BAC Information

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BAC

Clone NameB6Ng01-234A02
Chromosome5 (Build37)
Map Location 78,290,366 - 78,301,399
singlet/doubletdoublet
Overlap genenone
Upstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234A02.bB6Ng01-234A02.g
ACCGA045896GA045897
length1,0991,177
definitionB6Ng01-234A02.b B6Ng01-234A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,300,298 - 78,301,399)(78,290,366 - 78,291,536)
sequence
gaattcataaaattagatcagaaaaaaacttagaataattataggtgtat
atgtgatttaacaaaatttcagggtgtattggcctgagagagaaatttgt
gtaaattaacattatatccacagcagatgctacggtgcttcaaacattgt
aagtaccaaatctatttgaatgcattgtaaataatgtgattccataaaca
aattgtggagttaaataaaccacgtaagatgtatactatatcttgacttc
tatatttgtgcacattctttgatttctaccatctcatacttcagatgaga
tacatagaccaaaacttgtccttcctgatttttaaaaagaaagcagccaa
cccactgccaagtagagtcaaagataaaagcttacagttcctggttcctg
gtttcttaccatgaagtcacaaaaataataaattttaatatccatttctc
atatatagatactactatatgtgtgttctgccaccatttgaaaggaaagt
taaatgcagaaaaaaaatgtgaagtacttataatataaaaactagaggtc
agccaaatgaatcttatgcctattgattacctttttaattctactctttc
ctactcctctagcttttctgttggttgcagtgcagatcatcaccagtaga
tagcacaactcaagtgagaaaagaagatgcaagagcagaaggggaagagg
ccggaaaatgttcattcattaactagaccgcagcaagctacttccgtgaa
agcactaaaccatgcttgcgtttagtgttttcttgatgggaaaagtgaag
agtcagcctgtctcctcctgaacttgctgttgccatcctgttagatagcc
aggacaggaaagttaattattcgaccattcttgtcaccatctccctagag
aaaacacaaaaagtgctgaattgctgaccctgtaagcattcctgggagaa
aagcactgtgtttttttttttttttaacccatctgaatgccattcagaat
aggaaattgggtttagaagaaagctcagaagataacagaattgattatgg
tatgattgagagactaaagagccaacgaacctttctgttataaatccaa
gaattctttttagtctgttcatttttgtttgtttgctattttcatgttgt
tatttaagagataaagctcttatcctatcaaaaccaaccaaacaaataac
aaaaaaccttccagatatgatattgcttagtcccttaaacccagggcatg
accacatgaccttttctcgaccagagagatgtggataattataacccccc
ccccccccccgccacttattcagagtgggagtttggcaagaatttgagct
tccttttttagttactttggtaacccattactgattcatgccactaataa
ataggaacagagttctctttaaccaagaggcagtataattgtggtccagt
ctgctgatcttcctgaagctctgctccctgtccacagactaagtgataat
gggaggacattcttctagctaccatcctaagaagtaaatgaggcaataca
cacaacgctcacgatgtgaaacagtgtgtacacaaggaccaagtgactgg
gaccttagtcatgtagaggaacagagtggacactggctgctcctgggaga
gaaactcccagacatggtgaccatgatggcaaactcggactctggtgttc
caccagctccaacttctgagcccattcttctacaccgggctgtctctggg
ctctgaggagacaccacccctcctacatatagaactcctatgtgatgcct
ctgccctccctctgattctgtgagtgactcagcagtctttttagtcaatt
gcttgtctgctgactgccaagtcatgtttctgctgtttggaactagagac
acttgttcttttgttaggtctagcatatttcctggtactcaggacggaca
gacagacaaacaaacaacaaacaaacaaacaaaggcacggcttttcaaag
tcaggcaggactggtttgattcccacggtgtcagttttcagcatgagggc
acattttcttagacttccaacttttctgcctttcttatccttaagtagaa
gacaattctctttactcactcagaataagctgaggaagcagacatcaaag
tagccatgcccttagtcttcacctcgatgactatgtgggggccagttaat
ttcttccctcacagcagtcggtgtcttgttccatttaaattatgagttgg
gcctgtatggaaatattattaaaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78300298_78301399
seq2: B6Ng01-234A02.b_47_1145 (reverse)

seq1  TTGGAATTTAT-ACAGAAAGGGTTTCCTTTGCTTCTTTAGTCTCTTCAAT  49
      |||| |||||| |||||||||  ||| || || ||||||||||| |||||
seq2  TTGG-ATTTATAACAGAAAGG--TTCGTTGGC-TCTTTAGTCTC-TCAAT  45

seq1  CAATACCATAATCAATTCTGTTATCTTCTGAGCTTTC-TCT-AACCCAAT  97
      | ||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  C-ATACCATAATCAATTCTGTTATCTTCTGAGCTTTCTTCTAAACCCAAT  94

seq1  T--CTA-TCTGAATGGCATTCAGATGGTTAAAAAAAAAAAAAAAAAAACA  144
      |  ||| |||||||||||||||||||| |    |||||||||||||||||
seq2  TTCCTATTCTGAATGGCATTCAGATGGGT---TAAAAAAAAAAAAAAACA  141

