BAC Information

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BAC

Clone NameB6Ng01-236M03
Chromosome5 (Build37)
Map Location 135,131,534 - 135,251,128
singlet/doubletdoublet
Overlap geneLimk1, Eln
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081
Downstream geneWbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236M03.bB6Ng01-236M03.g
ACCGA047898GA047899
length9821,110
definitionB6Ng01-236M03.b B6Ng01-236M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,250,147 - 135,251,128)(135,131,534 - 135,132,640)
sequence
gaattcagttttaaaaggctacttcattatatatgatataactatatatg
gtatagagcagaggctggccttgaacttcagacttcagcttccagagggc
tggggttacagatgtgtgtcaccacacctcacagctgctcctgttggcag
tattcacaggcccctgctctacttctcccgctgccctgaagctctcacaa
ggttctccgatgccgctctacagcctgagaagctattggtaggtttcagg
aatgtgacgtgttaagatttgtgttactcagaggtggaaaaaacagctca
gtggtaaagaatacttactgctctatcagagaggtgaagttccaattcca
acatccacccgaggcagctcaagatgcttatctgtaattccagggatcca
gtacctccgtctaattttggtgaatacgtggagcgtatgtacatttatgc
tagtataggtattcaccaaattaaaataagtcttttctttaaaaaaaaaa
aggtttggggctggctgtggtggcatatgtctttaaccccaatcactagg
aaggcagaggcaggcagatctctatcctccaggcttttggtaccagattg
ggtctgttgaaacctccagtctcttggaccgagcaacatcaagttctgca
tctctgtggtgtgaggcagtcatggcttgagaactccaaccatatcattt
aggccagtctaataaattcccctttaatgtgtactcgatccatggttctg
ttcttctgaagggtcctgagtaacacagacagcaattggtagaaacagaa
acagacaagtgtaagacttccccatgacacacagcgacaagcagaacctg
gggtggggtggaggagagaaggaagaattgaaaatacttcctcgagtttg
gacacacacacaccacacgagaaataaatggaaaaagaaatttaaattga
ataggtgagctgagcaccgcatccatcccgac
gaattccagtccctttccagagccactgagctacatctcaagccacccca
cattaggcagggtttctctgtgcagtcctggcctagacctcacagggacc
tgtctgcctgtctctcagcactcagtgtgggccaccgcacccagcaccgc
acccagccccacattcgctcttttttttttttttttttccgagacagggt
ttctctgtgtagccctggctgtcctggaactcactatgtagaccaggctg
gtctcaaactcagaaatcgcctgctctgcttcccaagtgctgggattaaa
ggcgtgcgccactacgcccagctcgctctctcttcttgcttgctccgttg
gagctctcagacacacacacgaggatgcaagccccgcgtggggagcacag
aattgattttattgttctgagtttgggttcattcctgtcatgatcactgg
gccgaggcaaggagaccttgcctctttcagtcttggtcccgcgggggtct
gctcaaattctcttccatattcaaagtgcactgggaaagcttcacagttt
aatatgccctagatggtcaactgaagcggagtgaagacatggccctccca
cccccacccacctaaaccaaaacaaaacaacaaaacaaaaccatccccct
aaacccccagcagctgctgctgcagccgttatgaaaaaataatacaaact
cttcttaaaaaatagatcacacagaaagaactcagagggcagatgcaccc
agggagggggcggggctgccccagccatggggagaggcctgggtgctgag
atgaccctggagggctggggtgctggtgggtggctgcctcctttccctct
gcccagcctctgtagtgcgggctgggaccctcctgtcagctggatccaag
gcatcgtcctgccctctcccctgaaggattcctggctcgtcctggaggac
tggtaccttattttcttactaaagtggctttgatcaagaatgaagatggg
acacctagcagatgagggggccactgcctggcacaccggggtggaacctc
ctctctggctttggattcagatccctggtcaatactgatgctactggatt
ccccagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135250147_135251128
seq2: B6Ng01-236M03.b_42_1023 (reverse)

seq1  GTCGGGATGGATGCTGGTGCTCAGCTCACCTATTCATTTTAAATTTCTTT  50
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  GTCGGGATGGATGC-GGTGCTCAGCTCACCTATTCAATTTAAATTTCTTT  49

seq1  TTCCATTTTTTTCTCGTGTGGTGTGTGTGTGTTCAAACTCGAGG-AGTAT  99
      |||||||| ||||||||||||||||||||||| ||||||||||| |||||
seq2  TTCCATTTATTTCTCGTGTGGTGTGTGTGTGTCCAAACTCGAGGAAGTAT  99

seq1  TTTCAATTCTTCCTTCTCTCCTCCACCCCACCCCAGGTTCTGCTTGTCGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTCTTCCTTCTCTCCTCCACCCCACCCCAGGTTCTGCTTGTCGC  149

