BAC Information

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BAC

Clone NameB6Ng01-238H09
Chromosome5 (Build37)
Map Location 57,630,559 - 57,752,898
singlet/doubletdoublet
Overlap geneLOC666455
Upstream geneLOC100041335, LOC100041349
Downstream geneLOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238H09.bB6Ng01-238H09.g
ACCGA049149GA049150
length1,1501,132
definitionB6Ng01-238H09.b B6Ng01-238H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,630,559 - 57,631,693)(57,751,766 - 57,752,898)
sequence
gaattctttatatatatattggatatttgtcccctatcagatttaggata
ggtaaagatcctttcccaatctgttggtggcctttttgtcttattgacag
tgtcttttgccttacagaagctttgcagtttcatgaggtcccatttgtca
attctctatcttatagcacaagccattgttgttctattcaggaatttttc
ccctgtgcccatatctttgaggcttttctccactttctcctctataagtt
tcagtgtctggttttatgtggagcttcttgatccacttagatttgacctt
agtacgaggagataggaatggatccattcgcattcttctatatgataacc
accagttgtgccagcaccatttgttgaaaatgctgtcttttttccactgg
atggcacctttatttctaacaatgacaacaatctgtatactctgtgtggt
cagtctttcaacaactgcccctcctaaacacatgctaaacacatgcgaac
acatctcattttgtatactagatattttagcagaaattgacatggaaaaa
aactgctaatataggacaataagagaaattaataaaattggccatgtttt
actgctgagatgagattgactaggctgtacttgacctatttattttgatt
ccaatctcattttagtactatttaacttaatattaaaatcatttatgtcc
ttctcatcttttctaactgtgaagcttcttcagggccaatttaattattt
tcatttattttcctatattagcaattgagtcccatatcaatttctggaaa
aatatctagtatatagaatgagatgtatgtttgtgtgtgttttttgttgt
tgttactaaatagggatgccaataacagaagagttaaattggtagatcat
tagtttttatcctttataaaataaaatgattctctacattaaacataata
ataaaaaatcaaaattagaggggggaaattttcactttgcaaattatata
tttcaaaacttaattttaaattattctgtaaattctttagggtttcatta
atacttcattacaatgcataattttatttataaaatcataaatagatatt
ggtcagtagctcaaatttgagaagtgttaccttagtaattatattgtggg

gaattcatagccaccatgcctcaagataaatatgctaaaataaagagtgt
acacagggctgtgccttagagtctgtatattcagataatgataaacttat
cttagggatgaaatttaaggaacaggtcctaaaatttataaccaggataa
ctcatgcttagataaatattttaaaaacatgtaaattaagtaaaaatcat
catgataaaaattatcaaagtttaaacccagaatgatcacaagtaagttg
agttgatggaaacgaaacactaattaccagtgtgctaaaatcatattaaa
tgtcagtcacagagttacttgattttagtttcctctataaatcttctatc
aaaagtattctacttattcctggatctgaattgttattctcctgaaaagc
tttgtatgtcaagggcaggaagtaacaaaattaatccactattttatcac
cataatttttacattcaaatttagtcatccctaccaactaaaatgtttgt
atactgccatttattttcagaagtagggtttctattagtctcacagacag
ttcaataacaagaactagaccagaaagcttgcagcaatcatctctttcag
agcttgaaggaatctaaaaatacaaagaaaaataaggcaaaattcatgat
gtccttgcttttttgacacctgagtagtattccattgtgtaaacgaagca
cattttcttcatctgttcttaagttgagggacattgggttgtttccaatt
ttgggctattatgtacacagttcctatgaacataattgagcacatgtctt
gcagggttgatggaacatattttggatatgtgcccaggaatggaatagct
gggtcttcaggtagaattaattccaattttcaaagaaaccatcaaattga
tttccagagtggttgtacagtttgcttctttaaccagcaatggagtagtt
ttgcctccatgtcctctgtgctgtccctgagtttgatcttaaccattctg
actggtgtggaggtaggatctcagaagtcattttaattgcattttcttat
gacttagtccatggaagtttctttaaatgttcttcagccatgaaaggcca
atctgttcagaattcctctggttagttcggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57630559_57631693
seq2: B6Ng01-238H09.b_44_1193

seq1  GAATTCTTTATATATATATTGGATATTTGTCCCCTATCAGATTTAGGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATATATATTGGATATTTGTCCCCTATCAGATTTAGGATA  50

seq1  GGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAG  100

seq1  TGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCA  150

seq1  ATTCTCTATCTTATAGCACAAGCCATTGTTGTTCTATTCAGGAATTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTATCTTATAGCACAAGCCATTGTTGTTCTATTCAGGAATTTTTC  200

seq1  CCCTGTGCCCATATCTTTGAGGCTTTTCTCCACTTTCTCCTCTATAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCCCATATCTTTGAGGCTTTTCTCCACTTTCTCCTCTATAAGTT  250

