BAC Information

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BAC

Clone NameB6Ng01-237P03
Chromosome5 (Build37)X (Build37)
Map Location 26,426,729 - 26,427,885164,351,263 - 164,351,378
singlet/doubletsingletsinglet
Overlap gene5031410I06Rik
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045
Downstream geneLOC434689, LOC664837, 4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237P03.bB6Ng01-237P03.g
ACCGA048771GA048772
length1,162189
definitionB6Ng01-237P03.b B6Ng01-237P03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,426,729 - 26,427,885)(164,351,263 - 164,351,378)
sequence
gaattcatgacaccatggatgcagtatggcagtgattacatcatcaagtg
tgtgtccatggggtaagtaaaattatcgacacaaaagatcatcaccttgt
atacccctaggtggctagactatgactttattatacagccctggctgcct
ggaacttacaaagatccatctctggatgtgagttctaggtctacagcagg
ggatagaacacctgaataaggaagatggtctcaagagtcactacttgcaa
atcaatttttctgcataagaaatagaatttttaagaaataggttttaaaa
ttcaattaatatagagataaaggcaaaaacaaacaatgaaatacaagaac
aagaacatataacttctaaataacataacaataactcaaagaacaaaaat
gaaaaattcaaccaaaactctaaaggaaaattattgttcagcagcatttt
tttgcacttttagcagcacagccctccaggctgctgctcctcttggacac
ttggtagcagtgcagctgcctcagttttctaccaagagtcgttgtctgaa
gagaaaagggaacaacgccctgaatcagccatggcttcctcgttagggcc
tattcccactcaggacatgtgctataagaagattcatctgaggaagattc
atccgaggaagatgatgggtgctggggatggtgctcagcaggagcctcct
ggcatggcaactcattctgcaagatgctgtcttcttcagctgtggccaat
cccagctctcttgcagcttctgagacctgggagaggaaggcagttactaa
gacacaggaatggtggggatgggcatggccgctctcaggctgcattctcc
cacttcctcaactttacttgacagtcaacattaatattttaactgaaatt
acagatttgaaaactgcagacaggcaaagtattcaaaaacagtcacaaaa
catggactgaaaaaggatcaactcaggcttctatcagctccaaaccagaa
catggcaaaggaagagacctcagtggattacaggaggaaggagaaggcca
catgccaccccagaatcaatgataatgagaagcactcatttgacattgta
ctggccttctattccctccaggtgaatggacctagaatgtccatatgacc
ctctttgcctgt

agtgtttctgtggtttgtttggtgactattggacagaaatacttccattc
agcagcacataggacattgatccaagattgcctagtcggccatcactgga
aagagaggcccatcggacacacaaactttatatgccccagtacaggggaa
cgccagggccaaaaagggggagtgggtgggtaggggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_26426729_26427885
seq2: B6Ng01-237P03.b_47_1208

seq1  GAATTCATGACACCATGGATGCAGTATGGCAGTGATTACATCATCAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACACCATGGATGCAGTATGGCAGTGATTACATCATCAAGTG  50

seq1  TGTGTCCATGGGGTAAGTAAAATTATCGACACAAAAGATCATCACCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCATGGGGTAAGTAAAATTATCGACACAAAAGATCATCACCTTGT  100

seq1  ATACCCCTAGGTGGCTAGACTATGACTTTATTATACAGCCCTGGCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCTAGGTGGCTAGACTATGACTTTATTATACAGCCCTGGCTGCCT  150

seq1  GGAACTTACAAAGATCCATCTCTGGATGTGAGTTCTAGGTCTACAGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTACAAAGATCCATCTCTGGATGTGAGTTCTAGGTCTACAGCAGG  200

seq1  GGATAGAACACCTGAATAAGGAAGATGGTCTCAAGAGTCACTACTTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAACACCTGAATAAGGAAGATGGTCTCAAGAGTCACTACTTGCAA  250

seq1  ATCAATTTTTCTGCATAAGAAATAGAATTTTTAAGAAATAGGTTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTTTCTGCATAAGAAATAGAATTTTTAAGAAATAGGTTTTAAAA  300

seq1  TTCAATTAATATAGAGATAAAGGCAAAAACAAACAATGAAATACAAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAATATAGAGATAAAGGCAAAAACAAACAATGAAATACAAGAAC  350

seq1  AAGAACATATAACTTCTAAATAACATAACAATAACTCAAAGAACAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATATAACTTCTAAATAACATAACAATAACTCAAAGAACAAAAAT  400