seq1  TGTGTGTCATGGGGAAGTCTTACACTTGTCTGTTTCTGTTTCTACCAATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCATGGGGAAGTCTTACACTTGTCTGTTTCTGTTTCTACCAATT  199

seq1  GCTGTCTGTGTTACTCAGGACCCTTCAGAAGAACAGAACCATGGATCGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGTGTTACTCAGGACCCTTCAGAAGAACAGAACCATGGATCGAG  249

seq1  TACACATTAAAGGGGAATTTATTAGACTGGCCTAAATGATATGGTTGGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTAAAGGGGAATTTATTAGACTGGCCTAAATGATATGGTTGGAG  299

seq1  TTCTCAAGCCATGACTGCCTCACACCACAGAGATGCAGAACTTGATGTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGCCATGACTGCCTCACACCACAGAGATGCAGAACTTGATGTTG  349

seq1  CTCGGTCCAAGAGACTGGAGGTTTCAACAGACCCAATCTGGTACCAAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTCCAAGAGACTGGAGGTTTCAACAGACCCAATCTGGTACCAAAAG  399

seq1  CCTGGAGGATAGAGATCTGCCTGCCTCTGCCTTCCTAGTGATTGGGGTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGATAGAGATCTGCCTGCCTCTGCCTTCCTAGTGATTGGGGTTA  449

seq1  AAGACATATGCCACCACAGCCAGCCCCAAACCTTTTTTTTTTTAAAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATATGCCACCACAGCCAGCCCCAAACCTTTTTTTTTTTAAAGAAA  499

seq1  AGACTTATTTTAATTTGGTGAATACCTATACTAGCATAAATGTACATACG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTATTTTAATTTGGTGAATACCTATACTAGCATAAATGTACATACG  549

seq1  CTCCACGTATTCACCAAAATTAGACGGAGGTACTGGATCCCTGGAATTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGTATTCACCAAAATTAGACGGAGGTACTGGATCCCTGGAATTAC  599

seq1  AGATAAGCATCTTGAGCTGCCTCGGGTGGATGTTGGAATTGGAACTTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGCATCTTGAGCTGCCTCGGGTGGATGTTGGAATTGGAACTTCAC  649

seq1  CTCTCTGATAGAGCAGTAAGTATTCTTTACCACTGAGCTGTTTTTTCCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGATAGAGCAGTAAGTATTCTTTACCACTGAGCTGTTTTTTCCAC  699

seq1  CTCTGAGTAACACAAATCTTAACACGTCACATTCCTGAAACCTACCAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTAACACAAATCTTAACACGTCACATTCCTGAAACCTACCAATA  749

seq1  GCTTCTCAGGCTGTAGAGCGGCATCGGAGAACCTTGTGAGAGCTTCAGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCAGGCTGTAGAGCGGCATCGGAGAACCTTGTGAGAGCTTCAGGG  799

seq1  CAGCGGGAGAAGTAGAGCAGGGGCCTGTGAATACTGCCAACAGGAGCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGGAGAAGTAGAGCAGGGGCCTGTGAATACTGCCAACAGGAGCAGC  849

seq1  TGTGAGGTGTGGTGACACACATCTGTAACCCCAGCCCTCTGGAAGCTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTGTGGTGACACACATCTGTAACCCCAGCCCTCTGGAAGCTGAA  899

seq1  GTCTGAAGTTCAAGGCCAGCCTCTGCTCTATACCATATATAGTTATATCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGTTCAAGGCCAGCCTCTGCTCTATACCATATATAGTTATATCA  949

seq1  TATATAATGAAGTAGCCTTTTAAAACTGAATTC  982
      |||||||||||||||||||||||||||||||||
seq2  TATATAATGAAGTAGCCTTTTAAAACTGAATTC  982

seq1: chr5_135131534_135132640
seq2: B6Ng01-236M03.g_69_1178

seq1  GAATTCCAGTCCCTTTCCAGAGCCACTGAGCTACATCTCAAGCCACCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCCTTTCCAGAGCCACTGAGCTACATCTCAAGCCACCCCA  50

seq1  CATTAGGCAGGGTTTCTCTGTGCAGTCCTGGCCTAGACCTCACAGGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGCAGGGTTTCTCTGTGCAGTCCTGGCCTAGACCTCACAGGGACC  100

seq1  TGTCTGCCTGTCTCTCAGCACTCAGTGTGGGCCACCGCACCCAGCACCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTGTCTCTCAGCACTCAGTGTGGGCCACCGCACCCAGCACCGC  150

seq1  ACCCAGCCCCACATTCGCTCTTTTTTTTTTTTTTTTTTCCGAGACAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCCCACATTCGCTCTTTTTTTTTTTTTTTTTTCCGAGACAGGGT  200

