BAC Information

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BAC

Clone NameB6Ng01-238K04
Chromosome5 (Build37)
Map Location 49,054,463 - 49,055,593
singlet/doubletsinglet
Overlap geneKcnip4
Upstream geneLOC100040865, LOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659, EG433885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238K04.bB6Ng01-238K04.g
ACCGA049277GA049278
length1,2021,126
definitionB6Ng01-238K04.b B6Ng01-238K04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaatattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgccggacctaaagctttactacagagcaattgtggtaaaaactgca
tggtactggtatagagacagacaagtagaccaatggaaatagaattgaag
acccagaaatgaacccacacaccttatggtcacttgatcttcgacaaggg
agctaaaaccatccagtggaagaaagacagcatttttcaacaatggtgct
ggcacactggtgttatcatgtagaagaatgcgaatcgatccatacttatc
tccttgtactaaggtcaaatctaatggatcaaagacttcacaataaaacc
agaagacactgaacttatagaggagaaaagtggggaaagcctggagaata
ttggcaacaggaaaattcctgaccgacagcattggcctgtgcctgtagat
ccagatgacaattggactatgaacctcaaagatttctggcaaaggactat
ga
gaattctctgaaaagggccttagcaaaattctcaataacaaaccattgca
taacaatgatacaatgtatctaaaattgtagagatcacaggtgggcatga
tcacaattaaatatttcagggtagggacaaggaaaattgaaggggaaaat
aagatgaggtattttataaaaaaaaaaaaaaaacatccaattaacaacac
actgaattactcaaaatgataagtttccaaatggcattttggtttctata
tcacgtgccttagctgtatgcacttactcattctccactcggttctgctc
cccatgcctgccaatcctgccttttcacagagagtttcctttctcctttc
attttgtaaatataaagggagatatccatgaccacaacctatctatatag
tgtacgttctgaattttaaagataatggagaatgagtctctctgtgcctg
gcttatttcagttaatatgatgatcctattttcacgtaaataacatttca
ttatttatagtgagccacattccatttttataatatacactatgtgcttt
ctacctgctcgtatgctcaggtccatttggatctactccatcccttggct
cttgtgaatagtgactcaggagatatggatgtgcaaacctctctgtggtt
ccatctgcatttacatccttagtgacgtgtataatttacatcccaacaag
tgattgatgagagtcccttgtgaagttatttcacggattatattagatct
cagatccaagctctgtttgtctgtctttatttattattgttgtgcattgg
gcgtgtgatgagcatctcacttgcatagtagctttacatttaaagccatt
cttgcggtactaaggcttccacaatttttgaagagacattctgacctgca
ggcagacttatttggaacttgcatgcaccataatgcctgacttactcatc
ttgtaaagtagtggtgtgggccttctcaaacctgtacagttttcattgta
gacttcctgagctagagcagtctagtctttcaaggtattctcggtcaata
tgctgcacacctctcaagtaacatagcacacaactctgcattgctatttg
agattgtggtgagttgttttcgagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49054463_49055593
seq2: B6Ng01-238K04.g_68_1193 (reverse)

seq1  ATCTCAAAAACAACTTCAACAACAAATCTCAAAATAGCAAATGCAGAGTT  50
      ||||| |||||||| ||| ||   |||||| ||||||| |||||||||||
seq2  ATCTCGAAAACAAC-TCACCA--CAATCTC-AAATAGC-AATGCAGAGTT  45

seq1  GTGTGCCTATGGTACTTGAGA-GTGTGCAGCATATGACCCGAG-ATACC-  97
      ||||| ||||| ||||||||| |||||||||||||   ||||| ||||| 
seq2  GTGTG-CTATGTTACTTGAGAGGTGTGCAGCATATTGACCGAGAATACCT  94

seq1  TGGAAGACTTAGACTGCTCTAGCTTCAGGAAGTCTACAATGAAAACTGTA  147
      || ||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TGAAAGAC-TAGACTGCTCTAGC-TCAGGAAGTCTACAATGAAAACTGTA  142

seq1  CAGGTTTGAGAAAGGCCCACACCACTACTTTACAAGATGGAGTAAGTTCA  197
      |||||||||| ||||||||||||||||||||||||||| ||||||| |||
seq2  CAGGTTTGAG-AAGGCCCACACCACTACTTTACAAGAT-GAGTAAG-TCA  189

