BAC Information

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BAC

Clone NameB6Ng01-237O22
Chromosome5 (Build37)
Map Location 68,263,769 - 68,381,047
singlet/doubletdoublet
Overlap geneEG330097, EG666977
Upstream gene3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458
Downstream geneAY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237O22.bB6Ng01-237O22.g
ACCGA048763GA048764
length3041,154
definitionB6Ng01-237O22.b B6Ng01-237O22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,263,769 - 68,264,072)(68,379,886 - 68,381,047)
sequence
tcttaatttttcataataccatgtctacaataaaaagactaggggacatt
tcccatccattctatgggggcattgctattctgatacaaaagaagacaaa
gatagcagaaaaagttaaactatgggtctatgtgcctcactgatacaaat
ataaaagtatccttaaacaaactaagtgaacataatagatttcctaaaca
tatgaattgcattctacaaccaagtagagtttatttcaatgtgctattgt
aatcagaagcccagttgttgttgttgttgatgatgatgatggtgtgtgtg
tgtg
gaattcaatcctcatgagttttaatggaaactttgattcacaagtgagca
ggctggtaaattcaagatggtcggttaagatttttcagcattccttcctc
attgtaaaacaggaccactctggaataaggaaagcaggtccctgaagttc
cctggggactacaaatgacaaggtatgattatatagctctgactaacttt
gacggaaagaaatcctaattttgatgccctcaggaaccatagatgtgagc
atcagcaacagaatacaagagatggaagagagaatcttagatgcagaaga
ttccatagaaaacatggacacaaaaatcaaagaaaatacaaaatgcaaaa
atattctaactcaaaacatccagaacatccaggacacaatgagaagacta
aacctatagataataggtatagatgagaatgaagattttcaacttaaagg
gccagtaaatttcttcaacaaaattatagaagaaaacttccctaacctaa
agaaagagatgcccatgaacatacaagaagcctacagaactccaaataaa
ctggaccagaaaagaaattcctcctgacacatgataatcagaacaataaa
tgcactgaataaagataaaatattaaaagcagtaaggggaaaaggtcaag
taacatataaaggcaggcctattagaattacaccacacttctcaccagag
actatgaaagccagaagatattggatagatgtaatacagcccctaagaga
acatacatgccctttcggctgccgcagccatcttccagtaactcgccaaa
aggacgaacacaaagggaaagaggagaggcaactggtacatgttctctag
gccttttaggaaacatggtgttgttcctttgggccacatacatgcgaatc
tacaagaagggtgatattgtagacatcaaagggaatgggcactgttcaaa
aaggaatgcccataagtgctaccacggcaaaccggaagagtctacaatgt
caccagcatgcgtgggcatcattgtcaacaagcaggtaagggcaaaatct
gtagaggatcaatgtcagattgagcacatcaggcacctcaagagccagag
aacagcttcctgaccggtgcatggaaatgaccgaagaaataggaagccca
aaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68263769_68264072
seq2: B6Ng01-237O22.b_54_357

seq1  TCTTAATTTTTCATAATACCATGTCTACAATAAAAAGACTAGGGGACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTTTCATAATACCATGTCTACAATAAAAAGACTAGGGGACATT  50

seq1  TCCCATCCATTCTATGGGGGCATTGCTATTCTGATACAAAAGAAGACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCATTCTATGGGGGCATTGCTATTCTGATACAAAAGAAGACAAA  100

seq1  GATAGCAGAAAAAGTTAAACTATGGGTCTATGTGCCTCACTGATACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAGAAAAAGTTAAACTATGGGTCTATGTGCCTCACTGATACAAAT  150

seq1  ATAAAAGTATCCTTAAACAAACTAAGTGAACATAATAGATTTCCTAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTATCCTTAAACAAACTAAGTGAACATAATAGATTTCCTAAACA  200

seq1  TATGAATTGCATTCTACAACCAAGTAGAGTTTATTTCAATGTGCTATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTGCATTCTACAACCAAGTAGAGTTTATTTCAATGTGCTATTGT  250

seq1  AATCAGAAGCCCAGTTGTTGTTGTTGTTGATGATGATGATGGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAAGCCCAGTTGTTGTTGTTGTTGATGATGATGATGGTGTGTGTG  300

seq1  TGTG  304
      ||||
seq2  TGTG  304

seq1: chr5_68379886_68381047
seq2: B6Ng01-237O22.g_66_1219 (reverse)

seq1  TCTTT-GGCTTCCTATTTCTTCTGGTCATTCTCCTTCACCCGCTTCAGGA  49
      ||||| |||||||||||||||| |||||||  | | |||| |  ||||||
seq2  TCTTTGGGCTTCCTATTTCTTC-GGTCATTTCCATGCACCGG--TCAGGA  47

seq1  AGCTG-TCTCT-GCTCTTTGAGTGCTTGATGTGCTCAATCTGAACATTGA  97
      ||||| ||||| ||||||   |||| |||||||||||||||| |||||||
seq2  AGCTGTTCTCTGGCTCTTGAGGTGCCTGATGTGCTCAATCTG-ACATTGA  96

