BAC Information

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BAC

Clone NameB6Ng01-239B22
Chromosome5 (Build37)
Map Location 57,292,003 - 57,341,326
singlet/doubletdoublet
Overlap geneLOC100041335
Upstream genenone
Downstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239B22.bB6Ng01-239B22.g
ACCGA049634GA049635
length1,1791,185
definitionB6Ng01-239B22.b B6Ng01-239B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,340,142 - 57,341,326)(57,292,003 - 57,293,192)
sequence
gaattcttacaacataatatggttaaagttttgtgctatatacttggaac
tcagggaagaaacatttatattatctaatgggataactatcctctgaatc
ttctagtatatcttaagatggatttgcattcatgaatggtgggcctacct
tgataagagtgttcctttatgcagatggattaactatcaaaccaaatagt
tgatgttgttgaccagaaggaaagttttctcttaatgggtctttactgct
actgtaattaaatggcatgctgcagcttgtaaatatacttgaggtaatgt
aaactatctatttatctctgtagccccacaaccacatgttctctcccccc
attttgttctttatattttgatctaaacttctctttttaagttcactgac
ctattcacagtctttcctgtcctagaattatactccttgaataattacca
attttacagcaatatttttgttttttgttttcagattattttatgtaaaa
catctgataccataacagcagaagtaaataagctaagtactaaattatct
tttaatgcatctaccatttttctgccttttcctttgtaaacatattttac
tgtcaacatgttgcatgatagttgacaacaaatatcacctcatgagtctt
tctaataacccctgttcacagtagatttttgtagccaatgaatctttgaa
ttctattatatattttccctcatgccatccactgtgttcccagtatccag
ctgtttattgccatgcattctcagtcagagtcaagttctcagcaatggta
tatgtgaggagtctctttcccttcctaacctgctcccttttctctattga
taattttgtccagattagaaaacatctatatagtagtcaaattaatgaaa
gaatgaatttaagagaaaaatgactctagtgatataatagaacatgtctc
tgtggactgtctctattatattcagcttcagtttaagcattccagaacac
ttcaagaaacatgtactcatttgtctgtgaacgtaacgtcgttaactctt
tcatttagaaagaatacctttaaagatatcactctgatgttcagagcaga
tattctcattccacggcactagaatacagaagagaatctggaaattattt
cggaaagatccgagtagactaaagtttga

gaattcctctaccactgagctatatccctggcccatgaaaaattgattag
aaaatgaaaatgaagccaggcagagaggttcatggctgcaatgtaatcag
ttcagagactgaggcaagaaaaacagctgctttctgaccagcatggcctg
aggtagcagtaaagctgagaccattcgtaggagagtggtgacaaagctat
tggagagttagccagagaatgaatgtgtgcctgtaatgagtcaaccaata
aagtaaaaaaattcagagtcatctgtaatttagaatatattttataaaca
gaatttaaaagctgttttcctgtcattgaaaaccaatttctctattatta
cttcattcgttcatttcccatctatctgttattttaattatttttttttc
tacaattttgcaactgttttcctaagattttatatatgtatatatatacc
ctggacttgcttcattctgctcctctaatatattctctgtctaaaacatt
ctagataatgtcttactcctatgaattgtccatgttgctgaagtttcaag
gactgatcagagcagcaatctgaggggaagtaacacaaaatgagtctcaa
cactgttccttaagtatgaaaaagaaaggattttccttttctttgcagtc
ttaaaattgagttaagagttccctgtaggtttacaaatgagcaggtagcc
actagcctctcccaggctctgtttgtggatgggaaagaacactgagagca
tgagatcacttcccacatctctttaactgctgtatttctcttcactagat
taatcattcaaatgaaagaatgagtgagagattctcattttcaatgcttt
taccgtaccacaggaactacaggggaggaccttatatgaatctgagcttt
gagttgcctttagattttctagaaagtacaattaactcatcccataaaag
atatacctgggaagctaagcccaatgcctggcaaacacaggaagtggatg
ctcacagtcagctactggatgggatcacagggccccaatggaggagctag
agaaactacaaggagctgagggtctgcaaccctatagtggaacaacatat
gacctacagtaccccagagcttgggtcctagcttcatttagcagaagagt
gcttagttggccattcaatgggaagaagagaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57340142_57341326
seq2: B6Ng01-239B22.b_43_1221 (reverse)

