BAC Information

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BAC

Clone NameB6Ng01-233M23
Chromosome5 (Build37)
Map Location 125,832,571 - 126,016,291
singlet/doubletdoublet
Overlap geneUbc, Dhx37, Bri3bp, Aacs, Tmem132b
Upstream geneSbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1
Downstream geneEG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233M23.bB6Ng01-233M23.g
ACCGA045762GA045763
length1,080376
definitionB6Ng01-233M23.b B6Ng01-233M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,832,571 - 125,833,647)(126,015,908 - 126,016,291)
sequence
gaattctggggcagcccacccccaccaataaaaacatagtttgcaagcct
agcatggtggcccatgccagtaatccaagagcttgggcagtggaggcaga
aggccataatcccagtttaaggccagccaggggctacatgagactctgtc
tttaaaacaggccttcgtacacctcccttgttggatgctggctgcctagg
tgaggtacttactgaaaagacagtagccttcttctgatccagagcttttg
gcacgtggatcttcgtcaaaagcctgaaactggtatggctggagctgctg
cctctcctcgggactcagtcttcctcgttaacatcctgtactctctaggt
ctctgctccggggcatcccactggatgtaggtggaggcagctgcttgttc
ggcttcttcatccgttcgaccgttcacagagcaccttccttgctcaggac
agtgctgggctctggacacccatggggagaatttgcttttccagagaatt
ttaggcgagtgtggtaacaagaactagcggcacaggcacagttggtagct
ttcccaaatgctttcctattgtctccttttcatcctggcagggcctggtg
agtactaggtaggctctgtatcccagagagtggaaacagacaaagatagt
caccaataggcaaagtatgtcaatgccaaaaaaagtacgtaagcctcgga
ccttgaacacattaaccactaaccacaggtctaccacagagtcacactct
gtttctacaaagtaatttctaaagggtagagaggtggctcagtggttaag
agcactggctggccactcttccggaggatgtgagttcaactcccagcata
tgagggctagcaactgtccagctccgggggattgactgccctcttctggc
ctctacaggcactgcactcatgtgcacatacccaccacacccagtgcata
catacaatgagaaaaattatattgtcagatgctgttttcctgatacctca
caggaactgtttccaagctcagtcaggttgttagccatacaaggatctca
tccatcacggcaggtgaattggctccagaa
aagcccagcctggtctatagaggttccaggacagccagagctacatagtg
agatcctgtatcaacgcgcgcgtgcgcgcgcgcgcacacacacacacaca
cacacacacacacacacacacacgagagagagagagagagagagagagag
agagagagagagagagagagagagagtccaagacgatgggttgagaagac
agagctttagccagtggataggagccccagtttgacagaaattcacaccc
tctggctggcctcaacctcggacctgcagcaggactgcgctcagaggcgc
ccatctgctctggaccactttctccaaagagctgcgggtggtacctaagc
ccctcctccttctcctcctcctccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_125832571_125833647
seq2: B6Ng01-233M23.b_47_1126

seq1  GAATTCTGGGGCAGCCCACCCCCACCAATAAAAACATAGTTTGCAAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGCAGCCCACCCCCACCAATAAAAACATAGTTTGCAAGCCT  50

seq1  AGCATGGTGGCCCATGCCAGTAATCCAAGAGCTTGGGCAGTGGAGGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTGGCCCATGCCAGTAATCCAAGAGCTTGGGCAGTGGAGGCAGA  100

seq1  AGGCCATAATCCCAGTTTAAGGCCAGCCAGGGGCTACATGAGACTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATAATCCCAGTTTAAGGCCAGCCAGGGGCTACATGAGACTCTGTC  150

seq1  TTTAAAACAGGCCTTCGTACACCTCCCTTGTTGGATGCTGGCTGCCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACAGGCCTTCGTACACCTCCCTTGTTGGATGCTGGCTGCCTAGG  200

seq1  TGAGGTACTTACTGAAAAGACAGTAGCCTTCTTCTGATCCAGAGCTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTACTTACTGAAAAGACAGTAGCCTTCTTCTGATCCAGAGCTTTTG  250

seq1  GCACGTGGATCTTCGTCAAAAGCCTGAAACTGGTATGGCTGGAGCTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTGGATCTTCGTCAAAAGCCTGAAACTGGTATGGCTGGAGCTGCTG  300

seq1  CCTCTCCTCGGGACTCAGTCTTCCTCGTTAACATCCTGTACTCTCTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTCGGGACTCAGTCTTCCTCGTTAACATCCTGTACTCTCTAGGT  350

seq1  CTCTGCTCCGGGGCATCCCACTGGATGTAGGTGGAGGCAGCTGCTTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCCGGGGCATCCCACTGGATGTAGGTGGAGGCAGCTGCTTGTTC  400

