BAC Information

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BAC

Clone NameB6Ng01-234B13
Chromosome5 (Build37)
Map Location 57,782,304 - 57,783,286
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455
Downstream geneLOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234B13.bB6Ng01-234B13.g
ACCGA045954GA045955
length1,196982
definitionB6Ng01-234B13.b B6Ng01-234B13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaaagctggttctttgagaaaataaacaagatagacaagtgctt
agctaaactaacttaaaggcagagagatagcacccaaattaacaaaatca
gaaatggaaagcaagacataacaacggacaccaaggaaattcaaagaata
attaggtctgacttcaaaagcctgtactccacaacattggaaaatctaaa
taaaatggatgatattctagatagatgttatctaccaaaactaaatcaag
atcaggtaaaccatctgaatgatactacaacccctaaggaaatagaagta
cttgttatgagtctcccaaacaaaaagagctctagaccagaagctttttg
ttcagaattctaccagactttcaaagaagagctaatgacaatactcctta
aattgttccataaaatagaaacagaaggtacactgccaaactcattctat
gaggccacagtcaccgtgatacctaaagcacacaatgactcaacaaagaa
cgagaatttcaaaccaatttcccttatgaacattaatgcaaaaatgctca
ataaaaacttgtaaaataaatccaaaaatacattaaatacatcatccacc
ataataaaggaggcttctttccatgaatgcagggatggttcagtacaaga
aaatccatcaacataatctgccatataaacaaacaaagaaaaaaaaacat
gattctttaactaggtgttgagatagcattttacaaaatccaacatccct
tcatgataagtcttgaagagagcagagacaaaagagacatacctaaacac
aataaatttaataaacagcaagccaatggccaacaccaaattaaaaggat
agaaatttaaaacatttccactaaatttgtaaacaagacaagactgtcta
ctcttcatggatctcttcaatatattatttgaagttctgcctagagcaat
aagagaactgaaagagatcaaggggataacaaattgggaaaggaacaact
aaaagtattctctattcacagatgatatgatagtatacatagacatccaa
aatctactagagaaactctacagcagataaacatcctccagcaattgctt
ggatcaaatactcaaagtagtaagtagttcctccttacgtacggaccaat
gcacctgagaagcaattaaggaaaaataggtgaaccgctctcccca

gaattcacttggttaagtaagaaaagttgtgtcagataaagctaaagagt
ggtcaaacctatcttggagctcataaaacatcatactggacaatatgata
acaaagcctaggacttcagtaattttcctcagtaaaaatgatttattttt
cttttagttgcaatcacgagtgcataatttcaaatggagttatttttatt
gaacactttgcacaagaaagttgaagaccttgccgaactctgagaagcat
gtcagcacagtcatccatttactgtgaagaccatactgctttgctctgtt
ggattatattattgttaaagtttagtataaaaacattgctgtatgcctca
aggcaatatttagttggaatgtgattgttcaccagcattatttaatagct
taattcatttaaaaagtaaaaaaaaaaaaaaaaaaaagatagctataaaa
acctgaataataatacaatggttttacaaaattggccccatggaaaccct
caaagcatccaggcaattgccaaagccattgggtgccctcctcagactga
tggtaaggctctattgcagaagacaacgtttacaaaacttacatcagtaa
acatggagaagttaagctagtctgtacttacttgtgtctacttacaagtc
tctacttgctagtctttttttctccactcacttgtgttcatggtattgga
aagtacacaacatactactagaggaaaaagataaacaaaacccagataca
aaccatacaatgtacctttgtgacctgcctgcaagaaacatgggtgcaat
agttgagaggaaagttttgagagcaaccaatcacttactattttattgga
gctcaagcctgctccatgagacagaatccatgcccctcattgggtatcta
agaatataatagattgacaatggacctagggagtgtggaaaattactttc
ctgcaaaaggatcataacatgaaatgagtcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57782304_57783286
seq2: B6Ng01-234B13.g_67_1048

seq1  GAATTCACTTGGTTAAGTAAGAAAAGTTGTGTCAGATAAAGCTAAAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGGTTAAGTAAGAAAAGTTGTGTCAGATAAAGCTAAAGAGT  50