seq1  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTATGTAGACCAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTATGTAGACCAGGCTG  250

seq1  GTCTCAAACTCAGAAATCGCCTGCTCTGCTTCCCAAGTGCTGGGATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAACTCAGAAATCGCCTGCTCTGCTTCCCAAGTGCTGGGATTAAA  300

seq1  GGCGTGCGCCACTACGCCCAGCTCGCTCTCTCTTCTTGCTTGCTCCGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCGCCACTACGCCCAGCTCGCTCTCTCTTCTTGCTTGCTCCGTTG  350

seq1  GAGCTCTCAGACACACACACGAGGATGCAAGCCCCGCGTGGGGAGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTCAGACACACACACGAGGATGCAAGCCCCGCGTGGGGAGCACAG  400

seq1  AATTGATTTTATTGTTCTGAGTTTGGGTTCATTCCTGTCATGATCACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTTTATTGTTCTGAGTTTGGGTTCATTCCTGTCATGATCACTGG  450

seq1  GCCGAGGCAAGGAGACCTTGCCTCTTTCAGTCTTGGTCCCGCGGGGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGGCAAGGAGACCTTGCCTCTTTCAGTCTTGGTCCCGCGGGGGTCT  500

seq1  GCTCAAATTCTCTTCCATATTCAAAGTGCACTGGGAAAGCTTCACAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATTCTCTTCCATATTCAAAGTGCACTGGGAAAGCTTCACAGTTT  550

seq1  AATATGCCCTAGATGGTCAACTGAAGCGGAGTGAAGACATGGCCCTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCCCTAGATGGTCAACTGAAGCGGAGTGAAGACATGGCCCTCCCA  600

seq1  CCCCCACCCACCTAAACCAAAACAAAACAACAAAACAAAACCATCCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCACCTAAACCAAAACAAAACAACAAAACAAAACCATCCCCCT  650

seq1  AAACCCCCAGCAGCTGCTGCTGCAGCCGTTATGAAAAAATAATACAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCAGCAGCTGCTGCTGCAGCCGTTATGAAAAAATAATACAAACT  700

seq1  CTTCTTAAAAAATAGATCACACAGAAAGAACTCAGAGGGCAGATGCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAAAAAATAGATCACACAGAAAGAACTCAGAGGGCAGATGCACCC  750

seq1  AGGGAGGGGGCGGGGCTGCCCCAGCCATGGGGAGAGGCCTGGGTGCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGGGCGGGGCTGCCCCAGCCATGGGGAGAGGCCTGGGTGCTGAG  800

seq1  ATGACCCTGGAGGGCTGGGGTGCTGGTGGGTGGCTGCCTCC-TTCCCTCT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGACCCTGGAGGGCTGGGGTGCTGGTGGGTGGCTGCCTCCTTTCCCTCT  850

seq1  GCCCAGCCTCTGTAGTGCGGGCT-GGACCCTCCTGTCAGCTGGATCCCAG  898
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  GCCCAGCCTCTGTAGTGCGGGCTGGGACCCTCCTGTCAGCTGGATCCAAG  900

seq1  GCATCGT-CTGCCCTCTCCCCTGAGGGA-TCCTGGCTCGTCCT-GAGGAC  945
      ||||||| |||||||||||||||| ||| |||||||||||||| ||||||
seq2  GCATCGTCCTGCCCTCTCCCCTGAAGGATTCCTGGCTCGTCCTGGAGGAC  950

seq1  TGGTACCT--ATTTCTCACTAAAGTGGCTTTGATCAAGAAATGAGAT-GG  992
      ||||||||   ||||| |||||||||||||||||||||||   |||| ||
seq2  TGGTACCTTATTTTCTTACTAAAGTGGCTTTGATCAAGAATGAAGATGGG  1000

seq1  ACACTAAGCAAGAGTGA-GGGGCCACTGCCTGGCCACA-CGGGGTTGGAC  1040
      ||||  ||| ||| ||| ||||||||||||||| |||| |||||| | ||
seq2  ACACCTAGC-AGA-TGAGGGGGCCACTGCCTGG-CACACCGGGGTGGAAC  1047

seq1  CTCTCTCTCTGCTTTGGGATTCAGATCCCT-GTCAATACCTGATGCTACC  1089
      ||| |||||||  || |||||||||||||| ||||||| ||||||||| |
seq2  CTC-CTCTCTGGCTTTGGATTCAGATCCCTGGTCAATA-CTGATGCTA-C  1094

seq1  TGGATTTCCCCAAGGGGA  1107
      ||||||  ||| ||||||
seq2  TGGATT--CCCCAGGGGA  1110