BAC Information

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BAC

Clone NameB6Ng01-238B11
Chromosome5 (Build37)
Map Location 79,307,928 - 79,384,515
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238B11.bB6Ng01-238B11.g
ACCGA048876GA048877
length1,1551,083
definitionB6Ng01-238B11.b B6Ng01-238B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,307,928 - 79,309,360)(79,383,422 - 79,384,515)
sequence
gaattcatttcccttgaggacttaccttaagtaggactcattagccctct
gtagtccggtgccccagctgcccatgctgaagacaaaagggtagccagtt
taattaaccacagcctggagcagcataattcattactattttctcctagt
aatctaaatctatatcagcactcacaatgcagggatagatggagccaagc
gatctaataaggaagaaatcctaaaatctaattgctctttagactcttta
atttaaggtaaaattagaggccatgacaagatcacaaaaagttatcaaca
gagtaaagagaagtatatatcttctatatgctgagaaaccgataaagcac
acagctaagctttaagaacacaattattggtgacttactataaaaacaaa
aagaagtatagtcaatgtgctgcgcttaaattatgcactaagcactttgt
caaacgaaaagaatttagtcacttattttgtgattagcgacagcagtttt
taatacaaatccagtaatttgaaatggcttctcaaagattgatttactaa
gtcagatattaagttcctatgtgattcagcctcatatgcagtaaaaaacc
aaagtgataaaagtaatattttataccttacaaacaacattatctctcat
caaataatctttgtaaaatagcaaaacttatgtgtgaaccaatatgcttg
atggtgttattcaggaggcaactatagagaagagtagtcaacgtgggcta
gcaattagaaaggaaatagatgagtagtctcaatataggaaatattatgt
gaagaaacacctggatgtgttcacaaatcttctggtcattatgactgagg
gatggatgtcaagataggaggaaaagaatactgacgccaactgtatcatg
atatgatggggctatgcacttgagattatgccttctattaggtggaacat
tcagtcttctaaattttaacatagactatatttcttacccttcacaaata
atatacaaaaagaagtgtgtgtatgtgtgtgtgtgtttaaatgaaagcat
gccgatataggagatatgcagccttccaggcactaccaaaatttactagc
aggaatatttatttttcagagaaaatatcaattggaatataagcagtctc
aggaa

gaattcctcagaaaaggagaaaaacagattgtaagcgcccaaggggcgag
gaacacaagacagttttctggttgcctttggaacagaatgtagagccctc
agctcctccagactattcctgtgtggctgctgcaatgtttcctgccttaa
tgataatggactgtacctctgaacctgtaagccagacccagttaaatgtt
gtcttttatacaagttactttggtgatggggtgtctttttacaccaatag
agactctaagacagagaggtctatacacatttaagtcaatacacataatt
atcagagaaaagataagtagtaatgtcaatgtcttcacaagaagacattg
ttatatgatagttactgtcctaataaattgtgaaataattaaatttaacg
agggtagagttttgacttgtacaaatatttatctctactctattagtaat
atcatttcgtagcaaatacatatattcatattaataaataaatgttaaca
agtttacctgtataaaaacatgcaaaaattctgttttatgacctgttttt
caaaactgttcatatctttgcttttatctattattgaaaataatcagaag
ttgactttatatctattagccaccaaaactcacaaaccaatcatgattta
cactattgtcaaaaatataagatgaataagtatacctataattttgctcc
tactgcttgcaagtatatttctctatttatggttcagggtttgctgatta
cttacaaggtgtgtgacagcatcctttaagagatataaatcccagatctt
ttgagggcagaacaaaagctacattaaaagcaatcttcaatcaggcaata
ctttttccaattttcaaaagcagtctcaaatatgtcagtattcttgcagt
attctgcattattgaagatgtgtatgcaccaggtataaatataaaaagat
atattttaacaaaattttagaaattttagaactttgtggtcaacttgtta
aatataccaaactacatagttttttttaaaaccattttagttaggaaatt
agtatttgtatttggtagtgatcatttgtagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79307928_79309360
seq2: B6Ng01-238B11.b_47_1201