seq1  GGTCAAACCTATCTTGGAGCTCATAAAACATCATACTGGACAATATGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAACCTATCTTGGAGCTCATAAAACATCATACTGGACAATATGATA  100

seq1  ACAAAGCCTAGGACTTCAGTAATTTTCCTCAGTAAAAATGATTTATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCTAGGACTTCAGTAATTTTCCTCAGTAAAAATGATTTATTTTT  150

seq1  CTTTTAGTTGCAATCACGAGTGCATAATTTCAAATGGAGTTATTTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTTGCAATCACGAGTGCATAATTTCAAATGGAGTTATTTTTATT  200

seq1  GAACACTTTGCACAAGAAAGTTGAAGACCTTGCCGAACTCTGAGAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTTGCACAAGAAAGTTGAAGACCTTGCCGAACTCTGAGAAGCAT  250

seq1  GTCAGCACAGTCATCCATTTACTGTGAAGACCATACTGCTTTGCTCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCACAGTCATCCATTTACTGTGAAGACCATACTGCTTTGCTCTGTT  300

seq1  GGATTATATTATTGTTAAAGTTTAGTATAAAAACATTGCTGTATGCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATATTATTGTTAAAGTTTAGTATAAAAACATTGCTGTATGCCTCA  350

seq1  AGGCAATATTTAGTTGGAATGTGATTGTTCACCAGCATTATTTAATAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATATTTAGTTGGAATGTGATTGTTCACCAGCATTATTTAATAGCT  400

seq1  TAATTCATTTAAAAAGTAAAAAAAAAAAAAAAAAAAAGATAGCTATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATTTAAAAAGTAAAAAAAAAAAAAAAAAAAAGATAGCTATAAAA  450

seq1  ACCTGAATAATAATACAATGGTTTTACAAAATTGGCCCCATGGAAACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAATAATAATACAATGGTTTTACAAAATTGGCCCCATGGAAACCCT  500

seq1  CAAAGCATCCAGGCAATTGCCAAAGCCATTGGGTGCCCTCCTCAGACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATCCAGGCAATTGCCAAAGCCATTGGGTGCCCTCCTCAGACTGA  550

seq1  TGGTAAGGCTCTATTGCAGAAGACAACGTTTACAAAACTTACATCAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGGCTCTATTGCAGAAGACAACGTTTACAAAACTTACATCAGTAA  600

seq1  ACATGGAGAAGTTAAGCTAGTCTGTACTTACTTGTGTCTACTTACAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGAAGTTAAGCTAGTCTGTACTTACTTGTGTCTACTTACAAGTC  650

seq1  TCTACTTGCTAGTCTTTTTTTCTCCACTCACTTGTGTTCATGGTATTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTGCTAGTCTTTTTTTCTCCACTCACTTGTGTTCATGGTATTGGA  700

seq1  AAGTACACAACATACTACTAGAGGAAAAAGATAAACAAAACCCAGATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACAACATACTACTAGAGGAAAAAGATAAACAAAACCCAGATACA  750

seq1  AACCATACAATGTACCTTTGTGACCTGCCTGCAAGAAACATGGGTGCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATACAATGTACCTTTGTGACCTGCCTGCAAGAAACATGGGTGCAAT  800

seq1  AGTTGAGAGGAAAGTTTTGAGAGCAACCAATCACTTACTATTTTATTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGAGGAAAGTTTTGAGAGCAACCAATCACTTACTATTTTATTGGA  850

seq1  GCTCAAGCCTGCTCCATGAGACAGAATCCATGCCCCTCATTGGGTATCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGCCTGCTCCATGAGACAGAATCCATGCCCCTCATTGGGTATCTA  900

seq1  AGAATATAATAGATTGACAATGGACCTAGGGAGTGTGGAAAATTACTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAATAGATTGACAATGGACCTAGGGAGTGTGGAAAATTACTTTC  950

seq1  CTGCAAAAGGATCATAACAATGAAATGAGTCCT  983
      |||||||||||||||||| ||||||||||||||
seq2  CTGCAAAAGGATCATAAC-ATGAAATGAGTCCT  982


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