BAC Information

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BAC

Clone NameB6Ng01-237B16
Chromosome5 (Build37)
Map Location 3,355,730 - 3,356,343
singlet/doubletsinglet
Overlap geneCdk6
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726
Downstream gene5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237B16.bB6Ng01-237B16.g
ACCGA048154GA048155
length1,144616
definitionB6Ng01-237B16.b B6Ng01-237B16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttaaaaagggacggggtttcgttttctctctctcttgcttc
ttgctctcttgcttcctacaccctggctcctgaagatgtaagaaataaag
ctttgccgcagaagattctggtctgtggtgttcttcctggccggtcgtga
gaacgcgtctaataacactcatcaattcctattatccgtaggtttggtct
tctcattgtgtcctgcattacctggatgttttgagttaggatccttttgc
attttgtattttctttgactgttgtgtcgatgttctctatggaatcttct
gcacctgagattctctcttccatttcttgtattctgttgctgatgctcgc
atctatggttccagatctctttcctagggtttctatctccagcgttgcct
cactttgggttttctttattgtgtctacttccccttttagttctaatatg
gttttgttcatttccatcacctgtttggatgtgttttgctgtttttcttt
aatgatttctacctgtttggctgtgttttcctgcttctctgtaagggcct
gtaactctttagcagtgctctcctgtaattctttaagtgacttatgaaag
tccttcttgatgtcctctatcatcatcatgagaaatgttttttaaatctg
ggtctagattttcggttgtgttggggtgcccaggactaggtggggtggga
gtgctgagttctgatgatggtgagtggtcttgatttctgttagtaggatt
cttacgtttgcctttcgccatctggtaatctctgaagctagctgttttta
gttgtcactgttaagagcttgttcttcaggtgactctgtttagccctcta
taagcagacctgggagggtagcacttctcctttagttttcagtgggcagg
agtattctctgcaggcaagcttctcttttttgcagggcaggtacccagat
atctggtgttcgaaccagactcctggcagaagttgtgttccactcactag
aggtcttagatctcgtgtggaatcctggtgtgggcccttgccgggttgtc
aggcgactcccactggccaagtaagctctggggcttctaagtgaattgga
agggggttttgtgccccagaatctaagcccgggttagaccctgt
gaattctgtctttacagggctgagctgagcgggctgtggagacgggagac
aaaggcatcactgctgctcagaagtacattcccagggagcttccagaaat
gtgctgacttcacaaactcccaacaaagtaccgaaatttccagtatagaa
ttagctattttagggaggtgagaatgtggggagggggaattcccctttaa
aaacagctaggcagcaatagataccttgagtcatttacgctggcgataaa
gcctaaatgagaaactggttgaaagactggttgagacttcactgagaaag
aaaggcctagctttctcacttcccgtctccaccaaaaacacagcacagtg
agtaaacctggggtcaccgcaagctgcggttgagttggtaatgatttgtt
tgcatgcagaatttattcttttaaatcatcagacatgggaaattcctgca
gtgaattaatgtatagttaattatgcctcttaagttttctagttttgttt
cccttaggaaaaaaaatcaattggccaacatccccaagatgatgtcatgc
tgtctctctcgtgttacagttaccagctgttggcgtgtaacacagcacat
tcatagtgttgagacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_3355730_3356343
seq2: B6Ng01-237B16.g_70_685 (reverse)

seq1  GGTCTC-ACACTATGAATGTGCTGTG-TCCACGCCAACAGCTGGTAACTG  48
      |||||| ||||||||||||||||||| | |||||||||||||||||||||
seq2  GGTCTCAACACTATGAATGTGCTGTGTTACACGCCAACAGCTGGTAACTG  50

seq1  TAACACGTGAGAGACAGCATGACATCATCTTGGGGATGTTGGCCAACTGA  98
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  TAACACGAGAGAGACAGCATGACATCATCTTGGGGATGTTGGCCAATTGA  100

seq1  TTTTTTTTCCTAAGGGAAACAAAACTAGAAAACTTAAGAGGCATAATTAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCTAAGGGAAACAAAACTAGAAAACTTAAGAGGCATAATTAA  150

seq1  CTATACATTAATTCACTGCAGGAATTTCCCATGTCTGATGATTTAAAAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATTAATTCACTGCAGGAATTTCCCATGTCTGATGATTTAAAAGA  200

seq1  ATAAATTCTGCATGCAAACAAATCATTACCAACTCAACCGCAGCTTGCGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCTGCATGCAAACAAATCATTACCAACTCAACCGCAGCTTGCGG  250

seq1  TGACCCCAGGTTTACTCACTGTGCTGTGTTTTTGGTGGAGACGGGAAGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCAGGTTTACTCACTGTGCTGTGTTTTTGGTGGAGACGGGAAGTG  300

seq1  AGAAAGCTAGGCCTTTCTTTCTCAGTGAAGTCTCAACCAGTCTTTCAACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTAGGCCTTTCTTTCTCAGTGAAGTCTCAACCAGTCTTTCAACC  350

seq1  AGTTTCTCATTTAGGCTTTATCGCCAGCGTAAATGACTCAAGGTATCTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCATTTAGGCTTTATCGCCAGCGTAAATGACTCAAGGTATCTAT  400

seq1  TGCTGCCTAGCTGTTTTTAAAGGGGAATTCCCCCTCCCCACATTCTCACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTAGCTGTTTTTAAAGGGGAATTCCCCCTCCCCACATTCTCACC  450

seq1  TCCCTAAAATAGCTAATTCTATACTGGAAATTTCGGTACTTTGTTGGGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAAATAGCTAATTCTATACTGGAAATTTCGGTACTTTGTTGGGAG  500

seq1  TTTGTGAAGTCAGCACATTTCTGGAAGCTCCCTGGGAATGTACTTCTGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAAGTCAGCACATTTCTGGAAGCTCCCTGGGAATGTACTTCTGAG  550

seq1  CAGCAGTGATGCCTTTGTCTCCCGTCTCCACAGCCCGCTCAGCTCAGCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGATGCCTTTGTCTCCCGTCTCCACAGCCCGCTCAGCTCAGCCC  600

seq1  TGTAAAGACAGAATTC  614
      ||||||||||||||||
seq2  TGTAAAGACAGAATTC  616