seq1  GAAAAATTCAACCAAAACTCTAAAGGAAAATTATTGTTCAGCAGCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTCAACCAAAACTCTAAAGGAAAATTATTGTTCAGCAGCATTTT  450

seq1  TTTGCACTTTTAGCAGCACAGCCCTCCAGGCTGCTGCTCCTCTTGGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACTTTTAGCAGCACAGCCCTCCAGGCTGCTGCTCCTCTTGGACAC  500

seq1  TTGGTAGCAGTGCAGCTGCCTCAGTTTTCTACCAAGAGTCGTTGTCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGCAGTGCAGCTGCCTCAGTTTTCTACCAAGAGTCGTTGTCTGAA  550

seq1  GAGAAAAGGGAACAACGCCCTGAATCAGCCATGGCTTCCTCGTTAGGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGGGAACAACGCCCTGAATCAGCCATGGCTTCCTCGTTAGGGCC  600

seq1  TATTCCCACTCAGGACATGTGCTATAAGAAGATTCATCTGAGGAAGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCACTCAGGACATGTGCTATAAGAAGATTCATCTGAGGAAGATTC  650

seq1  ATCCGAGGAAGATGATGGGTGCTGGGGATGGTGCTCAGCAGGAGCCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGAGGAAGATGATGGGTGCTGGGGATGGTGCTCAGCAGGAGCCTCCT  700

seq1  GGCATGGCAACTCATTCTGCAAGATGCTGTCTTCTTCAGCTGTGGCCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGCAACTCATTCTGCAAGATGCTGTCTTCTTCAGCTGTGGCCAAT  750

seq1  CCCAGCTCTCTTGCAGCTTCTGAGACCTGGGAGAGGAAGGCAGTTACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCTCTTGCAGCTTCTGAGACCTGGGAGAGGAAGGCAGTTACTAA  800

seq1  GACACAGGAATGGTGGGGATGGGCATGGCCGCTCTCAGGCTGCATTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGAATGGTGGGGATGGGCATGGCCGCTCTCAGGCTGCATTCTCC  850

seq1  CACTTCCTCAACTTTACTTGACAGTCAACATTAATATTTTAACTGAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTCAACTTTACTTGACAGTCAACATTAATATTTTAACTGAAATT  900

seq1  ACAGATTTGAAAACTGCAGACAGGCAAAGTATTCAAAAACAGTCACAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTGAAAACTGCAGACAGGCAAAGTATTCAAAAACAGTCACAAAA  950

seq1  CATGGACTGAAAAA-GATCAACTCAGGCTTCTATCAGCTCCAAACAAGAA  999
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  CATGGACTGAAAAAGGATCAACTCAGGCTTCTATCAGCTCCAAACCAGAA  1000

seq1  CATGGCAAAGGAAGAGACCTCAGTGGATTACAGGAAGAAAGGAGAAGGCC  1049
      |||||||||||||||||||||||||||||||||| || ||||||||||||
seq2  CATGGCAAAGGAAGAGACCTCAGTGGATTACAGG-AGGAAGGAGAAGGCC  1049

seq1  ACATGCCA-CCCAG-ATCAATGATAATGAGAAGCACTCATTTGACATTTG  1097
      |||||||| ||||| ||||||||||||||||||||||||||||||| |||
seq2  ACATGCCACCCCAGAATCAATGATAATGAGAAGCACTCATTTGACA-TTG  1098

seq1  TACTTGGC-TCTAATCCCTCCAAGGTGAATTGACCTAGAATGT-CATATG  1145
      |||| | | |||| ||||||| |||||||| |||||||||||| ||||||
seq2  TACTGGCCTTCTATTCCCTCC-AGGTGAATGGACCTAGAATGTCCATATG  1147

seq1  AC---CTCTGCCTGT  1157
      ||   || |||||||
seq2  ACCCTCTTTGCCTGT  1162


seq1: chrX_164351263_164351378
seq2: B6Ng01-237P03.g_144_259 (reverse)

seq1  ACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTTC  50
      | |||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  AATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTAC  50

seq1  TGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGG  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGGGCATATAAAGTTTGTGTGTCCGATGGGCCTCTCTTTCCAGTGATGG  100

seq1  CCGACTAGGCCATCTT  116
      |||||||||| |||||
seq2  CCGACTAGGCAATCTT  116


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