BAC Information

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BAC

Clone NameB6Ng01-238O07
Chromosome5 (Build37)
Map Location 104,492,157 - 104,493,378
singlet/doubletsinglet
Overlap geneNudt9
Upstream geneMapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11
Downstream geneSparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238O07.bB6Ng01-238O07.g
ACCGA049467GA049468
length1,2331,190
definitionB6Ng01-238O07.b B6Ng01-238O07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcttagtgatcattacctgcctaggaaacatgaagttctaggt
agcaatgccagtgccccaggggaccaaggcagagacatcgcttagctcag
agacagcctgggctacataatgagactctgtctcaaaaaattatccaaag
gagacagagagaaagtaattcaaggcaacacatgtgtgtgctttgcctgt
gtaaacatatatgtgtgaatataaatatgtaccttgcatgtatgtatata
aacatatatgtgtgctttatgtgcgcatataaacatttagtattatattt
gacattctttaatttttatttatttttatgtgtatgggtgttttgcctgc
atgtatgtctgtgtgccaggtgctagaagagggcactgggagttgaacct
gggtcctcgggacgagcagccagtgctttaactgcaggaccattgcacct
ctccctcctaaaagtgggcagaatcaaacttttcacctttacggagcagg
ttaaagaaatgacagtgatgtacaatggagtgccacattcactaaacacg
gaggtgactgagcctcacattgtagtctggaactgtaatcccagtgtctg
gcaatctaaggcaggacgactgcccatgagttcatggccagcctgggcta
tagagtgagctcaggacagcctgagctatggtgtcaaagactatctcaaa
acagaaaacaaaaaaacaaagaaagaaagcagaatatgttttcacgtgga
aggtcaggcacggagaagagcatgcggctctagcaccttttatctattca
atgtaccgctcgctacccagcatctggaagaagccgaggcgcaatgttag
ttagaggttgtggtttattgtgtcttccttacatctattctctaagtaag
tttcaattactttacctgtgtaagaacaaccactgcagtgagacaacaaa
gcccttacttagagaataatgtctggcaacaggcgctgagtaccaggctt
ggcaccccagttgttacatcttaacaacactgcagtcccagcacctccac
agctaatggtatgaggctgttacctgggaggaaagccaccagccattcct
gtttttttttatggaatccattatattctaaggcttctttttattccttc
caaccacacttgtatcgaatcatctaaacaaactgtacaaattcacggcg
agtctctcacagaagaaagctgaactgacagac
gaattctctcacctgtggtaatactgaatggcagagaagcacctgaaaaa
atgttcactatccttaatcatcagggaaatgccaatcaaaacaactctga
gactccatctcacaccagtcagaatggctaagatcaaaaattcaggtgac
agcagatgctggcgaggatgtggagaaagaggaacactcctccattgttg
gtgggattgcaagcttgtacaaccactctggaagtcagtctggaggttcc
tcagaaaactggacatagtactactggaggatcccgcaatacctctcctg
ggcatatatccagaagatgttccaactggtaagaaggacacatgctccac
tatgttcatagcagccttatttataatagccagaagctggaaagaaccca
gatgtccctcaacagaggaatggatacagaaaatgtggtacatttacaca
atgaagtactactcagctattaaaaagaatgaatttatgaaattcctagg
caaatggatggacctggagggtatcatcctgagtgaggtaacccaatcac
aaaagaactcacatgatatgtactcactgataagtggatatttgcccaga
aacttagaatacccaagatacaagatacaggttgcaaaacacatgtaact
caagaagaacgaaaaccaaagtatggacactttgccccttcttagaattg
ggaacaaacacccatggaaggagttacagagacaatgtttggagctgaga
cgaaaggatggaccatctagagactgccacacccagggatccatcccata
atcagcctccaaacgctgacaccattgcatacgccagcaagattttgctg
aaaggaccctgacatagttgtctcttgtgaggctataccggtgcctgaca
aacacagaagtgggatgctcacagtcaagctatgggatggaacacatggc
ccccaatggagagcagagaaagtaccaaaggagctaaaggggtctgcacc
ctataggtaggacacagtatgaactaccagtaccctggagctcggtgtgt
ctagctgcatatgtagcagaagatgcttagtcgtcatcattgggagagga
agtccctgggtcttacaaaactttaaatgctcagttacaggacgccagcc
aagaattggaatgtgggtgtggttatggggtaaagtgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_104492157_104493378
seq2: B6Ng01-238O07.b_43_1275 (reverse)

seq1  GTCTGTTTTCAGTTCAGCTTTCTTCTTGTGAGAGACGTGGCTGTTGAATA  50
      |||||   ||||||||||||||||| |||||||||| | || | ||||| 
seq2  GTCTG---TCAGTTCAGCTTTCTTC-TGTGAGAGAC-TCGCCG-TGAAT-  43

seq1  TTGAACAGTTTTGTTTTGAGTGA-TCGAT-CA--GGTGGTTGG-AGGAGT  95
      ||| |||| ||||||| || ||| ||||| ||   |||||||| |||| |
seq2  TTGTACAG-TTTGTTTAGA-TGATTCGATACAAGTGTGGTTGGAAGGAAT  91

seq1  AAAAGGAAGCC-TAG-ATATTATTGATTCC--AATAAAAAACAGGA--TG  139
      |||| |||||| ||| |||| || ||||||  || |||||||||||   |
seq2  AAAAAGAAGCCTTAGAATATAATGGATTCCATAAAAAAAAACAGGAATGG  141

