BAC Information

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BAC

Clone NameB6Ng01-237J21
Chromosome5 (Build37)
Map Location 76,817,224 - 76,992,315
singlet/doubletdoublet
Overlap geneLOC665065, EG639545, Exoc1
Upstream geneLOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu
Downstream geneCep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237J21.bB6Ng01-237J21.g
ACCGA048524GA048525
length917532
definitionB6Ng01-237J21.b B6Ng01-237J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,817,224 - 76,818,139)(76,991,778 - 76,992,315)
sequence
gaattcttcccaagtgttcaaatatgtaaggccaagacgataaaacgtcc
aaatccctctggggcgttgtcatcaaaactttttatttaacatcaatagc
ttctcaacttgcaactttaatgatcaagctttctacctgtgatgaaagaa
tgatgtcaagcttgtaagtctttaggtcagggcagagggaaaaagaacca
tgaaagaacaggatgatcacaaagaaatgaatcagaattgattctgtgct
taaaaggggacaaaatgaaccatttgccgtatttgtaatttcttattggt
tttgattgttttatggctgacctgttcagagttgcttgagaaagattcaa
tctattattaaatacatttctgctattatgtactttgtaacatcctgcct
agagatgaccaatgagaagttgtttatagatagtatcagggtttatagct
tctgaccttgggtcatttgggttaaagtccacattggcagtcactgctct
ctctctgtccatattgccttcgtacctacatcatagaacacatatattga
ttgcaatcctatactttatcaagaactttgtgcacaggaagaattgttta
catattattgttctaaaaatcctggctatgactatttctcaaagcagagc
ataagagatagactgaagatacagttggatttagaaacaacggaataaga
ttttggagcagacagaaaggacatgaacaaattttcccacttgtttgaaa
agttatgctgagactaagttccagaattttccttaaaaaaaaaaaaaaaa
aactaacttgaaagcaatctgtatttgtaattcctttacagtttgcattt
gttcttcttttacatggattcttattgtttattttatttatatagtgtgt
gtgtgtgtatgtgcgtg
ctactttacttttctttgagatctttacttcttccatttgtcttatttgg
ttactctaaagtttggcagaaagcaaggagagagaaaaaagccacgcgac
ttagaaaacatctataagcagatgcacacatcagtgcccagggcattaca
gatgctgtcagagctcgcctgaagagggtcctggagagaaccagtcctct
gcagcacaaacgctggtgtattttattcagaaaataaaaggagaaaaatt
aagtttagttaaaaatgattcaaccaagggttttgaacttccggtctgtg
ttccaacaagaagcagtttatatttctatcctttgtgaaaagacagggac
aggcaggtgtgcactaaggctcaggcagagccaaggctgtgggggtggag
gacatccctagtttatttctgttttgtggccttggggctaagttgggaaa
gtataaccacttccaattccaactcatctagaactttgatttagacaaca
aatctctatgggttggggtggggtggggcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_76817224_76818139
seq2: B6Ng01-237J21.b_46_962

seq1  GAATTCTTCCCAAGTGTTCAAATATGTAAGGCCAAGACGATAAAACGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCAAGTGTTCAAATATGTAAGGCCAAGACGATAAAACGTCC  50

seq1  AAATCCCTCTGGGGCGTTGTCATCAAAACTTTTTATTTAACATCAATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCTCTGGGGCGTTGTCATCAAAACTTTTTATTTAACATCAATAGC  100

seq1  TTCTCAACTTGCAACTTTAATGATCAAGCTTTCTACCTGTGATGAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACTTGCAACTTTAATGATCAAGCTTTCTACCTGTGATGAAAGAA  150

seq1  TGATGTCAAGCTTGTAAGTCTTTAGGTCAGGGCAGAGGGAAAAAGAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCAAGCTTGTAAGTCTTTAGGTCAGGGCAGAGGGAAAAAGAACCA  200

seq1  TGAAAGAACAGGATGATCACAAAGAAATGAATCAGAATTGATTCTGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAACAGGATGATCACAAAGAAATGAATCAGAATTGATTCTGTGCT  250

seq1  TAAAAGGGGACAAAATGAACCATTTGCCGTATTTGTAATTTCTTATTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGGACAAAATGAACCATTTGCCGTATTTGTAATTTCTTATTGGT  300

seq1  TTTGATTGTTTTATGGCTGACCTGTTCAGAGTTGCTTGAGAAAGATTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGTTTTATGGCTGACCTGTTCAGAGTTGCTTGAGAAAGATTCAA  350

seq1  TCTATTATTAAATACATTTCTGCTATTATGTACTTTGTAACATCCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATTAAATACATTTCTGCTATTATGTACTTTGTAACATCCTGCCT  400