seq1  GGCTTCTTCATCCGTTCGACCGTTCACAGAGCACCTTCCTTGCTCAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTCATCCGTTCGACCGTTCACAGAGCACCTTCCTTGCTCAGGAC  450

seq1  AGTGCTGGGCTCTGGACACCCATGGGGAGAATTTGCTTTTCCAGAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGCTCTGGACACCCATGGGGAGAATTTGCTTTTCCAGAGAATT  500

seq1  TTAGGCGAGTGTGGTAACAAGAACTAGCGGCACAGGCACAGTTGGTAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCGAGTGTGGTAACAAGAACTAGCGGCACAGGCACAGTTGGTAGCT  550

seq1  TTCCCAAATGCTTTCCTATTGTCTCCTTTTCATCCTGGCAGGGCCTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAATGCTTTCCTATTGTCTCCTTTTCATCCTGGCAGGGCCTGGTG  600

seq1  AGTACTAGGTAGGCTCTGTATCCCAGAGAGTGGAAACAGACAAAGATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTAGGTAGGCTCTGTATCCCAGAGAGTGGAAACAGACAAAGATAGT  650

seq1  CACCAATAGGCAAAGTATGTCAATGCCAAAAAAAGTACGTAAGCCTCGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATAGGCAAAGTATGTCAATGCCAAAAAAAGTACGTAAGCCTCGGA  700

seq1  CCTTGAACACATTAACCACTAACCACAGGTCTACCACAGAGTCACACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACACATTAACCACTAACCACAGGTCTACCACAGAGTCACACTCT  750

seq1  GTTTCTACAAAGTAATTTCTAAAGGGTAGAGAGGTGGCTCAGTGGTTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACAAAGTAATTTCTAAAGGGTAGAGAGGTGGCTCAGTGGTTAAG  800

seq1  AGCACTGGCTGGCCACTCTTCCGGAGGATGTGAGTTCAACTCCCAGCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGCTGGCCACTCTTCCGGAGGATGTGAGTTCAACTCCCAGCATA  850

seq1  TGAGGGCTAGCAACTGTCCAGCTCCGGGGGATTGACTGCCCTCTTCTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCTAGCAACTGTCCAGCTCCGGGGGATTGACTGCCCTCTTCTGGC  900

seq1  CTCTACAGGCACTGCACTCATGTGCACATACCCACCACACCCAAGTGCAT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCTACAGGCACTGCACTCATGTGCACATACCCACCACACCC-AGTGCAT  949

seq1  ACATACAATGAGAAAAATTATATTGTCAGATGCTGTTTTCCTGATA-CTC  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATACAATGAGAAAAATTATATTGTCAGATGCTGTTTTCCTGATACCTC  999

seq1  ACAGGAACTGTTTCCCAAGCTCAGTCAGG-TGTTAG-CATACAAAGATCT  1047
      ||||||||||||| ||||||||||||||| |||||| ||||||| |||||
seq2  ACAGGAACTGTTT-CCAAGCTCAGTCAGGTTGTTAGCCATACAAGGATCT  1048

seq1  CATCCAACACGGCAGGTG-ATTGGC-CCAGAA  1077
      |||||| ||||||||||| |||||| ||||||
seq2  CATCCATCACGGCAGGTGAATTGGCTCCAGAA  1080

seq1: chr5_126015908_126016291
seq2: B6Ng01-233M23.g_70_451 (reverse)

seq1  GAGGAGGAGGAGGAGAAGGAGGAGGGGCTTAGGTACCACCCGCAGCTCTT  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGAGGAGGAGAAGGAGGAGGGGCTTAGGTACCACCCGCAGCTCTT  50

seq1  TGGAGAAAGTGGTCCAGAGCAGATGGGCGCCTCTGAGCGCAGTCCTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGTGGTCCAGAGCAGATGGGCGCCTCTGAGCGCAGTCCTGCTG  100

seq1  CAGGTCCGAGGTTGAGGCCAGCCAGAGGGTGTGAATTTCTGTCAAACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCGAGGTTGAGGCCAGCCAGAGGGTGTGAATTTCTGTCAAACTGG  150

seq1  GGCTCCTATCCACTGGCTAAAGCTCTGTCTTCTCAACCCATCGTCTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTATCCACTGGCTAAAGCTCTGTCTTCTCAACCCATCGTCTTGGA  200

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  250

seq1  CTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCG  300
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTC--GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCG  298

seq1  CGCGCACGCGCGCGTTGATACAGGATCTCACTATGTAGCTCTGGCTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCACGCGCGCGTTGATACAGGATCTCACTATGTAGCTCTGGCTGTCC  348

seq1  TGGAACCTCTATAGACCAGGCTGGGCTTGAATTC  384
      ||||||||||||||||||||||||||||||||||
seq2  TGGAACCTCTATAGACCAGGCTGGGCTTGAATTC  382