTTCATGGATTTGGAGTCAGGACTATGCTGTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAGAACATGTTCATGGATTTGGAGTCAGGACTATGCTGTGTAT  350

seq1  TGGTTATTGAAAATTAATATCAGAGTGACACAGTTGTGTGTCTTTAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATTGAAAATTAATATCAGAGTGACACAGTTGTGTGTCTTTAGGAA  400

seq1  GATGACTGGTGGGAGACACTGATCCTAAAATGCCTTCTGTATTTTAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTGGTGGGAGACACTGATCCTAAAATGCCTTCTGTATTTTAGTCC  450

seq1  ATACAGAAAAACATAGGAAAAAAAGAATATATTGGAGTACATCCAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAAAACATAGGAAAAAAAGAATATATTGGAGTACATCCAGGAAA  500

seq1  CAGTTCTGGAAGCCATTAAATATTCCCAGAGGAAAAGTTTCAACCAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGGAAGCCATTAAATATTCCCAGAGGAAAAGTTTCAACCAGTTG  550

seq1  CTAAAAGTGTTTTTACCAGGTGGGATGAAAGATATCCTTTCAAATACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGTGTTTTTACCAGGTGGGATGAAAGATATCCTTTCAAATACAAT  600

seq1  TGGTGTGAAATGGGTGAGCGAAAGCTTTACCTATTCACCCTCTTTCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGAAATGGGTGAGCGAAAGCTTTACCTATTCACCCTCTTTCCACT  650

seq1  TTCTCTCTACTTTGGGGTTACTCAAAGAATCCCAAAACCTTTCCACCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTACTTTGGGGTTACTCAAAGAATCCCAAAACCTTTCCACCAAA  700

seq1  ATCTGGGTTTCTACAGGGCAGAGATTGGAAAACGAGTTATGAAAACATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTTTCTACAGGGCAGAGATTGGAAAACGAGTTATGAAAACATAC  750

seq1  ACAGAGTTCACTT-AAGGGCCTCACTTGAGTGGAGGAAAGCAGGAAAGGT  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTCACTTAAAGGGCCTCACTTGAGTGGAGGAAAGCAGGAAAGGT  800

seq1  TTAGGGGAGCAG-AGAAGTTATTTTTCAGGGCCTGTGGATATAAAACACC  848
      ||| |||||||| ||||||||||||||| |||||||||||||||||||||
seq2  TTA-GGGAGCAGAAGAAGTTATTTTTCA-GGCCTGTGGATATAAAACACC  848

seq1  AGGTGTCTTGGGAG-AGAACA--GAATACTTTGGTGGTATCCCAGCTGGA  895
      |||||||||||||| ||||||   ||||||||||||||||||||||||||
seq2  AGGTGTCTTGGGAGAAGAACAAGAAATACTTTGGTGGTATCCCAGCTGGA  898

seq1  AAGAG-ATGGTGTGTGCAAATCAGGATAATAGCAAGAAGGTTAGTGACAT  944
      ||||| |||||||||||||||||||||||||||||||    |||||||||
seq2  AAGAGAATGGTGTGTGCAAATCAGGATAATAGCAAGA---GTAGTGACAT  945

seq1  -AGAAAGATATTCTACAGAAAGTGTTAATTGAGGGAAACTACTACTGTCC  993
       ||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  AAGAAAGATATTCTACAGAAAGTG-TAATGGAGGGAAACTACTACTGTCC  994

seq1  TGGAGTTCGCAGCAGCAGAGCTGTCCCTTTT  1024
      ||||| ||| ||||||||||||| |||||||
seq2  TGGAG-TCGGAGCAGCAGAGCTGACCCTTTT  1024

seq1: chr5_15332419_15333348
seq2: B6Ng01-233M19.g_65_994 (reverse)

seq1  TCTCTCCCCCCCCCCTCTCTCTCTCTCTTCTTTTTTTTCAACACAGGATT  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTCTCCCCCCCCCCTCTCTCTCTCTC-TCTTTTTTTTCAACACAGGATT  49