seq1  TCAAACTTTATGTTCTACTCTGATTTTTTTCCAAATATATTTTCAGA-TC  49
      ||||||||||   ||||||| || | ||| | ||||| |||| |||| ||
seq2  TCAAACTTTA--GTCTACTCGGA-TCTTTCCGAAATA-ATTTCCAGATTC  46

seq1  TCTTCTGTTATTCTAGTG-CGTGATTTGAGGATATCTGCTCTGGAACATC  98
      ||||||| |||||||||| ||||   |||| ||||||||||| |||||| 
seq2  TCTTCTG-TATTCTAGTGCCGTGGAATGAGAATATCTGCTCT-GAACAT-  93

seq1  CAGAGTGATATCTTTAAAGGTATTCTTTCTAAATGAAAGAGTTAACGACG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGATATCTTTAAAGGTATTCTTTCTAAATGAAAGAGTTAACGACG  143

seq1  TTACGTTTCACAGACAAATGAGTACATGTTTCTTGAAGTGTTCTGGAATG  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACG-TTCACAGACAAATGAGTACATGTTTCTTGAAGTGTTCTGGAATG  192

seq1  CTTAACCTGAAGCTGAATATAATAGAGACAGTCCACAGAGACATGTTCTA  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTGAAGCTGAATATAATAGAGACAGTCCACAGAGACATGTTCTA  242

seq1  TTATATCACTAGAGTCATTTTTCTCTTAAATTCATTCTTTCATTAATTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCACTAGAGTCATTTTTCTCTTAAATTCATTCTTTCATTAATTTG  292

seq1  ACTACTATATAGATGTTTTCTAATCTGGACAAAATTATCAATAGAGAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTATATAGATGTTTTCTAATCTGGACAAAATTATCAATAGAGAAAA  342

seq1  GGGAGCAGGTTAGGAAGGGAAAGAGACTCCTCACATATACCATTGCTGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGGTTAGGAAGGGAAAGAGACTCCTCACATATACCATTGCTGAG  392

seq1  AACTTGACTCTGACTGAGAATGCATGGCAATAAACAGCTGGATACTGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGACTCTGACTGAGAATGCATGGCAATAAACAGCTGGATACTGGGA  442

seq1  ACACAGTGGATGGCATGAGGGAAAATATATAATAGAATTCAAAGATTCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGGATGGCATGAGGGAAAATATATAATAGAATTCAAAGATTCAT  492

seq1  TGGCTACAAAAATCTACTGTGAACAGGGGTTATTAGAAAGACTCATGAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACAAAAATCTACTGTGAACAGGGGTTATTAGAAAGACTCATGAGG  542

seq1  TGATATTTGTTGTCAACTATCATGCAACATGTTGACAGTAAAATATGTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTGTTGTCAACTATCATGCAACATGTTGACAGTAAAATATGTTT  592

seq1  ACAAAGGAAAAGGCAGAAAAATGGTAGATGCATTAAAAGATAATTTAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAAAAGGCAGAAAAATGGTAGATGCATTAAAAGATAATTTAGTA  642

seq1  CTTAGCTTATTTACTTCTGCTGTTATGGTATCAGATGTTTTACATAAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTATTTACTTCTGCTGTTATGGTATCAGATGTTTTACATAAAAT  692

seq1  AATCTGAAAACAAAAAACAAAAATATTGCTGTAAAATTGGTAATTATTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAAACAAAAAACAAAAATATTGCTGTAAAATTGGTAATTATTCA  742

