BAC Information

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BAC

Clone NameB6Ng01-235M02
Chromosome5 (Build37)
Map Location 77,429,956 - 77,578,112
singlet/doubletdoublet
Overlap geneArl9, 1700023E05Rik, Hod
Upstream geneGabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72
Downstream geneSpink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235M02.bB6Ng01-235M02.g
ACCGA047152GA047153
length8331,116
definitionB6Ng01-235M02.b B6Ng01-235M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,429,956 - 77,430,787)(77,576,995 - 77,578,112)
sequence
gaattcatgtggaattgggacaggggtggtgtaagttgcgttctggggtg
gtggttgaaactggggaaagatggggagtcttccagggattctggtgccc
taggcattcttaacttagaggcacgactggttgagtaaattgggagttga
cgtctccagatagctcaaactctttaggagtttcttcaacactgccaaat
aatgcctttgtgccttctggggcaaggggtgcctaaggacctcttgccat
gacagtccttgtctgtttctcccagttctctgatgaaggtcaccaggttc
cccaagattgggctagatccaacccccttagcatccttgcccttccctct
tccactggacagtcctggtgatctcaagttgaacgaaatcagctgccagc
cccaggcaggtgcgcctacgcaaaatgtcagaaatgccagatagtcagct
gtgctcactggcaggactgcggtgaccatgggtgtggcctacgccttgtg
gtcctacgtctccaccttgagccccacaccagggccacacctgccaggat
cgggggcggctccggcgcgcgggcgcgcaggggacagaaagggaaaggcg
gtggcggggatggagagggggaagactaagaaagagagtcaaaggttttc
ttcgagcactagggaaacagcagtaaaggtagagaaggaaaaaaagaagg
acgtggaagtaaaaagcaaggagaaggggaaagagaaggagaaggaagag
gagaaaaagaagtctgtggaactgaaaaacaagaaggggaaagagatagg
gaaaggagaagagagagggaaaggaggtaggtc
gaattctttgtttagctctgtaccccatttttaatggggttatttgaatt
tctggagttcagcttcttgagctctttgtatatattggatattagtcccc
tatcagatttaggactggtaaaaattctttcccaatctgttggtggcctt
tttgtcttattgacagtatcttttgcccttcagaagctttgcaattttat
gaggtcccatttgttgattcttgatcttacagcacaagctttgaacttgt
ggcagtccttctgcctcaacctcttgagtatttgagtatcgtcatggtag
acacaagtcaccatgatgggctgagacttatctttaattccagtgattat
ccattactgtgtatgcattgaatgagaaagtagatgggcaaatacataaa
tatattctattctatattctatatattctataaacagtgcagggccgagt
ctgtataaacagaataaatcaagagctctaggagaccagaagtccagttg
tttttctccttcctgaagctctcctattgagatttattctcattgctttt
atctctgttgaggactggaaatttagcttggttggtaaagtgcttgcctg
gcacgtatgaaaccctgggctccaccccagcacttcagcttctgtctgta
ctttcttcccgactacagtcatttcaatgtgagatcttcccacgggctca
agcatttctgtacctggtccccaactgctgctgctgtttatgaaaggttc
tggaatctctagaaagtgaggcctcactagaggaaatgtgtcactagaga
aagacttggaggttttatagcctaaccctacttcctgcctcctctctctg
tttcctgctccactaagatatgaagaagcgaggaggcccagctgctcatg
ctcagctgccccttgatttgttttcctctctgggggtgggctatcccctc
tggctgtgatccaagtaaagctttcctcttaacttactcttgcttgcttc
gatgtttttgtcacagccttgagcaagttcactaacacacatgaacgcca
accactctttgttatacaacagctcccttgctgattcaccctctcaatgc
aattgcttgtcaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77429956_77430787
seq2: B6Ng01-235M02.b_46_878

seq1  GAATTCATGTGGAATTGGGACAGGGGTGGTGTAAGTTGCGTTCTGGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGGAATTGGGACAGGGGTGGTGTAAGTTGCGTTCTGGGGTG  50

seq1  GTGGTTGAAACTGGGGAAAGATGGGGAGTCTTCCAGGGATTCTGGTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGAAACTGGGGAAAGATGGGGAGTCTTCCAGGGATTCTGGTGCCC  100

