BAC Information

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BAC

Clone NameB6Ng01-238I23
Chromosome5 (Build37)
Map Location 147,191,524 - 147,280,276
singlet/doubletdoublet
Overlap geneWasf3
Upstream geneCyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8
Downstream geneLOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238I23.bB6Ng01-238I23.g
ACCGA049223GA049224
length294766
definitionB6Ng01-238I23.b B6Ng01-238I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,279,983 - 147,280,276)(147,191,524 - 147,192,289)
sequence
caacataataagaaggtaacaaatgacggactgtatcgtcatcttttgaa
atcagcgtggctggctgagccacaagccagtctcttctgaatgcagactg
tgaacctgcatgcatacttacccatccggatggcagccaagaggtcactt
ctcgcatcacttatgggtggctgtgcaggctctgggcgctttgcctcagc
cacagggggaccatgcattggggacgatgatagggaggaggggccaggag
gaccaggtggaggaggtgggggacctgggggtggtggtgctgtg

gaattcagctcctgatgcaaaacagcgtgtaatttgtacgaaagatgaca
tgctactaagttcaggagaatgacaattgtttttctactaacaagtagca
atgacaaaagggaacctaaaccaattactgagcaaatatctaatttataa
agtgtctcaaaaaaagccccggacccactgtcagactgcaagtgaggaca
gctctaaaacttccctgggaacccacccgagagtgtggtcagccaaggag
caacgatggagtgtcccaagagggttaagacacgtcactgtgagatctta
ataggattatgacagaaagctgctcagttatcacagtaatgccggacagc
ttactgtccatggagggcagcgggctccagcccggccacacctttaactg
ctcactcaagatttcatgggacactaacagccattcacatcaccagaatt
ctctagacactccaacacgttggaagctccatatgtcctttcttatatgt
taggaaatgaaggaggaagttctggattttagattatgttgaagtattta
gagctgtggtttggattttaaatgtctccccaaagcccacatgtgaagga
gctgttggaaggctgtgggccctttaagaattgagacctggctttggatc
cctgtcctctgactgggctgcctaggcctgctgcaacttggtatgctaac
taaagttggtggatatccatgggaagcctctgggtttttgaggagaaagg
aaggaggggtgggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_147279983_147280276
seq2: B6Ng01-238I23.b_51_344 (reverse)

seq1  CACAGCACCACCACCCCCAGGTCCCCCACCTCCTCCACCTGGTCCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACCACCACCCCCAGGTCCCCCACCTCCTCCACCTGGTCCTCCTG  50

seq1  GCCCCTCCTCCCTATCATCGTCCCCAATGCATGGTCCCCCTGTGGCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCTCCCTATCATCGTCCCCAATGCATGGTCCCCCTGTGGCTGAG  100

seq1  GCAAAGCGCCCAGAGCCTGCACAGCCACCCATAAGTGATGCGAGAAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCGCCCAGAGCCTGCACAGCCACCCATAAGTGATGCGAGAAGTGA  150

seq1  CCTCTTGGCTGCCATCCGGATGGGTAAGTATGCATGCAGGTTCACAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGCTGCCATCCGGATGGGTAAGTATGCATGCAGGTTCACAGTCT  200

seq1  GCATTCAGAAGAGACTGGCTTGTGGCTCAGCCAGCCACGCTGATTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAGAAGAGACTGGCTTGTGGCTCAGCCAGCCACGCTGATTTCAAA  250

seq1  AGATGACGATACAGTCCGTCATTTGTTACCTTCTTATTATGTTG  294
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACGATACAGTCCGTCATTTGTTACCTTCTTATTATGTTG  294


seq1: chr5_147191524_147192289
seq2: B6Ng01-238I23.g_70_835

seq1  GAATTCAGCTCCTGATGCAAAACAGCGTGTAATTTGTACGAAAGATGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCCTGATGCAAAACAGCGTGTAATTTGTACGAAAGATGACA  50

seq1  TGCTACTAAGTTCAGGAGAATGACAATTGTTTTTCTACTAACAAGTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTAAGTTCAGGAGAATGACAATTGTTTTTCTACTAACAAGTAGCA  100

seq1  ATGACAAAAGGGAACCTAAACCAATTACTGAGCAAATATCTAATTTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAAGGGAACCTAAACCAATTACTGAGCAAATATCTAATTTATAA  150

seq1  AGTGTCTCAAAAAAAGCCCCGGACCCACTGTCAGACTGCAAGTGAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCAAAAAAAGCCCCGGACCCACTGTCAGACTGCAAGTGAGGACA  200

seq1  GCTCTAAAACTTCCCTGGGAACCCACCCGAGAGTGTGGTCAGCCAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAAACTTCCCTGGGAACCCACCCGAGAGTGTGGTCAGCCAAGGAG  250

seq1  CAACGATGGAGTGTCCCAAGAGGGTTAAGACACGTCACTGTGAGATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGATGGAGTGTCCCAAGAGGGTTAAGACACGTCACTGTGAGATCTTA  300

seq1  ATAGGATTATGACAGAAAGCTGCTCAGTTATCACAGTAATGCCGGACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATTATGACAGAAAGCTGCTCAGTTATCACAGTAATGCCGGACAGC  350

seq1  TTACTGTCCATGGAGGGCAGCGGGCTCCAGCCCGGCCACACCTTTAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCCATGGAGGGCAGCGGGCTCCAGCCCGGCCACACCTTTAACTG  400

seq1  CTCACTCAAGATTTCATGGGACACTAACAGCCATTCACATCACCAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAAGATTTCATGGGACACTAACAGCCATTCACATCACCAGAATT  450

seq1  CTCTAGACACTCCAACACGTTGGAAGCTCCATATGTCCTTTCTTATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGACACTCCAACACGTTGGAAGCTCCATATGTCCTTTCTTATATGT  500

seq1  TAGGAAATGAAGGAGGAAGTTCTGGATTTTAGATTATGTTGAAGTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATGAAGGAGGAAGTTCTGGATTTTAGATTATGTTGAAGTATTTA  550

seq1  GAGCTGTGGTTTGGATTTTAAATGTCTCCCCAAAGCCCACATGTGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGGTTTGGATTTTAAATGTCTCCCCAAAGCCCACATGTGAAGGA  600

seq1  GCTGTTGGAAGGCTGTGGGCCCTTTAAGAATTGAGACCTGGCTTTGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGGAAGGCTGTGGGCCCTTTAAGAATTGAGACCTGGCTTTGGATC  650

seq1  CCTGTCCTCTGACTGGGCTGCCTAGGCCTGCTGCAACTTGGTATGCTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTCTGACTGGGCTGCCTAGGCCTGCTGCAACTTGGTATGCTAAC  700

seq1  TAAGGTTGGTGGATATCCATGGGAAGCCTCTGGGTTTTTGAGGAGAAAGG  750
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTGGTGGATATCCATGGGAAGCCTCTGGGTTTTTGAGGAGAAAGG  750

seq1  AAGGAGGGGTGGGTGG  766
      ||||||||||||||||
seq2  AAGGAGGGGTGGGTGG  766


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