seq1  GAATTCATTTCCCTTGAGGACTTACCTTAAGTAGGACTCATTAGCCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCCTTGAGGACTTACCTTAAGTAGGACTCATTAGCCCTCT  50

seq1  GTAGTCCGGTGCCCCAGCTGCCCATGCTGAAGACAAAAGGGTAGCCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCGGTGCCCCAGCTGCCCATGCTGAAGACAAAAGGGTAGCCAGTT  100

seq1  TAATTAACCACAGCCTGGAGCAGCATAATTCATTACTATTTTCTCCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACCACAGCCTGGAGCAGCATAATTCATTACTATTTTCTCCTAGT  150

seq1  AATCTAAATCTATATCAGCACTCACAATGCAGGGATAGATGGAGCCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAATCTATATCAGCACTCACAATGCAGGGATAGATGGAGCCAAGC  200

seq1  GATCTAATAAGGAAGAAATCCTAAAATCTAATTGCTCTTTAGACTCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAATAAGGAAGAAATCCTAAAATCTAATTGCTCTTTAGACTCTTTA  250

seq1  ATTTAAGGTAAAATTAGAGGCCATGACAAGATCACAAAAAGTTATCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGTAAAATTAGAGGCCATGACAAGATCACAAAAAGTTATCAACA  300

seq1  GAGTAAAGAGAAGTATATATCTTCTATATGCTGAGAAACCGATAAAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGAGAAGTATATATCTTCTATATGCTGAGAAACCGATAAAGCAC  350

seq1  ACAGCTAAGCTTTAAGAACACAATTATTGGTGACTTACTATAAAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAAGCTTTAAGAACACAATTATTGGTGACTTACTATAAAAACAAA  400

seq1  AAGAAGTATAGTCAATGTGCTGCGCTTAAATTATGCACTAAGCACTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTATAGTCAATGTGCTGCGCTTAAATTATGCACTAAGCACTTTGT  450

seq1  CAAACGAAAAGAATTTAGTCACTTATTTTGTGATTAGCGACAGCAGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGAAAAGAATTTAGTCACTTATTTTGTGATTAGCGACAGCAGTTTT  500

seq1  TAATACAAATCCAGTAATTTGAAATGGCTTCTCAAAGATTGATTTACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAAATCCAGTAATTTGAAATGGCTTCTCAAAGATTGATTTACTAA  550

seq1  GTCAGATATTAAGTTCCTATGTGATTCAGCCTCATATGCAGTAAAAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATATTAAGTTCCTATGTGATTCAGCCTCATATGCAGTAAAAAACC  600

seq1  AAAGTGATAAAAGTAATATTTTATACCTTACAAACAACATTATCTCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATAAAAGTAATATTTTATACCTTACAAACAACATTATCTCTCAT  650

seq1  CAAATAATCTTTGTAAAATAGCAAAACTTATGTGTGAACCAATATGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATCTTTGTAAAATAGCAAAACTTATGTGTGAACCAATATGCTTG  700

seq1  ATGGTGTTATTCAGGAGGCAACTATAGAGAAGAGTAGTCAACGTGGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTTATTCAGGAGGCAACTATAGAGAAGAGTAGTCAACGTGGGCTA  750

seq1  GCAATTAGAAAGGAAATAGATGAGTAGTCTCAATATAGGAAATATTATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAGAAAGGAAATAGATGAGTAGTCTCAATATAGGAAATATTATGT  800

seq1  GAAGAAACACCTGGATGTGTTCACAAATCTTCTGGTCATTATGACTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACACCTGGATGTGTTCACAAATCTTCTGGTCATTATGACTGAGG  850

seq1  GATGGATGTCAAGATAGGAGGAAAAGAATACTGACGCCAACTGTATCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGTCAAGATAGGAGGAAAAGAATACTGACGCCAACTGTATCATG  900