seq1  GGCATTATGGTGCATGCAAGTTCCAAAT-AGTCTGCCTGCAGGTCAGAAT  246
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCATTATGGTGCATGCAAGTTCCAAATAAGTCTGCCTGCAGGTCAGAAT  239

seq1  GTCTCTTC-AAAATTGTGGAAGCCTTAGTACCGCAAG-ATGGCTTTAAAT  294
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  GTCTCTTCAAAAATTGTGGAAGCCTTAGTACCGCAAGAATGGCTTTAAAT  289

seq1  GTAAAGCTACTATGCAAGTGAGATGCTCATCACACGCCCAATGCACAACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCTACTATGCAAGTGAGATGCTCATCACACGCCCAATGCACAACA  339

seq1  ATAATAAATAAAGACAGACAAACAGAGCTTGGATCTGAGATCTAATATAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATAAAGACAGACAAACAGAGCTTGGATCTGAGATCTAATATAA  389

seq1  TCCGTGAAATAACTTCACAAGGGACTCTCATCAATCACTTGTTGGGATGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGAAATAACTTCACAAGGGACTCTCATCAATCACTTGTTGGGATGT  439

seq1  AAATTATACACGTCACTAAGGATGTAAATGCAGATGGAACCACAGAGAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATACACGTCACTAAGGATGTAAATGCAGATGGAACCACAGAGAGG  489

seq1  TTTGCACATCCATATCTCCTGAGTCACTATTCACAAGAGCCAAGGGATGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACATCCATATCTCCTGAGTCACTATTCACAAGAGCCAAGGGATGG  539

seq1  AGTAGATCCAAATGGACCTGAGCATACGAGCAGGTAGAAAGCACATAGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCCAAATGGACCTGAGCATACGAGCAGGTAGAAAGCACATAGTG  589

seq1  TATATTATAAAAATGGAATGTGGCTCACTATAAATAATGAAATGTTATTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATAAAAATGGAATGTGGCTCACTATAAATAATGAAATGTTATTT  639

seq1  ACGTGAAAATAGGATCATCATATTAACTGAAATAAGCCAGGCACAGAGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAAAATAGGATCATCATATTAACTGAAATAAGCCAGGCACAGAGAG  689

seq1  ACTCATTCTCCATTATCTTTAAAATTCAGAACGTACACTATATAGATAGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCTCCATTATCTTTAAAATTCAGAACGTACACTATATAGATAGG  739

seq1  TTGTGGTCATGGATATCTCCCTTTATATTTACAAAATGAAAGGAGAAAGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTCATGGATATCTCCCTTTATATTTACAAAATGAAAGGAGAAAGG  789

seq1  AAACTCTCTGTGAAAAGGCAGGATTGGCAGGCATGGGGAGCAGAACCGAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCTGTGAAAAGGCAGGATTGGCAGGCATGGGGAGCAGAACCGAG  839

seq1  TGGAGAATGAGTAAGTGCATACAGCTAAGGCACGTGATATAGAAACCAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATGAGTAAGTGCATACAGCTAAGGCACGTGATATAGAAACCAAA  889

seq1  ATGCCATTTGGAAACTTATCATTTTGAGTAATTCAGTGTGTTGTTAATTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTTGGAAACTTATCATTTTGAGTAATTCAGTGTGTTGTTAATTG  939

seq1  GATGTTTTTTTTTTTTTTTTATAAAATACCTCATCTTATTTTCCCCTTCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTTTTTTTTTTTTTATAAAATACCTCATCTTATTTTCCCCTTCA  989

seq1  ATTTTCCTTGTCCCTACCCTGAAATATTTAATTGTGATCATGCCCACCTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTGTCCCTACCCTGAAATATTTAATTGTGATCATGCCCACCTG  1039

seq1  TGATCTCTACAATTTTAGATACATTGTATCATTGTTATGCAATGGTTTGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTACAATTTTAGATACATTGTATCATTGTTATGCAATGGTTTGT  1089

seq1  TATTGAGAATTTTGCTAAGGCCCTTTTCAGAGAATTC  1131
      |||||||||||||||||||||||||||||||||||||
seq2  TATTGAGAATTTTGCTAAGGCCCTTTTCAGAGAATTC  1126