seq1  TCAGTGTCTGGTTTTATGTGGAGCTTCTTGATCCACTTAGATTTGACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCTGGTTTTATGTGGAGCTTCTTGATCCACTTAGATTTGACCTT  300

seq1  AGTACGAGGAGATAGGAATGGATCCATTCGCATTCTTCTATATGATAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGAGGAGATAGGAATGGATCCATTCGCATTCTTCTATATGATAACC  350

seq1  ACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGG  400

seq1  ATGGCACCTTTATTTCTAACAATGACAACAATCTGTATACTCTGTGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCTTTATTTCTAACAATGACAACAATCTGTATACTCTGTGTGGT  450

seq1  CAGTCTTTCAACAACTGCCCCTCCTAAACACATGCTAAACACATGCGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTCAACAACTGCCCCTCCTAAACACATGCTAAACACATGCGAAC  500

seq1  ACATCTCATTTTGTATACTAGATATTTTAGCAGAAATTGACATGGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCATTTTGTATACTAGATATTTTAGCAGAAATTGACATGGAAAAA  550

seq1  AACTGCTAATATAGGACAATAAGAGAAATTAATAAAATTGGCCATGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTAATATAGGACAATAAGAGAAATTAATAAAATTGGCCATGTTTT  600

seq1  ACTGCTGAGATGAGATTGACTAGGCTGTACTTGACCTATTTATTTTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAGATGAGATTGACTAGGCTGTACTTGACCTATTTATTTTGATT  650

seq1  CCAATCTCATTTTAGTACTATTTAACTTAATATTAAAATCATTTATGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCATTTTAGTACTATTTAACTTAATATTAAAATCATTTATGTCC  700

seq1  TTCTCATCTTTTCTAACTGTGAAGCTTCTTCAGGGCCAATTTAATTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCTTTTCTAACTGTGAAGCTTCTTCAGGGCCAATTTAATTATTT  750

seq1  TCATTTATTTTCCTATATTAGCAATTGAGTCCCATATCAATTTCTGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTTTCCTATATTAGCAATTGAGTCCCATATCAATTTCTGGAAA  800

seq1  AATATCTAGTATATAGAATGAGATGTATGTTTGTGTGTGTTTTTTGTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTAGTATATAGAATGAGATGTATGTTTGTGTGTGTTTTTTGTTGT  850

seq1  TGTTACTAAATAGGGATGCCAAATAACAGAAGAGTTAAAATTGTAGATCA  900
      |||||||||||||||||||| |||||||||||||||||| | ||||||||
seq2  TGTTACTAAATAGGGATGCC-AATAACAGAAGAGTTAAATTGGTAGATCA  899

seq1  TTAG-TTTTATCC-TTATAAATTAAAATGATTCTCTACA-TAAACATAAT  947
      |||| |||||||| ||||||| ||||||||||||||||| ||||||||||
seq2  TTAGTTTTTATCCTTTATAAAATAAAATGATTCTCTACATTAAACATAAT  949

seq1  AAATAAAAAATCAAAATTAGAGGGGGGAAATTTTCAC-TTGCAAATTAAT  996
       |||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  -AATAAAAAATCAAAATTAGAGGGGGGAAATTTTCACTTTGCAAATT-AT  997

seq1  AATATTCAAAACTTA--TTTAAATTA-TCTGT-AATTCTTTAGGGTTTCA  1042
      |   |||||||||||  ||||||||| ||||| |||||||||||||||||
seq2  ATATTTCAAAACTTAATTTTAAATTATTCTGTAAATTCTTTAGGGTTTCA  1047

seq1  TT-ATACTTTCATACCATGTATAATTTTATTT-TAAAATCAT-AATAGAT  1089
      || ||||||   ||| ||| |||||||||||| ||||||||| |||||||
seq2  TTAATACTTCATTACAATGCATAATTTTATTTATAAAATCATAAATAGAT  1097

seq1  ATT-GTCAGTAGCTC-AATTTGAGAA-TG-TACATTATTA---TTATTGT  1132
      ||| ||||||||||| |||||||||| || ||| ||| ||    ||||||
seq2  ATTGGTCAGTAGCTCAAATTTGAGAAGTGTTACCTTAGTAATTATATTGT  1147

seq1  GGG  1135
      |||
seq2  GGG  1150

seq1: chr5_57751766_57752898
seq2: B6Ng01-238H09.g_66_1197 (reverse)

seq1  TACAGAACTAAACAGA-GAATTCTGAACAGATGTGCCTTTAATGGCTGAG  49
      ||| ||||||| |||| |||||||||||||||  |||||| |||||||| 
seq2  TACCGAACTAACCAGAGGAATTCTGAACAGATTGGCCTTTCATGGCTGAA  50