seq1  ATATGAT-GGGCTATGCACTTGAGAATATGCCTTCTA-TAGGTGGAACAT  948
      ||||||| ||||||||||||||||| ||||||||||| ||||||||||||
seq2  ATATGATGGGGCTATGCACTTGAGATTATGCCTTCTATTAGGTGGAACAT  950

seq1  TCAGTCTTTCTAAAATTTTAACATAGACTATATTTCTTTACCTTCACAAA  998
      |||||| |||| ||||||||||||||||||||||||||  ||||||||||
seq2  TCAGTC-TTCT-AAATTTTAACATAGACTATATTTCTTACCCTTCACAAA  998

seq1  TAATAATAACAAAAAGAAGGTGTGTGTATGTGTGTGTGTG-TTAAATGAA  1047
      |||||   |||||||||| ||||||||||||||||||||| |||||||||
seq2  TAATA--TACAAAAAGAA-GTGTGTGTATGTGTGTGTGTGTTTAAATGAA  1045

seq1  AGGCCATGCCGATATTAAGAGGATATGCAGC--TTCAAGCACAACAAAAA  1095
      ||  |||||||||||  ||  ||||||||||  | || |||| ||  |||
seq2  AG--CATGCCGATAT--AGGAGATATGCAGCCTTCCAGGCACTAC-CAAA  1090

seq1  ATTTACTAGCAAGAATATTTATATTTTAAAGAGAAAAAATAATCATATTG  1145
      ||||||||||| |||||||  ||||||  |||||||| || |    ||||
seq2  ATTTACTAGCAGGAATATT--TATTTTTCAGAGAAAATATCA----ATTG  1134

seq1  AGATAATTAAGCAAGTCTCAAGAAAAAATAAATATTTTGCATTTTCTCTC  1195
        |||  ||||| ||||||| |||                          
seq2  GAATA--TAAGC-AGTCTCAGGAA--------------------------  1155

seq1  ATATATTCTTTATAGATTTGTAGTAACATAAATCCATGTATGTATAGATG  1245
                                                        
seq2  --------------------------------------------------  1155

seq1  ACTGGAAGGTAGAAGCAAAACTGTCATGGGAGACAAAGGTAGTTGATAAT  1295
                                                        
seq2  --------------------------------------------------  1155

seq1  CAGGAAAATTGGGTGACAAAGATCAATGAAAGAAGGCATAGGGAGAATAT  1345
                                                        
seq2  --------------------------------------------------  1155

seq1  TCAACATATAATGCATATCTGTGGGCAAGTATTTACGTAATATAGTGAAG  1395
                                                        
seq2  --------------------------------------------------  1155

seq1  GAACCCCCGAAGGGAGACCCTCACTCCAGTCTCAGGAA  1433
                                            
seq2  --------------------------------------  1155


seq1: chr5_79383422_79384515
seq2: B6Ng01-238B11.g_69_1151 (reverse)

seq1  TACTACAAAATAGATCACTACAAAAATTAACAAATACTTATTTTCCCTTA  50
      |||||||||   ||||||||| |||    ||||||||| ||||  ||| |
seq2  TACTACAAA--TGATCACTACCAAA---TACAAATACTAATTT--CCTAA  43

seq1  CTAAAATTGTTTTTAAAAAAAACTATGTAGTTTGGGTATATTTTAACAAG  100
      |||||| || ||||||||||||||||||||||| |||||| |||||||||
seq2  CTAAAA-TGGTTTTAAAAAAAACTATGTAGTTT-GGTATA-TTTAACAAG  90

seq1  TTGACCACAAAATTTCTAAAATTTCTAAAATTTTGTTAAAATATATCTTT  150
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  TTGACCAC-AAAGTTCTAAAATTTCTAAAATTTTGTTAAAATATATCTTT  139

seq1  TTATATTTATTACTTGGTGCATACACATCTTCAATAATGCAGAATACTGC  200
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  TTATATTTA-TACCTGGTGCATACACATCTTCAATAATGCAGAATACTGC  188

