BAC Information

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BAC

Clone NameB6Ng01-235I02
Chromosome5 (Build37)5 (Build37)
Map Location 50,016,842 - 50,017,85950,137,355 - 50,138,369
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnip4, LOC100041668, LOC100041659, EG433885
Downstream geneLOC666223, Gpr125, EG637307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235I02.bB6Ng01-235I02.g
ACCGA046966GA046967
length1,0221,022
definitionB6Ng01-235I02.b B6Ng01-235I02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,016,842 - 50,017,859)(50,137,355 - 50,138,369)
sequence
gaattcaaagaacagtgttgtttctgtttatttatgcttataacttcaga
tgactgaatgccagtcatgtctgtataacatcacatttaaagtaaaatag
cttttgtgtgagtcatcattaatttagtcttttgatagtttatggtggtc
atactacttggtgacaagtaagaagtttggctcaccatcgcttagatgtt
tgcttcttatagtttcaagccttggagtacttcaagacaggattgtagaa
acaatatcacagcaatgattttgcttaccccccaatctccatgtagtatc
actttttaactggatagcattcactggaggcttgatgtcacccaagatac
agagtttttctttttctttttctttttctttttctttttctttttctttt
tctccttctttttctttttcaacaagtacatttctatagctgtctactct
atcagctacatgtgcaagagaacatgacacagtcactgatttctgtgctt
tgttcaatggtttacattgagtgcactgacgacatgaaattgtgtttact
tcttatgtttcccagatctgggcacaaggtagacctgatgtgccttatcc
ttaatttagaagtttaaggaagaaaaaaaacaaccccccccaaaaaaaca
gactagttccaactctgaggccaacacaaaacataaagaaaggaagtaga
tatggaaaactctctgctagccaagtagaagcacacctttaatcccaact
cttggaaagcagaggcaggaggatctttgtgagtttaaagtcagtctggt
atatatagtgagttctgagacaaccaggactttatagagagaccctgtct
ttaaaaataaacataaccccggagctctggactctagctgcatatgtatc
aaaagatggcctagtcggccatcactggaaagagaagcccattggacaac
gaaaactttatatgccccagtacaggggaacgccaggcccaaaaaggggg
gagtggggtggggtaggggagt
gaattcctgctcaaattaaggtttattcaattgtaaaattccaaactgtt
atcaagcagctcataagcatagacacgggaaacaaaggaaagatgggtaa
aaaccatatggctaataaaactaaggcaagacattaaaacactctctagt
taaatcttataatttttagtccattgaacttaattatatgacaaatgtaa
ttttccttattttttcacagaaggactagtggactaggagtgagtgggtg
gagcgagcactagctgtcaataacagatctgttgtcaacatatatagcta
cttgttgtttttgtgggaccctaaagcatctccatgcacttctgaaacaa
accaaagtagcaacaatgaaagagacacaaactgattagttgtcctagtt
cagggatgatgtagcttgatgaaatagtctagactttctaaacttagtta
agaagcaaatgtggaaaaaaaatgaggggcactttgagaaagttgatctg
tgatgactcaactagaggcattcatgggtcactaatggtgatggcttcta
caactaccttaggctttaaaaattcatcgatgaaatcatttcctctgaat
gaaatttaaaaaaaatacatacacataaactctctctatatttcttatac
caagaatatattgaaaatgctatctaaacagtgttaggacaatatcattt
atgtcaacaacagtctaaacagatgcagtgtttttctgccagatattttg
atctgtgtttgcttgaatttgtaaatacagattacatgagtatggaattc
cccacagggaaagtatgtcaaatgttttaggaattaaggtttaggctgaa
tcatatcatttgccttacttttctaacaattttagaacataataaagctg
attattaaaaagatcccatgcaaaacatatatattacattcatatatatg
gtatatgtctaatatatgtttggttttcaatatatgtgggatgtaaatag
tataatctatgggatttccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_50016842_50017859
seq2: B6Ng01-235I02.b_45_1066

seq1  GAATTCAAAGAACAGTGTTGTTTCTGTTTATTTATGCTTATAACTTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAACAGTGTTGTTTCTGTTTATTTATGCTTATAACTTCAGA  50