seq1  AGAGATGACCAATGAGAAGTTGTTTATAGATAGTATCAGGGTTTATAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGACCAATGAGAAGTTGTTTATAGATAGTATCAGGGTTTATAGCT  450

seq1  TCTGACCTTGGGTCATTTGGGTTAAAGTCCACATTGGCAGTCACTGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTTGGGTCATTTGGGTTAAAGTCCACATTGGCAGTCACTGCTCT  500

seq1  CTCTCTGTCCATATTGCCTTCGTACCTACATCATAGAACACATATATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCCATATTGCCTTCGTACCTACATCATAGAACACATATATTGA  550

seq1  TTGCAATCCTATACTTTATCAAGAACTTTGTGCACAGGAAGAATTGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATCCTATACTTTATCAAGAACTTTGTGCACAGGAAGAATTGTTTA  600

seq1  CATATTATTGTTCTAAAAATCCTGGCTATGACTATTTCTCAAAGCAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTATTGTTCTAAAAATCCTGGCTATGACTATTTCTCAAAGCAGAGC  650

seq1  ATAAGAGATAGACTGAAGATACAGTTGGATTTAGAAACAACGGAATAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGATAGACTGAAGATACAGTTGGATTTAGAAACAACGGAATAAGA  700

seq1  TTTTGGAGCAGACAGAAAGGACATGAACAAATTTTCCCACTTGTTTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGCAGACAGAAAGGACATGAACAAATTTTCCCACTTGTTTGAAA  750

seq1  AGTTATGCTGAGACTAAGTTCCAGAATTTTCCTT-AAAAAAAAAAAAAAA  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTTATGCTGAGACTAAGTTCCAGAATTTTCCTTAAAAAAAAAAAAAAAA  800

seq1  AACTAACTTGAAAGCAATCTGTATTTGTAATTCCTTTACAGTTTGCATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTTGAAAGCAATCTGTATTTGTAATTCCTTTACAGTTTGCATTT  850

seq1  GTTCTTCTTTTACATGGATTCTTATTGTTTATTTTATTTATATAGTGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTTTTACATGGATTCTTATTGTTTATTTTATTTATATAGTGTGT  900

seq1  GTGTGTGTATGTGCGTG  916
      |||||||||||||||||
seq2  GTGTGTGTATGTGCGTG  917

seq1: chr5_76991778_76992315
seq2: B6Ng01-237J21.g_62_599 (reverse)

seq1  CATGCCCCACCCCACCCCAACCCATAGAGATTTGTTGTCTAAATCAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCCACCCCACCCCAACCCATAGAGATTTGTTGTCTAAATCAAAGT  50

seq1  TCTAGATGAGTTGGAATTGGAAGTGGTTATACTTTCCCAACTTAGCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATGAGTTGGAATTGGAAGTGGTTATACTTTCCCAACTTAGCCCCA  100

seq1  AGGCCACAAAACAGAAATAAACTAGGGATGTCCTCCACCCCCACAGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACAAAACAGAAATAAACTAGGGATGTCCTCCACCCCCACAGCCTT  150

seq1  GGCTCTGCCTGAGCCTTAGTGCACACCTGCCTGTCCCTGTCTTTTCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCCTGAGCCTTAGTGCACACCTGCCTGTCCCTGTCTTTTCACAA  200

seq1  AGGATAGAAATATAAACTGCTTCTTGTTGGAACACAGACCGGAAGTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGAAATATAAACTGCTTCTTGTTGGAACACAGACCGGAAGTTCAA  250

seq1  AACCCTTGGTTGAATCATTTTTAACTAAACTTAATTTTTCTCCTTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTGGTTGAATCATTTTTAACTAAACTTAATTTTTCTCCTTTTATT  300

seq1  TTCTGAATAAAATACACCAGCGTTTGTGCTGCAGAGGACTGGTTCTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATAAAATACACCAGCGTTTGTGCTGCAGAGGACTGGTTCTCTCC  350

seq1  AGGACCCTCTTCAGGCGAGCTCTGACAGCATCTGTAATGCCCTGGGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCTCTTCAGGCGAGCTCTGACAGCATCTGTAATGCCCTGGGCACT  400

seq1  GATGTGTGCATCTGCTTATAGATGTTTTCTAAGTCGCGTGGCTTTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGCATCTGCTTATAGATGTTTTCTAAGTCGCGTGGCTTTTTTCT  450

seq1  CTCTCCTTGCTTTCTGCCAAACTTTAGAGTAACCAAATAAGACAAATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTGCTTTCTGCCAAACTTTAGAGTAACCAAATAAGACAAATGGA  500

seq1  AGAAGTAAAGATCTCAAAGAAAAGTAAAGTAGGAATTC  538
      ||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAAGATCTCAAAGAAAAGTAAAGTAGGAATTC  538