BAC Information

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BAC

Clone NameB6Ng01-235F04
Chromosome5 (Build37)
Map Location 124,834,491 - 124,967,153
singlet/doubletdoublet
Overlap geneSbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik
Upstream geneMlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1
Downstream geneRpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235F04.bB6Ng01-235F04.g
ACCGA046826GA046827
length927900
definitionB6Ng01-235F04.b B6Ng01-235F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,966,231 - 124,967,153)(124,834,491 - 124,835,383)
sequence
gaattcacactcccagatttgctcactgagctttttaaccttagtcactc
tgtgggtctcttgaagataatatgaggacagggtcttgctaggtagccca
ggctgacctcacacttgcggcgaccctcctgcctttgtctctatcgtgct
aggatggcaggtgtgtgccaccatcatatgctaggtttttgaattgtttt
cttctcttgtgtatctgtgcttgagtctgtgtctgcgtccctcgtttctc
tccccctttatacactgacacaggcactctcagtcagaccccacagctcg
ttgatattgatggttgatcctctgcttctgtctttggaggctggactgtc
agtcaagctgccacgcccaccgagcatctcagtgggttctggaaactcga
accctgatcttgtgtatacttggtactgagctctctcagcaggcctgaat
tctgatttttatctttatttttttagagctaggataggagtggtggcaag
gtctcactgtagctcagtctaacctggaccttgcagtgtagactaggcta
ccctcaaacccacagagatccaactgcctctgcctctggagtgctgggat
tggtctatgctgctagacctggctcaccaaatacccttcttattttagac
ggggtctctctatgtagcccaagctggtctcatactcactatgcagacca
ggctggctttgaacttatagagttccctggaatctgggactgaagaaatg
caccactacaccctgctttcaccgaattgtttgaattcgcccgaaaggca
ccatatgagtgggaagtaggggtgctcagtacatcccctgcctcagcaat
ctcctgggatagtggagggacgttgtcctggctgcccaccaagttgccgt
gtctcaatgatggttggtgggtggtgg
gaattcctgagcgatcctctacattaatcaagcccactcctatcagtcct
tgccgaacgtctgtaagaaaacaaatttatcaaaaatcttcacaatccaa
ataactcaaggagctgttgatgtagcatgaaggtttaacatacagaggct
gggagagatggctctgcaatcaagaacactggtcgctcttccaaaggaca
aggcagtgtttaattcagtgcctcaaggccactcataaccgaggatctga
ggacctttacacaaacatacattcaggcaaaatgccattgcacatgttcc
agcaatgacaggcttgatgggacttttataatagataggtttagtgagtg
gtacaactgagtgctagacatctgatatagtaggcccaaaaccattttca
atcctaagaactgaaagaccaaagagacagagagaggaatatgtgtggtc
tccaacaaagatatacaaataagccgggcgtggtggcgcacgcctttaat
cccagcacttgggaggcagaggcaggcagagtctacaaggccagcctggt
ctacaaagtgagtgccaggacagccagggctacacagagaaaccctgtct
cgaaaaaccaaaaaaaaaaataaataaataaataaatatatatatatata
tatatatatatatatatatacacaaataagataataggactaaatataga
tcaacaggactcctttcaggaatgaatcctactgggttgaaaataaaaat
tcacatacatgtaaaagataccatatgccagcaggtgcgcctccatcaaa
atgaaactattgaaaactgtgttggcccatcatggtgggtaccacattgc
ttataaattccagaaaaaaaggcagaggcagagatctcacagaagcgttc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_124966231_124967153
seq2: B6Ng01-235F04.b_45_971 (reverse)

seq1  CCACCA-CCACC-ACCATCATTGAGACACGGC-ACTTGGTGGGCAGCCAG  47
      |||||| ||||| ||||||||||||||||||| |||||||||||||||||
seq2  CCACCACCCACCAACCATCATTGAGACACGGCAACTTGGTGGGCAGCCAG  50

