BAC Information

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BAC

Clone NameB6Ng01-235C11
Chromosome5 (Build37)
Map Location 43,541,332 - 43,542,179
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636612, LOC433883
Downstream geneEG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235C11.bB6Ng01-235C11.g
ACCGA046707GA046708
length632850
definitionB6Ng01-235C11.b B6Ng01-235C11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgtacatatgcatgggggtggggtggggggcagggcatgctgt
gtatctatctgcatgtgcgggtgtgttagaaaagggggaatgataagaag
aaaatgaaagagaaagtaatggattatatgcaacatgatggcaaaggggg
gtaggggtgggcaattgggacaagagaatcagtaagaggcccaaagggat
gatgggaaggaggctgagggaagaagaaaaatgagaattttcatggagga
caatggtaaaggagacaatgtgaagagagacaggtaacaaaagttcttaa
cccatgagctgcaacacccttggggtcatatatcagacatcctgcatata
tcatgactcagtagcaaaattgtagttttgaagtagtaatgaaataattt
tatggttgggatcaccacaccaccatcatctgtattaaaagtctgcagca
ttagagaggttgagaaccacggcattaaaagctatttgaaaagcaacatg
gaaacccactaactgcagaagattcctattatgtgaatgaactttaaatg
gagtcatcatgtgttggggaaggcagtaccctaactagatatcatgccac
caagtaataccccagtgccaagaattggtcac
gaattctgcttcacacatcacatttgctactttattatttattattattt
tggtggtgacgtaggctttattattttttaatcacccgtatttatttcac
cactggcaagctctgagaacagttcctggcaaacaggaattgataattaa
taaattgtctaaatcctagcttaaattccaactatttatgacctacatgt
cttgagtatatagatcaagctttccattgcttatgcttctcataccgaaa
gtgggaaaatttggtttgtccctcataaaatcagtatgaggcttcaccaa
gagaattgtatatggaaatctctagcataaagtagaatttttaaaatgtg
aattttgttgcaaaacttcacagatggtcctagcatgtcttagaaaagaa
atctgcttgttttgatattttcagcagaaagaatcaataaacatttgtaa
acaccggctcagcactgagcccaagaagcactcttggacagagggtaact
gccctaaagaagcaacaaagccttaagagaaacagatccaatggttaagg
attacacttcccaggagaagtacttagaaggtataggaggaaggaaccat
cagacacacttctctaatgcgtatttgaactaaccagacagaggacatac
tgccaacaaggcagaggacctgggcagtctttcacccaacttcccctggt
ggtaaaatcctacacatccacagtgcagcaacagaaccagggcctgccat
tgtttgtatggtagggagttgtagctgtcaacttgcctgaattgagagct
agctagcctgctagtgaaactactttctgggggcatttgtggaaatgttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_43541332_43542179
seq2: B6Ng01-235C11.g_70_919

seq1  GAATTCTGCTTCACACATCACATTTGCTACTTTATTATTTATTATTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTCACACATCACATTTGCTACTTTATTATTTATTATTATTT  50

seq1  TGGTGGTGACGTAGGCTTTATTATTTTTTAATCACCCGTATTTATTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGACGTAGGCTTTATTATTTTTTAATCACCCGTATTTATTTCAC  100

seq1  CACTGGCAAGCTCTGAGAACAGTTCCTGGCAAACAGGAATTGATAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCAAGCTCTGAGAACAGTTCCTGGCAAACAGGAATTGATAATTAA  150

seq1  TAAATTGTCTAAATCCTAGCTTAAATTCCAACTATTTATGACCTACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTCTAAATCCTAGCTTAAATTCCAACTATTTATGACCTACATGT  200

seq1  CTTGAGTATATAGATCAAGCTTTCCATTGCTTATGCTTCTCATACCGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTATATAGATCAAGCTTTCCATTGCTTATGCTTCTCATACCGAAA  250

seq1  GTGGGAAAATTTGGTTTGTCCCTCATAAAATCAGTATGAGGCTTCACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAAATTTGGTTTGTCCCTCATAAAATCAGTATGAGGCTTCACCAA  300

seq1  GAGAATTGTATATGGAAATCTCTAGCATAAAGTAGAATTTTTAAAATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGTATATGGAAATCTCTAGCATAAAGTAGAATTTTTAAAATGTG  350

seq1  AATTTTGTTGCAAAACTTCACAGATGGTCCTAGCATGTCTTAGAAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTGCAAAACTTCACAGATGGTCCTAGCATGTCTTAGAAAAGAA  400

seq1  ATCTGCTTGTTTTGATATTTTCAGCAGAAAGAATCAATAAACATTTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTGTTTTGATATTTTCAGCAGAAAGAATCAATAAACATTTGTAA  450

seq1  ACACCGGCTCAGCACTGAGCCCAAGAAGCACTCTTGGACAGAGGGTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGGCTCAGCACTGAGCCCAAGAAGCACTCTTGGACAGAGGGTAACT  500

seq1  GCCCTAAAGAAGCAACAAAGCCTTAAGAGAAACAGATCCAATGGTTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAAGAAGCAACAAAGCCTTAAGAGAAACAGATCCAATGGTTAAGG  550

seq1  ATTACACTTCCCAGGAGAAGTACTTAGAAGGTATAGGAGGAAGGAACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACTTCCCAGGAGAAGTACTTAGAAGGTATAGGAGGAAGGAACCAT  600

seq1  CAGACACACTTCTCTAATGCGTATTTGAACTAACCAGACAGAGGACATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACTTCTCTAATGCGTATTTGAACTAACCAGACAGAGGACATAC  650

seq1  TGCCAACAAGGCAGAGGACCTGGGCAGTC-TTCACCCAACTTCCCCTGGT  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCCAACAAGGCAGAGGACCTGGGCAGTCTTTCACCCAACTTCCCCTGGT  700

seq1  GGTAAAATCCTACACATCCACAGTGCAGCAACAGAACCAGGGCCTGCCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAATCCTACACATCCACAGTGCAGCAACAGAACCAGGGCCTGCCAT  750

seq1  TGTTTGTATGGTAGGGAGTTGTAGCTGTCAACTTGCCTGAATTGAGAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTATGGTAGGGAGTTGTAGCTGTCAACTTGCCTGAATTGAGAGCT  800

seq1  AGCTAGCCTGCTAGTGAAAACTAC-TTCT-GGGGCATTTGTGGAAATGTT  847
      |||||||||||||||| ||||||| |||| ||||||||||||||||||||
seq2  AGCTAGCCTGCTAGTG-AAACTACTTTCTGGGGGCATTTGTGGAAATGTT  849

seq1  T  848
      |
seq2  T  850