BAC Information

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BAC

Clone NameB6Ng01-236J09
Chromosome5 (Build37)
Map Location 105,150,196 - 105,150,624
singlet/doubletsinglet
Overlap genenone
Upstream geneAff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963
Downstream geneLOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236J09.bB6Ng01-236J09.g
ACCGA047768GA047769
length1,111423
definitionB6Ng01-236J09.b B6Ng01-236J09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgatccacttagatttgacctttgtacaaggagataagaatg
gaacaattcacattcttctacatgctaaccaccactttagctagcaccat
ttgttgaaaatgctttcttctttctactggatggttttagctccattgtc
aaagatcaagtgaccataggtgtgtaggttcatttctgggtcttcaattc
tatcccattgatctacctatctgtcactgtacaagttccatgcatttttt
atcacaactgctctgtagtacaactacaggtctgacatggtgattccacc
agaggttcttttattgttgagaatagtttttggtatcctatgtttttttt
gtgattccagatgaatttgcaaattgacctttctaactcagtgaagaatt
gagttggaattttgatggggattacattgaatctgtagatgtttccggca
ggatagccatttttagtatatgaatcctgccaatctacgagcatgggaga
tctttccatcttctgagatcttcttcgatgtctttctttgaagacttgaa
gttcttatcatacagatctttcactgccttagttagagtcacaccaaggt
attttatatcatttgtgactattgtgaagagtgttgtttccctaatttct
ttctccacctgtttatcctttgtgtagagaaaggccactgatttgtttga
gttaattttatatctagctacttcactgaaggtgtttatcaggtttagga
gttctctggtggaatttttggggtcacttagatatactaccgtgatgagg
cctacttgatcatgatgaatgatcattttgatgtgttcttggattcggtt
tgtgagaattttattgagtatttttacatcgatattcataaaggaaattg
ggtctgaagttatctttccttgatgaatcttgtgtggtttaggaatcaga
gtaattgtggctcatagaatgatttggatagagtactttctgtttctatt
ttgtggatagtttgaggagtaatgcattagtcttcttgaagtctgaatag
aactctgcactaaccatctggtctggcttttttggttgagaggaactata
atgactgtttc
tacacctgagaccagggtgggggggaagaaagaaagaaagaaacaccata
gttttctcagtgttgtcacttaaactcttggcaacatgcagagaagctca
gacattttaaaatgaatgttgggttggttttgtttttagagttgtttaat
ctaacaaagtttaaaacacaataattatcttgtttgcatgtatctttgtt
ttgtatctgtgatagttgaaagagctcacataaagctttagaagcaagtg
tttataactgttaccaggattggtcaaagctaatgggaactctgttgatt
taagtagaggcttgacatcaatgcattggtccttggcttacaaattgaaa
catcctgtccatcttctgtttgtttgtttgtttgtttgtttgtttgagac
agagtttctttgtatagccctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_105150196_105150624
seq2: B6Ng01-236J09.g_68_496 (reverse)

seq1  CCAGGGCTATACAAAGAAACTCTGTCTCAAACAAACAAACAAACAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTATACAAAGAAACTCTGTCTCAAACAAACAAACAAACAAACAA  50

seq1  ACAAACAGAAGATGGACAGGATGTTTCAATTTGTAAGCCAAGGACCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGAAGATGGACAGGATGTTTCAATTTGTAAGCCAAGGACCAATG  100

seq1  CATTGATGTCAAGCCTCTACTTAAATCAACAGAGTTCCCATTAGCTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGTCAAGCCTCTACTTAAATCAACAGAGTTCCCATTAGCTTTGA  150

seq1  CCAATCCTGGTAACAGTTATAAACACTTGCTTCTAAAGCTTTATGTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCTGGTAACAGTTATAAACACTTGCTTCTAAAGCTTTATGTGAGC  200

seq1  TCTTTCAACTATCACAGATACAAAACAAAGATACATGCAAACAAGATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAACTATCACAGATACAAAACAAAGATACATGCAAACAAGATAAT  250

seq1  TATTGTGTTTTAAACTTTGTTAGATTAAACAACTCTAAAAACAAAACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTTTTAAACTTTGTTAGATTAAACAACTCTAAAAACAAAACCAA  300

seq1  CCCAACATTCATTTTAAAATGTCTGAGCTTCTCTGCATGTTGCCAAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACATTCATTTTAAAATGTCTGAGCTTCTCTGCATGTTGCCAAGAGT  350

seq1  TTAAGTGACAACACTGAGAAAACTATGGTGTTTCTTTCTTTCTTTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGACAACACTGAGAAAACTATGGTGTTTCTTTCTTTCTTTCTTCC  400

seq1  CCCCCACCCTGGTCTCAGGTGTAGAATTC  429
      |||||||||||||||||||||||||||||
seq2  CCCCCACCCTGGTCTCAGGTGTAGAATTC  429