seq1  GACAACGTCCCTCCACTATCCCAGGAGATTGCTGAGGCAGGGGATGTACT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACGTCCCTCCACTATCCCAGGAGATTGCTGAGGCAGGGGATGTACT  100

seq1  GAGCA-CCCTACTTCCCACTCATATGGTGCCTTTCGGGCGAATTCAAACA  146
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCCCTACTTCCCACTCATATGGTGCCTTTCGGGCGAATTCAAACA  150

seq1  ATTCGGTGAAAGCAGGGTGTAGTGGTGCATTTCTTCAGTCCCAGATTCCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGTGAAAGCAGGGTGTAGTGGTGCATTTCTTCAGTCCCAGATTCCA  200

seq1  GGGAACTCTATAAGTTCAAAGCCAGCCTGGTCTGCATAGTGAGTATGAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTCTATAAGTTCAAAGCCAGCCTGGTCTGCATAGTGAGTATGAGA  250

seq1  CCAGCTTGGGCTACATAGAGAGACCCCGTCTAAAATAAGAAGGGTATTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGGGCTACATAGAGAGACCCCGTCTAAAATAAGAAGGGTATTTG  300

seq1  GTGAGCCAGGTCTAGCAGCATAGACCAATCCCAGCACTCCAGAGGCAGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCAGGTCTAGCAGCATAGACCAATCCCAGCACTCCAGAGGCAGAG  350

seq1  GCAGTTGGATCTCTGTGGGTTTGAGGGTAGCCTAGTCTACACTGCAAGGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGGATCTCTGTGGGTTTGAGGGTAGCCTAGTCTACACTGCAAGGT  400

seq1  CCAGGTTAGACTGAGCTACAGTGAGACCTTGCCACCACTCCTATCCTAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTAGACTGAGCTACAGTGAGACCTTGCCACCACTCCTATCCTAGC  450

seq1  TCTAAAAAAATAAAGATAAAAATCAGAATTCAGGCCTGCTGAGAGAGCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAAATAAAGATAAAAATCAGAATTCAGGCCTGCTGAGAGAGCTC  500

seq1  AGTACCAAGTATACACAAGATCAGGGTTCGAGTTTCCAGAACCCACTGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAAGTATACACAAGATCAGGGTTCGAGTTTCCAGAACCCACTGAG  550

seq1  ATGCTCGGTGGGCGTGGCAGCTTGACTGACAGTCCAGCCTCCAAAGACAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCGGTGGGCGTGGCAGCTTGACTGACAGTCCAGCCTCCAAAGACAG  600

seq1  AAGCAGAGGATCAACCATCAATATCAACGAGCTGTGGGGTCTGACTGAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGGATCAACCATCAATATCAACGAGCTGTGGGGTCTGACTGAGA  650

seq1  GTGCCTGTGTCAGTGTATAAAGGGGGAGAGAAACGAGGGACGCAGACACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGTGTCAGTGTATAAAGGGGGAGAGAAACGAGGGACGCAGACACA  700

seq1  GACTCAAGCACAGATACACAAGAGAAGAAAACAATTCAAAAACCTAGCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGCACAGATACACAAGAGAAGAAAACAATTCAAAAACCTAGCAT  750

seq1  ATGATGGTGGCACACACCTGCCATCCTAGCACGATAGAGACAAAGGCAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTGGCACACACCTGCCATCCTAGCACGATAGAGACAAAGGCAGG  800

seq1  AGGGTCGCCGCAAGTGTGAGGTCAGCCTGGGCTACCTAGCAAGACCCTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCGCCGCAAGTGTGAGGTCAGCCTGGGCTACCTAGCAAGACCCTGT  850

seq1  CCTCATATTATCTTCAAGAGACCCACAGAGTGACTAAGGTTAAAAAGCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATATTATCTTCAAGAGACCCACAGAGTGACTAAGGTTAAAAAGCTC  900