seq1  TCCTCTTGGCCAGAATTTTGCCCTTAACCTGCTTGTTGACAATGATGCCC  147
      ||||||    ||| ||||||||||| ||||||||||||||||||||||||
seq2  TCCTCT---ACAG-ATTTTGCCCTT-ACCTGCTTGTTGACAATGATGCCC  141

seq1  ACGGCATGCTGGGTGACATTGTAGACTCTTCCGGTTTTGCCGTGGTAGCA  197
      || ||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  AC-GCATGCT-GGTGACATTGTAGACTCTTCCGG-TTTGCCGTGGTAGCA  188

seq1  CTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCC-TTGATGTCTACA  246
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTAT-GGGCATTCCTTTTTGAACAGTGCCCATTCCCTTTGATGTCTACA  237

seq1  ATATCACCCTTCTTGTAGATTCGCATGTATGTGG-CCAAAGGAACAACAC  295
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATATCACCCTTCTTGTAGATTCGCATGTATGTGGCCCAAAGGAACAACAC  287

seq1  CATGTTTCCTAAAAGGCCTAGAGAACATGTACCAGTTGCCTCTCCTCTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCCTAAAAGGCCTAGAGAACATGTACCAGTTGCCTCTCCTCTTT  337

seq1  CCCTTTGTGTTCGTCCTTTTGGCGAGTTACTGGAAGATGGCTGCGGCAGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGTGTTCGTCCTTTTGGCGAGTTACTGGAAGATGGCTGCGGCAGC  387

seq1  CGAAAGGGCATGTATGTTCTCTTAGGGGCTGTATTACATCTATCCAATAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGGGCATGTATGTTCTCTTAGGGGCTGTATTACATCTATCCAATAT  437

seq1  CTTCTGGCTTTCATAGTCTCTGGTGAGAAGTGTGGTGTAATTCTAATAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTTTCATAGTCTCTGGTGAGAAGTGTGGTGTAATTCTAATAGG  487

seq1  CCTGCCTTTATATGTTACTTGACCTTTTCCCCTTACTGCTTTTAATATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTTATATGTTACTTGACCTTTTCCCCTTACTGCTTTTAATATTT  537

seq1  TATCTTTATTCAGTGCATTTATTGTTCTGATTATCATGTGTCAGGAGGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTATTCAGTGCATTTATTGTTCTGATTATCATGTGTCAGGAGGAA  587

seq1  TTTCTTTTCTGGTCCAGTTTATTTGGAGTTCTGTAGGCTTCTTGTATGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTGGTCCAGTTTATTTGGAGTTCTGTAGGCTTCTTGTATGTT  637

seq1  CATGGGCATCTCTTTCTTTAGGTTAGGGAAGTTTTCTTCTATAATTTTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCATCTCTTTCTTTAGGTTAGGGAAGTTTTCTTCTATAATTTTGT  687

seq1  TGAAGAAATTTACTGGCCCTTTAAGTTGAAAATCTTCATTCTCATCTATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAATTTACTGGCCCTTTAAGTTGAAAATCTTCATTCTCATCTATA  737

seq1  CCTATTATCTATAGGTTTAGTCTTCTCATTGTGTCCTGGATGTTCTGGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTATCTATAGGTTTAGTCTTCTCATTGTGTCCTGGATGTTCTGGAT  787

seq1  GTTTTGAGTTAGAATATTTTTGCATTTTGTATTTTCTTTGATTTTTGTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGTTAGAATATTTTTGCATTTTGTATTTTCTTTGATTTTTGTGT  837

seq1  CCATGTTTTCTATGGAATCTTCTGCATCTAAGATTCTCTCTTCCATCTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTTCTATGGAATCTTCTGCATCTAAGATTCTCTCTTCCATCTCT  887

seq1  TGTATTCTGTTGCTGATGCTCACATCTATGGTTCCTGAGGGCATCAAAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTGTTGCTGATGCTCACATCTATGGTTCCTGAGGGCATCAAAAT  937

seq1  TAGGATTTCTTTCCGTCAAAGTTAGTCAGAGCTATATAATCATACCTTGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTTCTTTCCGTCAAAGTTAGTCAGAGCTATATAATCATACCTTGT  987

seq1  CATTTGTAGTCCCCAGGGAACTTCAGGGACCTGCTTTCCTTATTCCAGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAGTCCCCAGGGAACTTCAGGGACCTGCTTTCCTTATTCCAGAG  1037

seq1  TGGTCCTGTTTTACAATGAGGAAGGAATGCTGAAAAATCTTAACCGACCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTGTTTTACAATGAGGAAGGAATGCTGAAAAATCTTAACCGACCA  1087

seq1  TCTTGAATTTACCAGCCTGCTCACTTGTGAATCAAAGTTTCCATTAAAAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATTTACCAGCCTGCTCACTTGTGAATCAAAGTTTCCATTAAAAC  1137

seq1  TCATGAGGATTGAATTC  1162
      |||||||||||||||||
seq2  TCATGAGGATTGAATTC  1154