seq1  CAGTGCTTTTCTCCCAGGAATGCTTACAGGGTCAGCAATTCAGCACTTTT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTTCTCCCAGGAATGCTTACAGGGTCAGCAATTCAGCACTTTT  191

seq1  TGTGTTTTCTCTAGGGAGATGGTGACAAGAATGGTCGAATAATTAACTTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCTCTAGGGAGATGGTGACAAGAATGGTCGAATAATTAACTTT  241

seq1  CCTGTCCTGGCTATCTAACAGGATGGCAACAGCAAGTTCAGGAGGAGACA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTGGCTATCTAACAGGATGGCAACAGCAAGTTCAGGAGGAGACA  291

seq1  GGCTGACTCTTCACTTTTCCCATCAAGAAAACACTAAACGCAAGCATGGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTCTTCACTTTTCCCATCAAGAAAACACTAAACGCAAGCATGGT  341

seq1  TTAGTGCTTTCACGGAAGTAGCTTGCTGCGGTCTAGTTAATGAATGAACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCTTTCACGGAAGTAGCTTGCTGCGGTCTAGTTAATGAATGAACA  391

seq1  TTTTCCGGCCTCTTCCCCTTCTGCTCTTGCATCTTCTTTTCTCACTTGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGGCCTCTTCCCCTTCTGCTCTTGCATCTTCTTTTCTCACTTGAG  441

seq1  TTGTGCTATCTACTGGTGATGATCTGCACTGCAACCAACAGAAAAGCTAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTATCTACTGGTGATGATCTGCACTGCAACCAACAGAAAAGCTAG  491

seq1  AGGAGTAGGAAAGAGTAGAATTAAAAAGGTAATCAATAGGCATAAGATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGGAAAGAGTAGAATTAAAAAGGTAATCAATAGGCATAAGATTC  541

seq1  ATTTGGCTGACCTCTAGTTTTTATATTATAAGTACTTCACATTTTTTTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTGACCTCTAGTTTTTATATTATAAGTACTTCACATTTTTTTTC  591

seq1  TGCATTTAACTTTCCTTTCAAATGGTGGCAGAACACACATATAGTAGTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTAACTTTCCTTTCAAATGGTGGCAGAACACACATATAGTAGTAT  641

seq1  CTATATATGAGAAATGGATATTAAAATTTATTATTTTTGTGACTTCATGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATGAGAAATGGATATTAAAATTTATTATTTTTGTGACTTCATGG  691

seq1  TAAGAAACCAGGAACCAGGAACTGTAAGCTTTTATCTTTGACTCTACTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACCAGGAACCAGGAACTGTAAGCTTTTATCTTTGACTCTACTTG  741

seq1  GCAGTGGGTTGGCTGCTTTCTTTTTAAAAATCAGGAAGGACAAGTTTTGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGTTGGCTGCTTTCTTTTTAAAAATCAGGAAGGACAAGTTTTGG  791

seq1  TCTATGTATCTCATCTGAAGTATGAGATGGTAGAAATCAAAGAATGTGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTATCTCATCTGAAGTATGAGATGGTAGAAATCAAAGAATGTGCA  841

seq1  CAAATATAGAAGTCAAGATATAGTATACATCTTACGTGGTTTATTTAACT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATAGAAGTCAAGATATAGTATACATCTTACGTGGTTTATTTAACT  891

seq1  CCACAATTTGTTTATGGAATCACATTATTTACAATGCATTCAAATAGATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTTGTTTATGGAATCACATTATTTACAATGCATTCAAATAGATT  941

seq1  TGGTACTTACAATGTTTGAAGCACCGTAGCATCTGCTGTGGATATAATGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTTACAATGTTTGAAGCACCGTAGCATCTGCTGTGGATATAATGT  991

seq1  TAATTTACACAAATTTCTCTCTCAGGCCAATACACCCTGAAATTTTGTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACACAAATTTCTCTCTCAGGCCAATACACCCTGAAATTTTGTTA  1041

seq1  AATCACATATACACCTATAATTATTCTAAGTTTTTTTCTGATCTAATTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATATACACCTATAATTATTCTAAGTTTTTTTCTGATCTAATTTT  1091

seq1  ATGAATTC  1102
      ||||||||
seq2  ATGAATTC  1099

seq1: chr5_78290366_78291536
seq2: B6Ng01-234A02.g_64_1240

seq1  GAATTCTTTTTAGTCTGTTCATTTTTGTTTGTTTGCTATTTTCATGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAGTCTGTTCATTTTTGTTTGTTTGCTATTTTCATGTTGT  50

seq1  TATTTAAGAGATAAAGCTCTTATCCTATCAAAACCAACCAAACAAATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGAGATAAAGCTCTTATCCTATCAAAACCAACCAAACAAATAAC  100

seq1  AAAAAACCTTCCAGATATGATATTGCTTAGTCCCTTAAACCCAGGGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCTTCCAGATATGATATTGCTTAGTCCCTTAAACCCAGGGCATG  150