seq1  TAGGCATTCTTAACTTAGAGGCACGACTGGTTGAGTAAATTGGGAGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATTCTTAACTTAGAGGCACGACTGGTTGAGTAAATTGGGAGTTGA  150

seq1  CGTCTCCAGATAGCTCAAACTCTTTAGGAGTTTCTTCAACACTGCCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCCAGATAGCTCAAACTCTTTAGGAGTTTCTTCAACACTGCCAAAT  200

seq1  AATGCCTTTGTGCCTTCTGGGGCAAGGGGTGCCTAAGGACCTCTTGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTTGTGCCTTCTGGGGCAAGGGGTGCCTAAGGACCTCTTGCCAT  250

seq1  GACAGTCCTTGTCTGTTTCTCCCAGTTCTCTGATGAAGGTCACCAGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCCTTGTCTGTTTCTCCCAGTTCTCTGATGAAGGTCACCAGGTTC  300

seq1  CCCAAGATTGGGCTAGATCCAACCCCCTTAGCATCCTTGCCCTTCCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGATTGGGCTAGATCCAACCCCCTTAGCATCCTTGCCCTTCCCTCT  350

seq1  TCCACTGGACAGTCCTGGTGATCTCAAGTTGAACGAAATCAGCTGCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGGACAGTCCTGGTGATCTCAAGTTGAACGAAATCAGCTGCCAGC  400

seq1  CCCAGGCAGGTGCGCCTACGCAAAATGTCAGAAATGCCAGATAGTCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCAGGTGCGCCTACGCAAAATGTCAGAAATGCCAGATAGTCAGCT  450

seq1  GTGCTCACTGGCAGGACTGCGGTGACCATGGGTGTGGCCTACGCCTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCACTGGCAGGACTGCGGTGACCATGGGTGTGGCCTACGCCTTGTG  500

seq1  GTCCTACGTCTCCACCTTGAGCCCCACACCAGGGCCACACCTGCCAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACGTCTCCACCTTGAGCCCCACACCAGGGCCACACCTGCCAGGAT  550

seq1  CGGGGGCGGCTCCGGCGCGCGGGCGCGCAGGGGACAGAAAGGGAAAGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGCGGCTCCGGCGCGCGGGCGCGCAGGGGACAGAAAGGGAAAGGCG  600

seq1  GTGGCGGGGATGGAGAGGGGGAAGACTAAGAAAGAGAGTCAAAGGTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGGGGATGGAGAGGGGGAAGACTAAGAAAGAGAGTCAAAGGTTTTC  650

seq1  TTCGAGCACTAGGGAAACAGCAGTAAAGGTAGAGAAGGAAAAAAAGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGCACTAGGGAAACAGCAGTAAAGGTAGAGAAGGAAAAAAAGAAGG  700

seq1  ACGTGGAAGTAAAAAGCAAGGAGAAGGGGAAAGAGAAGGAGAAGGAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGAAGTAAAAAGCAAGGAGAAGGGGAAAGAGAAGGAGAAGGAAGAG  750

seq1  GAGAAAAAGAAGTCTGTGGAACTGAAAAACAAGAAGGGGAAAGAGATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGAAGTCTGTGGAACTGAAAAACAAGAAGGGGAAAGAGATAGG  800

seq1  GAAAGGAGAAGAGAGAGGG-AAGGAGGTAGGTC  832
      ||||||||||||||||||| |||||||||||||
seq2  GAAAGGAGAAGAGAGAGGGAAAGGAGGTAGGTC  833

seq1: chr5_77576995_77578112
seq2: B6Ng01-235M02.g_64_1179 (reverse)

seq1  TGTTTGACCAGCAA-TGCAATGAGA-GGTGAACCAGCAAGGGAGCTGGTG  48
      |||||||| ||||| |||| ||||| |||||| ||||||||||||| || 
seq2  TGTTTGACAAGCAATTGCATTGAGAGGGTGAATCAGCAAGGGAGCT-GTT  49

seq1  GTATAAACAAAGAAGTGTTGGCGTTTCATTGGTGTGTTAGTGACCTTGCT  98
      |||| ||||||||   ||||||| |||||  |||||||||||| ||||||
seq2  GTAT-AACAAAGAGTGGTTGGCG-TTCAT--GTGTGTTAGTGAACTTGCT  95

seq1  CAAGGCTGTGAC-AAAACATCGAAGCAAGCAAGAGTAAGTTAAGAGGAAA  147
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGTGACAAAAACATCGAAGCAAGCAAGAGTAAGTTAAGAGGAAA  145