seq1  CTGGTGGCTTTCCT--CAGGTAACAGCCTCATACCATAGGCTGTGGAGGT  187
      ||||||||||||||  |||||||||||||||||||||  |||||||||||
seq2  CTGGTGGCTTTCCTCCCAGGTAACAGCCTCATACCATTAGCTGTGGAGGT  191

seq1  GCTGGGGCTGCAGTGTTGTT-AGATGT-ACAACTGGGGTGCC-AGCCTGG  234
      |||||| ||||||||||||| |||||| |||||||||||||| |||||||
seq2  GCTGGGACTGCAGTGTTGTTAAGATGTAACAACTGGGGTGCCAAGCCTGG  241

seq1  TACTCAGCGCCTGTTGCCAGACATTATCTCCTAAGT-AGGGCTTTGTTGT  283
      |||||||||||||||||||||||||||   |||||| |||||||||||||
seq2  TACTCAGCGCCTGTTGCCAGACATTATTCTCTAAGTAAGGGCTTTGTTGT  291

seq1  CTCACTGCAGTGGTTGTTCTTACACAGGTAAAGTAATTGAAACTTACTTA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGCAGTGGTTGTTCTTACACAGGTAAAGTAATTGAAACTTACTTA  341

seq1  GAGAATAGATGTAAGGAAGACACAATAAACCACAACCTCTAACTAACATT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGATGTAAGGAAGACACAATAAACCACAACCTCTAACTAACATT  391

seq1  GCGCCTCGGCTTCTTCCAGATGCTGGGTAGCGAGCGGTACATTGAATAGA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTCGGCTTCTTCCAGATGCTGGGTAGCGAGCGGTACATTGAATAGA  441

seq1  TAAAAGGTGCTAGAGCCGCATGCTCTTCTCCGTGCCTGACCTTCCACGTG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTGCTAGAGCCGCATGCTCTTCTCCGTGCCTGACCTTCCACGTG  491

seq1  AAAACATATTCTGCTTTCTTTCTTTGTTTTTT--GTTTCTGTTTTGAGAT  531
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  AAAACATATTCTGCTTTCTTTCTTTGTTTTTTTGTTTTCTGTTTTGAGAT  541

seq1  AGTC-TTGACACCATAGCTCAGGCTGTCCTGAGCTCACTCTATAGCCCAG  580
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGACACCATAGCTCAGGCTGTCCTGAGCTCACTCTATAGCCCAG  591

seq1  GCTGGCCATGAACTCATGGGCAGTCGTCCTGCCTTAGATTGCCAGACACT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCATGAACTCATGGGCAGTCGTCCTGCCTTAGATTGCCAGACACT  641

seq1  GGGATTACAGTTCCAGACTACAATGTGAGGCTCAGTCACCTCCGTGTTTA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTACAGTTCCAGACTACAATGTGAGGCTCAGTCACCTCCGTGTTTA  691

seq1  GTGAATGTGGCACTCCATTGTACATCACTGTCATTTCTTTAACCTGCTCC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTGGCACTCCATTGTACATCACTGTCATTTCTTTAACCTGCTCC  741

seq1  GTAAAGGTGAAAAGTTTGATTCTGCCCACTTTTAGGAGGGAGAGGTGCAA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGTGAAAAGTTTGATTCTGCCCACTTTTAGGAGGGAGAGGTGCAA  791

seq1  TGGTCCTGCAGTTAAAGCACTGGCTGCTCGTCCCGAGGACCCAGGTTCAA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTGCAGTTAAAGCACTGGCTGCTCGTCCCGAGGACCCAGGTTCAA  841

seq1  CTCCCAGTGCCCTCTTCTAGCACCTGGCACACAGACATACATGCAGGCAA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTGCCCTCTTCTAGCACCTGGCACACAGACATACATGCAGGCAA  891

seq1  AACACCCATACACATAAAAATAAATAAAAATTAAAGAATGTCAAATATAA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCATACACATAAAAATAAATAAAAATTAAAGAATGTCAAATATAA  941

seq1  TACTAAATGTTTATATGCGCACATAAAGCACACATATATGTTTATATACA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATGTTTATATGCGCACATAAAGCACACATATATGTTTATATACA  991

seq1  TACATGCAAGGTACATATTTATATTCACACATATATGTTTACACAGGCAA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCAAGGTACATATTTATATTCACACATATATGTTTACACAGGCAA  1041

seq1  AGCACACACATGTGTTGCCTTGAATTACTTTCTCTCTGTCTCCTTTGGAT  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACACATGTGTTGCCTTGAATTACTTTCTCTCTGTCTCCTTTGGAT  1091

seq1  AATTTTTTGAGACAGAGTCTCATTATGTAGCCCAGGCTGTCTCTGAGCTA  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTGAGACAGAGTCTCATTATGTAGCCCAGGCTGTCTCTGAGCTA  1141

seq1  AGCGATGTCTCTGCCTTGGTCCCCTGGGGCACTGGCATTGCTACCTAGAA  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATGTCTCTGCCTTGGTCCCCTGGGGCACTGGCATTGCTACCTAGAA  1191

seq1  CTTCATGTTTCCTAGGCAGGTAATGATCACTAAGCTGAATTC  1222
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTTTCCTAGGCAGGTAATGATCACTAAGCTGAATTC  1233