seq1  AAGAATACTGACATATTTGAGACTGCTTTTGAAAATTGGAAAAAGTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACTGACATATTTGAGACTGCTTTTGAAAATTGGAAAAAGTATTG  238

seq1  CCTGATTGAAGATTGCTTTTAATGTAGCTTTTGTTCTGCCCTCAAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTGAAGATTGCTTTTAATGTAGCTTTTGTTCTGCCCTCAAAAGAT  288

seq1  CTGGGATTTATATCTCTT-AAGGATGCTGTCACACACCTTGTAAGTAATC  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGGGATTTATATCTCTTAAAGGATGCTGTCACACACCTTGTAAGTAATC  338

seq1  AGCAAACCCTGAACCATAAATAGAGAAATATACTTGCAAGCAGTAGGAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACCCTGAACCATAAATAGAGAAATATACTTGCAAGCAGTAGGAGC  388

seq1  AAAATTATAGGTATACTTATTCATCTTATATTTTTGACAATAGTGTAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAGGTATACTTATTCATCTTATATTTTTGACAATAGTGTAAAT  438

seq1  CATGATTGGTTTGTGAGTTTTGGTGGCTAATAGATATAAAGTCAACTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTGGTTTGTGAGTTTTGGTGGCTAATAGATATAAAGTCAACTTCT  488

seq1  GATTATTTTCAATAATAGATAAAAGCAAAGATATGAACAGTTTTGAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTCAATAATAGATAAAAGCAAAGATATGAACAGTTTTGAAAAA  538

seq1  CAGGTCATAAAACAGAATTTTTGCATGTTTTTATACAGGTAAACTTGTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCATAAAACAGAATTTTTGCATGTTTTTATACAGGTAAACTTGTTA  588

seq1  ACATTTATTTATTAATATGAATATATGTATTTGCTACGAAATGATATTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATTTATTAATATGAATATATGTATTTGCTACGAAATGATATTAC  638

seq1  TAATAGAGTAGAGATAAATATTTGTACAAGTCAAAACTCTACCCTCGTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAGTAGAGATAAATATTTGTACAAGTCAAAACTCTACCCTCGTTA  688

seq1  AATTTAATTATTTCACAATTTATTAGGACAGTAACTATCATATAACAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATTATTTCACAATTTATTAGGACAGTAACTATCATATAACAATG  738

seq1  TCTTCTTGTGAAGACATTGACATTACTACTTATCTTTTCTCTGATAATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGTGAAGACATTGACATTACTACTTATCTTTTCTCTGATAATTA  788

seq1  TGTGTATTGACTTAAATGTGTATAGACCTCTCTGTCTTAGAGTCTCTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTGACTTAAATGTGTATAGACCTCTCTGTCTTAGAGTCTCTATT  838

seq1  GGTGTAAAAAGACACCCCATCACCAAAGTAACTTGTATAAAAGACAACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAAAAGACACCCCATCACCAAAGTAACTTGTATAAAAGACAACAT  888

seq1  TTAACTGGGTCTGGCTTACAGGTTCAGAGGTACAGTCCATTATCATTAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGGGTCTGGCTTACAGGTTCAGAGGTACAGTCCATTATCATTAAG  938

seq1  GCAGGAAACATTGCAGCAGCCACACAGGAATAGTCTGGAGGAGCTGAGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAACATTGCAGCAGCCACACAGGAATAGTCTGGAGGAGCTGAGGG  988

seq1  CTCTACATTCTGTTCCAAAGGCAACCAGAAAACTGTCTTGTGTTCCTCGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATTCTGTTCCAAAGGCAACCAGAAAACTGTCTTGTGTTCCTCGC  1038

seq1  CCCTTGGGCGCTTACAATCTGTTTTTCTCCTTTTCTGAGGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGGCGCTTACAATCTGTTTTTCTCCTTTTCTGAGGAATTC  1083


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