seq1  AAACATTTTAAGAAATGTTCAATGTACTTAGTCATTAGAAAATGCAAATT  99
       ||||||| ||||||  ||| ||| ||| |||||| ||||||||| ||||
seq2  GAACATTTAAAGAAA-CTTCCATGGACTAAGTCATAAGAAAATGC-AATT  98

seq1  AAAATGAC-TCTGAGATCCTACCT-CACACCAGTCAGAATGGTTAAGATC  147
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  AAAATGACTTCTGAGATCCTACCTCCACACCAGTCAGAATGGTTAAGATC  148

seq1  AAAACCTCAAGGGACAGCACAGAGGACATGGA-GCAAAACTACTCCATTG  196
      |||  ||| ||||||||||||||||||||||| |||||||||||||||||
seq2  AAA--CTC-AGGGACAGCACAGAGGACATGGAGGCAAAACTACTCCATTG  195

seq1  CTGGTTAAAG-AGCAAACTGTTACAACCACTCTGGAAATCAATTTGATGG  245
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  CTGGTTAAAGAAGCAAACTG-TACAACCACTCTGGAAATCAATTTGATGG  244

seq1  TTTCTTTGAAAATTGGAATTAATTCTACCTGAAGACCCAGCTATTCCATT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAAAATTGGAATTAATTCTACCTGAAGACCCAGCTATTCCATT  294

seq1  CCTGGGCACATATCCAAAATATGTTCCATCAACCCTGCAAGACATGTGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCACATATCCAAAATATGTTCCATCAACCCTGCAAGACATGTGCT  344

seq1  CAATTATGTTCATAGGAACTGTGTACATAATAGCCCAAAATTGGAAACAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGTTCATAGGAACTGTGTACATAATAGCCCAAAATTGGAAACAA  394

seq1  CCCAATGTCCCTCAACTTAAGAACAGATGAAGAAAATGTGCTTCGTTTAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGTCCCTCAACTTAAGAACAGATGAAGAAAATGTGCTTCGTTTAC  444

seq1  ACAATGGAATACTACTCAGGTGTCAAAAAAGCAAGGACATCATGAATTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAATACTACTCAGGTGTCAAAAAAGCAAGGACATCATGAATTTT  494

seq1  GCCTTATTTTTCTTTGTATTTTTAGATTCCTTCAAGCTCTGAAAGAGATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATTTTTCTTTGTATTTTTAGATTCCTTCAAGCTCTGAAAGAGATG  544

seq1  ATTGCTGCAAGCTTTCTGGTCTAGTTCTTGTTATTGAACTGTCTGTGAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGCAAGCTTTCTGGTCTAGTTCTTGTTATTGAACTGTCTGTGAGA  594

seq1  CTAATAGAAACCCTACTTCTGAAAATAAATGGCAGTATACAAACATTTTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGAAACCCTACTTCTGAAAATAAATGGCAGTATACAAACATTTTA  644

seq1  GTTGGTAGGGATGACTAAATTTGAATGTAAAAATTATGGTGATAAAATAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAGGGATGACTAAATTTGAATGTAAAAATTATGGTGATAAAATAG  694

seq1  TGGATTAATTTTGTTACTTCCTGCCCTTGACATACAAAGCTTTTCAGGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAATTTTGTTACTTCCTGCCCTTGACATACAAAGCTTTTCAGGAG  744

seq1  AATAACAATTCAGATCCAGGAATAAGTAGAATACTTTTGATAGAAGATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAATTCAGATCCAGGAATAAGTAGAATACTTTTGATAGAAGATTT  794

seq1  ATAGAGGAAACTAAAATCAAGTAACTCTGTGACTGACATTTAATATGATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGAAACTAAAATCAAGTAACTCTGTGACTGACATTTAATATGATT  844

seq1  TTAGCACACTGGTAATTAGTGTTTCGTTTCCATCAACTCAACTTACTTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACACTGGTAATTAGTGTTTCGTTTCCATCAACTCAACTTACTTGT  894

seq1  GATCATTCTGGGTTTAAACTTTGATAATTTTTATCATGATGATTTTTACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTCTGGGTTTAAACTTTGATAATTTTTATCATGATGATTTTTACT  944

seq1  TAATTTACATGTTTTTAAAATATTTATCTAAGCATGAGTTATCCTGGTTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACATGTTTTTAAAATATTTATCTAAGCATGAGTTATCCTGGTTA  994

seq1  TAAATTTTAGGACCTGTTCCTTAAATTTCATCCCTAAGATAAGTTTATCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTAGGACCTGTTCCTTAAATTTCATCCCTAAGATAAGTTTATCA  1044

seq1  TTATCTGAATATACAGACTCTAAGGCACAGCCCTGTGTACACTCTTTATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGAATATACAGACTCTAAGGCACAGCCCTGTGTACACTCTTTATT  1094

seq1  TTAGCATATTTATCTTGAGGCATGGTGGCTATGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATATTTATCTTGAGGCATGGTGGCTATGAATTC  1132