seq1  AGTGAGCAAATCTGGGAGTGTGAATTC  923
      |||||||||||||||||||||||||||
seq2  AGTGAGCAAATCTGGGAGTGTGAATTC  927

seq1: chr5_124834491_124835383
seq2: B6Ng01-235F04.g_66_965

seq1  GAATTCCTGAGCGATCCTCTACATTAATCAAGCCCACTCCTATCAGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGCGATCCTCTACATTAATCAAGCCCACTCCTATCAGTCCT  50

seq1  TGCCGAACGTCTGTAAGAAAACAAATTTATCAAAAATCTTCACAATCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGAACGTCTGTAAGAAAACAAATTTATCAAAAATCTTCACAATCCAA  100

seq1  ATAACTCAAGGAGCTGTTGATGTAGCATGAAGGTTTAACATACAGAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCAAGGAGCTGTTGATGTAGCATGAAGGTTTAACATACAGAGGCT  150

seq1  GGGAGAGATGGCTCTGCAATCAAGAACACTGGTCGCTCTTCCAAAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGATGGCTCTGCAATCAAGAACACTGGTCGCTCTTCCAAAGGACA  200

seq1  AGGCAGTGTTTAATTCAGTGCCTCAAGGCCACTCATAACCGAGGATCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTGTTTAATTCAGTGCCTCAAGGCCACTCATAACCGAGGATCTGA  250

seq1  GGACCTTTACACAAACATACATTCAGGCAAAATGCCATTGCACATGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTTACACAAACATACATTCAGGCAAAATGCCATTGCACATGTTCC  300

seq1  AGCAATGACAGGCTTGATGGGACTTTTATAATAGATAGGTTTAGTGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGACAGGCTTGATGGGACTTTTATAATAGATAGGTTTAGTGAGTG  350

seq1  GTACAACTGAGTGCTAGACATCTGATATAGTAGGCCCAAAACCATTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACTGAGTGCTAGACATCTGATATAGTAGGCCCAAAACCATTTTCA  400

seq1  ATCCTAAGAACTGAAAGACCAAAGAGACAGAGAGAGGAATATGTGTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAGAACTGAAAGACCAAAGAGACAGAGAGAGGAATATGTGTGGTC  450

seq1  TCCAACAAAGATATACAAATAAGCCGGGCGTGGTGGCGCACGCCTTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAAAGATATACAAATAAGCCGGGCGTGGTGGCGCACGCCTTTAAT  500

seq1  CCCAGCACTTGGGAGGCAGAGGCAGGCAGAGTCTACAAGGCCAGCCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGGGAGGCAGAGGCAGGCAGAGTCTACAAGGCCAGCCTGGT  550

seq1  CTACAAAGTGAGTGCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGAGTGCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCT  600

seq1  CGAAAAACCAAAAAAAAAAATAAATAAATAAATAAATATATATATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAACCAAAAAAAAAAATAAATAAATAAATAAATATATATATATATA  650

seq1  TATATATATATATATATATACACAAATAAGATAATAGGACT-AATATAGA  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATATATATATATATATATACACAAATAAGATAATAGGACTAAATATAGA  700

seq1  TCAACAGGACTCCTTTCAGGAATGAATCCTACTGGGTTGAAAATAAAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGACTCCTTTCAGGAATGAATCCTACTGGGTTGAAAATAAAAAT  750

seq1  TCACATACATGT-AAAGATACCATATGCCAGCAGGTGCGCCT-CATCAAA  797
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  TCACATACATGTAAAAGATACCATATGCCAGCAGGTGCGCCTCCATCAAA  800

seq1  ATGAAACTATTGAAAACTGTGTTTGCCCATCATGGT-GGTA-CACATTGC  845
      ||||||||||||||||||||||| |||||||||||| |||| ||||||||
seq2  ATGAAACTATTGAAAACTGTGTTGGCCCATCATGGTGGGTACCACATTGC  850

seq1  -TATAAATTCCAGCAAAAAAGGCAGAGGCAGAGATCTCACAG-AGCGTTC  893
       |||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  TTATAAATTCCAGAAAAAAAGGCAGAGGCAGAGATCTCACAGAAGCGTTC  900