seq1  GCTTTACTTTGGATCACAGCCAGAGGGGATAGCCCA-CCCCAGAGAGGAA  196
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  GCTTTAC-TTGGATCACAGCCAGAGGGGATAGCCCACCCCCAGAGAGGAA  194

seq1  AACAAATCAAGGGGCAGCTGAGCATGAGCAGCTGGGCCTCCTCGCTTCTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCAAGGGGCAGCTGAGCATGAGCAGCTGGGCCTCCTCGCTTCTT  244

seq1  CATATCTTAGTGGAGCAGGAAACAGAGAGAGGAGGCAGGAAGTAGGGTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTAGTGGAGCAGGAAACAGAGAGAGGAGGCAGGAAGTAGGGTTA  294

seq1  GGCTATAAAACCTCCAAGTCTTTCTCTAGTGACACATTTCCTCTAGTGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAAAACCTCCAAGTCTTTCTCTAGTGACACATTTCCTCTAGTGAG  344

seq1  GCCTCACTTTCTAGAGATTCCAGAACCTTTCATAAACAGCAGCAGCAGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTTTCTAGAGATTCCAGAACCTTTCATAAACAGCAGCAGCAGTT  394

seq1  GGGGACCAGGTACAGAAATGCTTGAGCCCGTGGGAAGATCTCACATTGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCAGGTACAGAAATGCTTGAGCCCGTGGGAAGATCTCACATTGAA  444

seq1  ATGACTGTAGTCGGGAAGAAAGTACAGACAGAAGCTGAAGTGCTGGGGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTAGTCGGGAAGAAAGTACAGACAGAAGCTGAAGTGCTGGGGTG  494

seq1  GAGCCCAGGGTTTCATACGTGCCAGGCAAGCACTTTACCAACCAAGCTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGGGTTTCATACGTGCCAGGCAAGCACTTTACCAACCAAGCTAA  544

seq1  ATTTCCAGTCCTCAACAGAGATAAAAGCAATGAGAATAAATCTCAATAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGTCCTCAACAGAGATAAAAGCAATGAGAATAAATCTCAATAGG  594

seq1  AGAGCTTCAGGAAGGAGAAAAACAACTGGACTTCTGGTCTCCTAGAGCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTCAGGAAGGAGAAAAACAACTGGACTTCTGGTCTCCTAGAGCTC  644

seq1  TTGATTTATTCTGTTTATACAGACTCGGCCCTGCACTGTTTATAGAATAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTATTCTGTTTATACAGACTCGGCCCTGCACTGTTTATAGAATAT  694

seq1  ATAGAATATAGAATAGAATATATTTATGTATTTGCCCATCTACTTTCTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATATAGAATAGAATATATTTATGTATTTGCCCATCTACTTTCTCA  744

seq1  TTCAATGCATACACAGTAATGGATAATCACTGGAATTAAAGATAAGTCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCATACACAGTAATGGATAATCACTGGAATTAAAGATAAGTCTC  794

seq1  AGCCCATCATGGTGACTTGTGTCTACCATGACGATACTCAAATACTCAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCATGGTGACTTGTGTCTACCATGACGATACTCAAATACTCAAG  844

seq1  AGGTTGAGGCAGAAGGACTGCCACAAGTTCAAAGCTTGTGCTGTAAGATC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAGGCAGAAGGACTGCCACAAGTTCAAAGCTTGTGCTGTAAGATC  894

seq1  AAGAATCAACAAATGGGACCTCATAAAATTGCAAAGCTTCTGAAGGGCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCAACAAATGGGACCTCATAAAATTGCAAAGCTTCTGAAGGGCAA  944

seq1  AAGATACTGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGAATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGAATT  994

seq1  TTTACCAGTCCTAAATCTGATAGGGGACTAATATCCAATATATACAAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAGTCCTAAATCTGATAGGGGACTAATATCCAATATATACAAAGA  1044

seq1  GCTCAAGAAGCTGAACTCCAGAAATTCAAATAACCCCATTAAAAATGGGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGAAGCTGAACTCCAGAAATTCAAATAACCCCATTAAAAATGGGG  1094

seq1  TACAGAGCTAAACAAAGAATTC  1118
      ||||||||||||||||||||||
seq2  TACAGAGCTAAACAAAGAATTC  1116