seq1  TGACTGAATGCCAGTCATGTCTGTATAACATCACATTTAAAGTAAAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAATGCCAGTCATGTCTGTATAACATCACATTTAAAGTAAAATAG  100

seq1  CTTTTGTGTGAGTCATCATTAATTTAGTCTTTTGATAGTTTATGGTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGTGAGTCATCATTAATTTAGTCTTTTGATAGTTTATGGTGGTC  150

seq1  ATACTACTTGGTGACAAGTAAGAAGTTTGGCTCACCATCGCTTAGATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACTTGGTGACAAGTAAGAAGTTTGGCTCACCATCGCTTAGATGTT  200

seq1  TGCTTCTTATAGTTTCAAGCCTTGGAGTACTTCAAGACAGGATTGTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTATAGTTTCAAGCCTTGGAGTACTTCAAGACAGGATTGTAGAA  250

seq1  ACAATATCACAGCAATGATTTTGCTTACCCCCCAATCTCCATGTAGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATCACAGCAATGATTTTGCTTACCCCCCAATCTCCATGTAGTATC  300

seq1  ACTTTTTAACTGGATAGCATTCACTGGAGGCTTGATGTCACCCAAGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAACTGGATAGCATTCACTGGAGGCTTGATGTCACCCAAGATAC  350

seq1  AGAGTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTT  400

seq1  TCTCCTTCTTTTTCTTTTTCAACAAGTACATTTCTATAGCTGTCTACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCTTTTTCTTTTTCAACAAGTACATTTCTATAGCTGTCTACTCT  450

seq1  ATCAGCTACATGTGCAAGAGAACATGACACAGTCACTGATTTCTGTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTACATGTGCAAGAGAACATGACACAGTCACTGATTTCTGTGCTT  500

seq1  TGTTCAATGGTTTACATTGAGTGCACTGACGACATGAAATTGTGTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATGGTTTACATTGAGTGCACTGACGACATGAAATTGTGTTTACT  550

seq1  TCTTATGTTTCCCAGATCTGGGCACAAGGTAGACCTGATGTGCCTTATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTTTCCCAGATCTGGGCACAAGGTAGACCTGATGTGCCTTATCC  600

seq1  TTAATTTAGAAGTTTAAGGAAGAAAAAAAACAACCCCCCCCAAAAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTAGAAGTTTAAGGAAGAAAAAAAACAACCCCCCCCAAAAAAACA  650

seq1  GACTAGTTCCAACTCTGAGGCCAACACAAAACATAAAGAAAGGAAGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTTCCAACTCTGAGGCCAACACAAAACATAAAGAAAGGAAGTAGA  700

seq1  TATGGAAAACTCTCTGCTAGCCAAGTAGAAGCACACCTTTAATCCCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAAACTCTCTGCTAGCCAAGTAGAAGCACACCTTTAATCCCAACT  750

seq1  CTTGGAAAGCAGAGGCAGGAGGATCTTTGTGAGTTTAAAGTCAGTCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAGCAGAGGCAGGAGGATCTTTGTGAGTTTAAAGTCAGTCTGGT  800

seq1  ATATATAGTGAGTTCTGAGACAACCAGGACTTTATAGAGAGACCCTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGTGAGTTCTGAGACAACCAGGACTTTATAGAGAGACCCTGTCT  850

seq1  TTAAAAATAAACATAACCCCGGAGCTCTGGACTCTAGCTGCATATGTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAACATAACCCCGGAGCTCTGGACTCTAGCTGCATATGTATC  900

seq1  AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAAGCCCATTGGAC-AC  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAAGCCCATTGGACAAC  950

seq1  GAAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAA-GGGG  998
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  GAAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGCCCAAAAAGGGGG  1000

seq1  GAGTGGG--TGGGTAGGGGAGT  1018
      |||||||   ||||||||||||
seq2  GAGTGGGGTGGGGTAGGGGAGT  1022

seq1: chr5_50137355_50138369
seq2: B6Ng01-235I02.g_69_1090

seq1  GAATTCCTGCTCAAATTAAGGTTTATTCAATTGTAAAATTCCAAACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTCAAATTAAGGTTTATTCAATTGTAAAATTCCAAACTGTT  50