seq1  ACCACATGACCTTTTCTCGACCAGAGAGATGTGGATAATTATAACCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGACCTTTTCTCGACCAGAGAGATGTGGATAATTATAACCCCCC  200

seq1  CCCCCCCCCCGCCACTTATTCAGAGTGGGAGTTTGGCAAGAATTTGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCGCCACTTATTCAGAGTGGGAGTTTGGCAAGAATTTGAGCT  250

seq1  TCCTTTTTTAGTTACTTTGGTAACCCATTACTGATTCATGCCACTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTAGTTACTTTGGTAACCCATTACTGATTCATGCCACTAATAA  300

seq1  ATAGGAACAGAGTTCTCTTTAACCAAGAGGCAGTATAATTGTGGTCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAACAGAGTTCTCTTTAACCAAGAGGCAGTATAATTGTGGTCCAGT  350

seq1  CTGCTGATCTTCCTGAAGCTCTGCTCCCTGTCCACAGACTAAGTGATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGATCTTCCTGAAGCTCTGCTCCCTGTCCACAGACTAAGTGATAAT  400

seq1  GGGAGGACATTCTTCTAGCTACCATCCTAAGAAGTAAATGAGGCAATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACATTCTTCTAGCTACCATCCTAAGAAGTAAATGAGGCAATACA  450

seq1  CACAACGCTCACGATGTGAAACAGTGTGTACACAAGGACCAAGTGACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACGCTCACGATGTGAAACAGTGTGTACACAAGGACCAAGTGACTGG  500

seq1  GACCTTAGTCATGTAGAGGAACAGAGTGGACACTGGCTGCTCCTGGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAGTCATGTAGAGGAACAGAGTGGACACTGGCTGCTCCTGGGAGA  550

seq1  GAAACTCCCAGACATGGTGACCATGATGGCAAACTCGGACTCTGGTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCCAGACATGGTGACCATGATGGCAAACTCGGACTCTGGTGTTC  600

seq1  CACCAGCTCCAACTTCTGAGCCCATTCTTCTACACCGGGCTGTCTCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTCCAACTTCTGAGCCCATTCTTCTACACCGGGCTGTCTCTGGG  650

seq1  CTCTGAGGAGACACCACCCCTCCTACATATAGAACTCCTATGTGATGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGAGACACCACCCCTCCTACATATAGAACTCCTATGTGATGCCT  700

seq1  CTGCCCTCCCTCTGATTCTGTGAGTGACTCAGCAGTCTTTTTAGTCAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCCCTCTGATTCTGTGAGTGACTCAGCAGTCTTTTTAGTCAATT  750

seq1  GCTTGTCTGCTGACTGCCAAGTCATGTTTCTGCTGTTTGGAACTAGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTGCTGACTGCCAAGTCATGTTTCTGCTGTTTGGAACTAGAGAC  800

seq1  ACTTGTTCTTTTGTTAGGTCTAGCATATTTCCTGGTACTCAAGACAGACA  850
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  ACTTGTTCTTTTGTTAGGTCTAGCATATTTCCTGGTACTCAGGACGGACA  850

seq1  GACAGACAAACAAACAAACAAACAAACAAAACAAAGGCACGGCTTTTCAA  900
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  GACAGACAAACAAAC-AACAAACAAAC-AAACAAAGGCACGGCTTTTCAA  898

seq1  AGTCAGGCAGGACTGGTTTGATTCCCACGGTGTCAGTTTTCAGCATGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCAGGACTGGTTTGATTCCCACGGTGTCAGTTTTCAGCATGAGG  948

seq1  GCACA-TTTCTTAGAC-TCCCACTTTCTTGCC-TTCTTATCCTTAAGTAG  997
      ||||| |||||||||| ||| |||||  |||| |||||||||||||||||
seq2  GCACATTTTCTTAGACTTCCAACTTTTCTGCCTTTCTTATCCTTAAGTAG  998

seq1  -AGACAATTCTCTTTACTCACTCAGAAT-AGCTGAGGAAGCAGACATCCA  1045
       ||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  AAGACAATTCTCTTTACTCACTCAGAATAAGCTGAGGAAGCAGACAT-CA  1047

seq1  AAGTAGCCATGCCC-TAGTC-TCACCTCGGATGACTATGT-GGGGCAGGT  1092
      |||||||||||||| ||||| ||||||| ||||||||||| |||||  ||
seq2  AAGTAGCCATGCCCTTAGTCTTCACCTC-GATGACTATGTGGGGGCCAGT  1096

seq1  TAATTTCTTCCCTCACAGCAGTCCGGGTGTCTTGGTTCCTTTTATATTAT  1142
      |||||||||||||||||||||||  |||||||| ||||| |||| |||||
seq2  TAATTTCTTCCCTCACAGCAGTC--GGTGTCTT-GTTCCATTTAAATTAT  1143

seq1  GAGTTGGG-CTGTATGG--ATATTAT--AAATAG  1171
      |||||||| ||||||||  |||||||  ||||||
seq2  GAGTTGGGCCTGTATGGAAATATTATTAAAATAG  1177