seq1  AGGAGTATAATTCTAGGACAGGAAAGACTGTGAATAGGTCAGTGAACTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTATAATTCTAGGACAGGAAAGACTGTGAATAGGTCAGTGAACTTA  792

seq1  AAAAGAGAAGTTTAGATCAAAATATAAAGAACAAAATGGGGGGAGAGAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAGTTTAGATCAAAATATAAAGAACAAAATGGGGGGAGAGAAC  842

seq1  ATGTGGTTGTGGGGCTACAGAGATAAATAGATAGTTTACATTACCTCAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGTGGGGCTACAGAGATAAATAGATAGTTTACATTACCTCAAG  892

seq1  TATATTTACAAGCTGCAGCATGCCATTTAATTACAGTAGCAGTAAAGACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTACAAGCTGCAGCATGCCATTTAATTACAGTAGCAGTAAAGACC  942

seq1  CATTAAGAGAAAACTTTCCTTCTGGTCAACAACATCAACTATTTGGTTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGAGAAAACTTTCCTTCTGGTCAACAACATCAACTATTTGGTTTG  992

seq1  ATAGTTAATCCATCTGCATAAAGGAACACTCTTATCAAGGTAGGCCCACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAATCCATCTGCATAAAGGAACACTCTTATCAAGGTAGGCCCACC  1042

seq1  ATTCATGAATGCAAATCCATCTTAAGATATACTAGAAGATTCAGAGGATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAATGCAAATCCATCTTAAGATATACTAGAAGATTCAGAGGATA  1092

seq1  GTTATCCCATTAGATAATATAAATGTTTCTTCCCTGAGTTCCAAGTATAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCATTAGATAATATAAATGTTTCTTCCCTGAGTTCCAAGTATAT  1142

seq1  AGCACAAAACTTTAACCATATTATGTTGTAAGAATTC  1185
      |||||||||||||||||||||||||||||||||||||
seq2  AGCACAAAACTTTAACCATATTATGTTGTAAGAATTC  1179


seq1: chr5_57292003_57293192
seq2: B6Ng01-239B22.g_67_1251

seq1  GAATTCCTCTACCACTGAGCTATATCCCTGGCCCATGAAAAATTGATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTACCACTGAGCTATATCCCTGGCCCATGAAAAATTGATTAG  50

seq1  AAAATGAAAATGAAGCCAGGCAGAGAGGTTCATGGCTGCAATGTAATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAATGAAGCCAGGCAGAGAGGTTCATGGCTGCAATGTAATCAG  100

seq1  TTCAGAGACTGAGGCAAGAAAAACAGCTGCTTTCTGACCAGCATGGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGACTGAGGCAAGAAAAACAGCTGCTTTCTGACCAGCATGGCCTG  150

seq1  AGGTAGCAGTAAAGCTGAGACCATTCGTAGGAGAGTGGTGACAAAGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCAGTAAAGCTGAGACCATTCGTAGGAGAGTGGTGACAAAGCTAT  200

seq1  TGGAGAGTTAGCCAGAGAATGAATGTGTGCCTGTAATGAGTCAACCAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTAGCCAGAGAATGAATGTGTGCCTGTAATGAGTCAACCAATA  250

seq1  AAGTAAAAAAATTCAGAGTCATCTGTAATTTAGAATATATTTTATAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAAAATTCAGAGTCATCTGTAATTTAGAATATATTTTATAAACA  300

seq1  GAATTTAAAAGCTGTTTTCCTGTCATTGAAAACCAATTTCTCTATTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAAAGCTGTTTTCCTGTCATTGAAAACCAATTTCTCTATTATTA  350

seq1  CTTCATTCGTTCATTTCCCATCTATCTGTTATTTTAATTATTTTTTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCGTTCATTTCCCATCTATCTGTTATTTTAATTATTTTTTTTTC  400