seq1  ATCAAGCAGCTCATAAGCATAGACACGGGAAACAAAGGAAAGATGGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCAGCTCATAAGCATAGACACGGGAAACAAAGGAAAGATGGGTAA  100

seq1  AAACCATATGGCTAATAAAACTAAGGCAAGACATTAAAACACTCTCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATATGGCTAATAAAACTAAGGCAAGACATTAAAACACTCTCTAGT  150

seq1  TAAATCTTATAATTTTTAGTCCATTGAACTTAATTATATGACAAATGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTATAATTTTTAGTCCATTGAACTTAATTATATGACAAATGTAA  200

seq1  TTTTCCTTATTTTTTCACAGAAGGACTAGTGGACTAGGAGTGAGTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTATTTTTTCACAGAAGGACTAGTGGACTAGGAGTGAGTGGGTG  250

seq1  GAGCGAGCACTAGCTGTCAATAACAGATCTGTTGTCAACATATATAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGAGCACTAGCTGTCAATAACAGATCTGTTGTCAACATATATAGCTA  300

seq1  CTTGTTGTTTTTGTGGGACCCTAAAGCATCTCCATGCACTTCTGAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTTTTTGTGGGACCCTAAAGCATCTCCATGCACTTCTGAAACAA  350

seq1  ACCAAAGTAGCAACAATGAAAGAGACACAAACTGATTAGTTGTCCTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTAGCAACAATGAAAGAGACACAAACTGATTAGTTGTCCTAGTT  400

seq1  CAGGGATGATGTAGCTTGATGAAATAGTCTAGACTTTCTAAACTTAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGATGTAGCTTGATGAAATAGTCTAGACTTTCTAAACTTAGTTA  450

seq1  AGAAGCAAATGTGGAAAAAAAATGAGGGGCACTTTGAGAAAGTTGATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAATGTGGAAAAAAAATGAGGGGCACTTTGAGAAAGTTGATCTG  500

seq1  TGATGACTCAACTAGAGGCATTCATGGGTCACTAATGGTGATGGCTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTCAACTAGAGGCATTCATGGGTCACTAATGGTGATGGCTTCTA  550

seq1  CAACTACCTTAGGCTTTAAAAATTCATCGATGAAATCATTTCCTCTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACCTTAGGCTTTAAAAATTCATCGATGAAATCATTTCCTCTGAAT  600

seq1  GAAATTTAAAAAAAATACATACACATAAACTCTCTCTATATTTCTTATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTAAAAAAAATACATACACATAAACTCTCTCTATATTTCTTATAC  650

seq1  CAAGAATATATTGAAAATGCTATCTAAACAGTGTTAGGACAATATCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATATATTGAAAATGCTATCTAAACAGTGTTAGGACAATATCATTT  700

seq1  ATGTCAACAACAGTCTAAACAGATGCAGTGTTTTTCTGCCAGATATTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACAACAGTCTAAACAGATGCAGTGTTTTTCTGCCAGATATTTTG  750

seq1  ATCTGTGTTTGCTTGAATTTGTAAATACAGATTACATGAGTATGGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTTTGCTTGAATTTGTAAATACAGATTACATGAGTATGGAATTC  800

seq1  CCCACAGGGAAAGTATGTCAAATG-TTTAGGAA-TAAGGTTTAGGCTGAA  848
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  CCCACAGGGAAAGTATGTCAAATGTTTTAGGAATTAAGGTTTAGGCTGAA  850

seq1  TCATATCATTTG-CTTACTTTCCTAACAATTTTAGAACATAATAAAGCTG  897
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  TCATATCATTTGCCTTACTTTTCTAACAATTTTAGAACATAATAAAGCTG  900

seq1  A-TATTAAAAAGAT-CCATGCAAAACATATATATTTACATTCATATATAT  945
      | |||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  ATTATTAAAAAGATCCCATGCAAAACATATATA-TTACATTCATATATAT  949

seq1  -GTATATGTCTAATATATGTTTGTTTTTCAATATATGT-GGATGTAAATA  993
       |||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  GGTATATGTCTAATATATGTTTGGTTTTCAATATATGTGGGATGTAAATA  999

seq1  TGTAT-ATCTAT-GGAATTCCTTT  1015
       |||| |||||| ||| |||||||
seq2  -GTATAATCTATGGGATTTCCTTT  1022