seq1  TCTCTGTATAGTCCT-GGCTGTCCTGGAACTCACTCTGTAGACCAGGCTG  99
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATAGTCCTGGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTG  99

seq1  GTCTTGAACTCATAAATCCACCTACCTCTGCCACCCAAGTGCTGGGATTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAACTCATAAATCCACCTACCTCTGCCACCCAAGTGCTGGGATTA  149

seq1  AAGGCGTGGGCCACCACTGCCTGGCAGATGTATTATTTCTGATCTGGCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTGGGCCACCACTGCCTGGCAGATGTATTATTTCTGATCTGGCAG  199

seq1  ATCTTTTTCTTCAGTTTCATTAAGTAAAGAGTTGTTTCTTGCCACCATAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCTTCAGTTTCATTAAGTAAAGAGTTGTTTCTTGCCACCATAC  249

seq1  ACATTGAGGTTATAAATGCTAATTAAACATTTAAATGGACTCCTAAGTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGGTTATAAATGCTAATTAAACATTTAAATGGACTCCTAAGTTC  299

seq1  ATATCTATATTTACCTTTACATTTTTGCTTCAGATTCTAAGTCAGAATAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATATTTACCTTTACATTTTTGCTTCAGATTCTAAGTCAGAATAT  349

seq1  TTTTTTCCTGACTACCTGTAAGAATCAGTAAGTAAGCAAACTTATCACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTGACTACCTGTAAGAATCAGTAAGTAAGCAAACTTATCACAA  399

seq1  AACCCTAAGTTTATCAGCCAAGCTTCTGACATTGCCCAAGGAAGAATTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAAGTTTATCAGCCAAGCTTCTGACATTGCCCAAGGAAGAATTTG  449

seq1  TGGTATAAGGACTATACAAAAGACTACAACTATAATATCAGGTTATGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAAGGACTATACAAAAGACTACAACTATAATATCAGGTTATGATA  499

seq1  AATAAGAACCAATTAACTAATTCAAAATTTAATTCTGAAAATTGGATTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAACCAATTAACTAATTCAAAATTTAATTCTGAAAATTGGATTTT  549

seq1  TCTTGTAGAGAGTCGGGATTATTATTAACTTTCCATTGCTAGAAAATGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAGAGAGTCGGGATTATTATTAACTTTCCATTGCTAGAAAATGGC  599

seq1  TGAGTCATTCGGCTTGATAAAGATGTTACTTACTAAACTCAAAATTCTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATTCGGCTTGATAAAGATGTTACTTACTAAACTCAAAATTCTGA  649

seq1  TGGTTCAAGGTTATATGGCACCTTCATTAGCATAGTCCTGGGAAGAGTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAAGGTTATATGGCACCTTCATTAGCATAGTCCTGGGAAGAGTTC  699

seq1  CTGGCATATGCTGGGTGACAATGAGTTTGTAAGATTTGTGCTAGGCATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATATGCTGGGTGACAATGAGTTTGTAAGATTTGTGCTAGGCATGT  749

seq1  ATGGCACATGGTCTGCTAAGCTTTTCTAACAACCTTTGCATGAAAACTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACATGGTCTGCTAAGCTTTTCTAACAACCTTTGCATGAAAACTAC  799

seq1  CAAGGGATCCAGGAGAACTACCTTCTGAGTCTGTGTCCTTACAGATGTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGATCCAGGAGAACTACCTTCTGAGTCTGTGTCCTTACAGATGTAT  849

seq1  GGTATATCCACTCGTTCTGCTCAACTTAACCAGTCCCAATTGTAATCCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATCCACTCGTTCTGCTCAACTTAACCAGTCCCAATTGTAATCCTC  899

seq1  CTTAGACCACATCTGGACCTTGAGGGAATTC  930
      |||||||||||||||||||||||||||||||
seq2  CTTAGACCACATCTGGACCTTGAGGGAATTC  930