seq1  TACAATTTTGCAACTGTTTTCCTAAGATTTTATATATGTATATATATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTTGCAACTGTTTTCCTAAGATTTTATATATGTATATATATACC  450

seq1  CTGGACTTGCTTCATTCTGCTCCTCTAATATATTCTCTGTCTAAAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTGCTTCATTCTGCTCCTCTAATATATTCTCTGTCTAAAACATT  500

seq1  CTAGATAATGTCTTACTCCTATGAATTGTCCATGTTGCTGAAGTTTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAATGTCTTACTCCTATGAATTGTCCATGTTGCTGAAGTTTCAAG  550

seq1  GACTGATCAGAGCAGCAATCTGAGGGGAAGTAACACAAAATGAGTCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATCAGAGCAGCAATCTGAGGGGAAGTAACACAAAATGAGTCTCAA  600

seq1  CACTGTTCCTTAAGTATGAAAAAGAAAGGATTTTCCTTTTCTTTGCAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCCTTAAGTATGAAAAAGAAAGGATTTTCCTTTTCTTTGCAGTC  650

seq1  TTAAAATTGAGTTAAGAGTTCCCTGTAGGTTTACAAATGAGCAGGTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTGAGTTAAGAGTTCCCTGTAGGTTTACAAATGAGCAGGTAGCC  700

seq1  ACTAGCCTCTCCCAGGCTCTGTTTGTGGATGGGAAAGAACACTGAGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCTCTCCCAGGCTCTGTTTGTGGATGGGAAAGAACACTGAGAGCA  750

seq1  TGAGATCACTTCCCACATCTCTTTAACTGCTGTATTTCTCTTCACTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCACTTCCCACATCTCTTTAACTGCTGTATTTCTCTTCACTAGAT  800

seq1  TAATCATTCAAATGAAAGAATGAGTGAGAGATTCTCATTTTCAATGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTCAAATGAAAGAATGAGTGAGAGATTCTCATTTTCAATGCTTT  850

seq1  TACCGTACCACAGGAACTACAGGGGAGGACCTTATATGAATCTGAGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTACCACAGGAACTACAGGGGAGGACCTTATATGAATCTGAGCTTT  900

seq1  GAGTTGCCTTTAGATTTTCTAGAAAGTACAATTAACTCATCCCATAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCCTTTAGATTTTCTAGAAAGTACAATTAACTCATCCCATAAAAG  950

seq1  ATATACCTGGGAAGCTAAG-CCAATGCCTGGCAAACACA-GAAGTGGATG  998
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  ATATACCTGGGAAGCTAAGCCCAATGCCTGGCAAACACAGGAAGTGGATG  1000

seq1  CTCACAGTCAGCTACTGGAT-GGATCACAGGGCCCCCAATGGAGGAGCTA  1047
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  CTCACAGTCAGCTACTGGATGGGATCACAGGG-CCCCAATGGAGGAGCTA  1049

seq1  GAGAAACTACCAAGGAGCTGAAGGGTTCTGCAACCCTATAGGTGGAACAA  1097
      ||||||||| |||||||||||  || |||||||||||||| |||||||||
seq2  GAGAAACTA-CAAGGAGCTGA--GGGTCTGCAACCCTATA-GTGGAACAA  1095

seq1  CAATATGAACTAACCAGTACCCCCAGAGCTTGTGTCTCTAGCTTCATTTT  1147
      | |||||| |||  ||||| |||||||||||| ||| |||||||||  ||
seq2  C-ATATGACCTA--CAGTA-CCCCAGAGCTTGGGTC-CTAGCTTCA--TT  1138

seq1  TAGCAGAAGATGGCCTAGTTGGCCA-TCATTGG---GAAGAGAGGAC  1190
      ||||||||||  || |||||||||| ||| |||   |||||||||||
seq2  TAGCAGAAGAGTGCTTAGTTGGCCATTCAATGGGAAGAAGAGAGGAC  1185


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