BAC Information

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BAC

Clone NameB6Ng01-239C18
Chromosome5 (Build37)
Map Location 19,683,561 - 19,899,054
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239C18.bB6Ng01-239C18.g
ACCGA049668GA049669
length5861,054
definitionB6Ng01-239C18.b B6Ng01-239C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,683,561 - 19,684,146)(19,897,973 - 19,899,054)
sequence
gaattctctgttcttgggctatttgtgagagtcagcaatatgagttataa
agagcatctattagtgctgttttctaaacacaaagacaggtcctgcttag
aagggggatcaacataaccatgagaagaaatgaggagacaaaatttgtag
cagaaactgaaggaaagaacatcggtgactgccccacctggggatccatc
ccatatacagttaccaaacccagacactatattggatgccaacaagtgct
tgttgacaggagcctaatatagctatctcctgagagtctctgccagtgtc
tgacaaatgcagaagtggatgctcatagccatccattggactgagcacag
ggtccccaatggaggagctagagaaagggccaaaggagctgaaaggttgt
gcagccccataggaggaacaacaatatgaaccaaccagtacccccagagc
tcccagggactaaaacattaaccaaagagtacacatggagagactcaaga
ctccagccatgtatgtagcagaggatggccttgtgggacatcagtgagag
gaagaggcccttggtcttgtgaagactctatacctc

gaattccacatcttctacaggtcctagctgaagactgtaagaatatttat
agcagttacttagtgcttatgtgttttggagggcagcctgaagggatgga
tgcctttgaaagtctttctagatagacactgctgttggacattaactctc
atagaaaagtacatacatgtgatgtttaagacaattgtgtttcaaaatgt
gatgagttttgaagttcaaagtttttaaaaaataatttcatacggtatat
ttccacagtgtcactccactctgcccaagttcctcccagattcatcccac
ttccctttctgcctttaaaagacaaaaccaaaagccatcaagtccactgg
tgctgtccacgtgctccgggatatttgaccatccactgcagtgtggttaa
cctgctaggtcccagacctgagtcttgacattatgaatttggtgtgaagg
tgtaaaatctctcaggagacacagtgctattgtatacattgccccctact
actaagtagtactggaaaatgtactcacacaggaatcttggaaaatgaca
ggtataaagacactactaagtggttataaagctttgacaatgttaaaaat
aagcaatttcaatgaacacctcaattttatgtttttctttccatatagaa
gtgtcctttggactcacggaaataattcaattaataaacatataatctag
gcagtaatatagcctcttgcctaacacagttctctgacttgcacattgta
taccatgaattgaatcaacatgaaaaaaatgcaaaaatgatgatagacta
tatttctttgcaggtatagttacaatactttttaataccatctaaagtac
tttaaaaataacaccactaaaattcttgaatcagcatcttataacagatg
atcaaatttagttatttaattttcccacataattactaattataattatg
gactcattaaagccataggccaggtaagaggatccctttttttttttttt
tttttccccgagaacaggtttcttctttgtagcccttggctgtccttgaa
ctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19683561_19684146
seq2: B6Ng01-239C18.b_47_632

seq1  GAATTCTCTGTTCTTGGGCTATTTGTGAGAGTCAGCAATATGAGTTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTCTTGGGCTATTTGTGAGAGTCAGCAATATGAGTTATAA  50

seq1  AGAGCATCTATTAGTGCTGTTTTCTAAACACAAAGACAGGTCCTGCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCTATTAGTGCTGTTTTCTAAACACAAAGACAGGTCCTGCTTAG  100

seq1  AAGGGGGATCAACATAACCATGAGAAGAAATGAGGAGACAAAATTTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGATCAACATAACCATGAGAAGAAATGAGGAGACAAAATTTGTAG  150

seq1  CAGAAACTGAAGGAAAGAACATCGGTGACTGCCCCACCTGGGGATCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTGAAGGAAAGAACATCGGTGACTGCCCCACCTGGGGATCCATC  200

seq1  CCATATACAGTTACCAAACCCAGACACTATATTGGATGCCAACAAGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATACAGTTACCAAACCCAGACACTATATTGGATGCCAACAAGTGCT  250

seq1  TGTTGACAGGAGCCTAATATAGCTATCTCCTGAGAGTCTCTGCCAGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACAGGAGCCTAATATAGCTATCTCCTGAGAGTCTCTGCCAGTGTC  300

seq1  TGACAAATGCAGAAGTGGATGCTCATAGCCATCCATTGGACTGAGCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGCAGAAGTGGATGCTCATAGCCATCCATTGGACTGAGCACAG  350

seq1  GGTCCCCAATGGAGGAGCTAGAGAAAGGGCCAAAGGAGCTGAAAGGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCAATGGAGGAGCTAGAGAAAGGGCCAAAGGAGCTGAAAGGTTGT  400

seq1  GCAGCCCCATAGGAGGAACAACAATATGAACCAACCAGTACCCCCAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCCATAGGAGGAACAACAATATGAACCAACCAGTACCCCCAGAGC  450

seq1  TCCCAGGGACTAAAACATTAACCAAAGAGTACACATGGAGAGACTCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGACTAAAACATTAACCAAAGAGTACACATGGAGAGACTCAAGA  500

seq1  CTCCAGCCATGTATGTAGCAGAGGATGGCCTTGTGGGACATCAGTGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCATGTATGTAGCAGAGGATGGCCTTGTGGGACATCAGTGAGAG  550

seq1  GAAGAGGCCCTTGGTCTTGTGAAGACTCTATACCTC  586
      ||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCCCTTGGTCTTGTGAAGACTCTATACCTC  586


seq1: chr5_19897973_19899054
seq2: B6Ng01-239C18.g_66_1119 (reverse)

seq1  TGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC-AGG  49
                                   ||||||| ||||||||| |||
seq2  -----------------------------TGAGTTCAAGGACAGCCAAGG  21

seq1  GCTACAAAG-AGAAACCCTGTCTCGGGG--AAAAAAAAAAAAAAAAAGGG  96
      ||||||||| |||||||   ||||||||  ||||||||||||||||||||
seq2  GCTACAAAGAAGAAACCTGTTCTCGGGGAAAAAAAAAAAAAAAAAAAGGG  71

seq1  ATCCTCTTACCTGGCCTATGGCTTTAAATGAGTCCATAATTTATAATTAG  146
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  ATCCTCTTACCTGGCCTATGGCTTT-AATGAGTCCATAA-TTATAATTAG  119

seq1  TAATTTATGTGGGAAAATTAAATAACTAAATTTGATCATCTGTTTATAAG  196
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAA-TTATGTGGGAAAATTAAATAACTAAATTTGATCATCTG-TTATAAG  167

seq1  ATGCTGATTCAAGAATTTTAGTGGTGTTATTTTTAAAGTACTTTAGATGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATTCAAGAATTTTAGTGGTGTTATTTTTAAAGTACTTTAGATGG  217

seq1  TATT-AAAAGTATTGTAACTATACCTGCAAAGAAATATAGTCTATCATCA  295
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAAGTATTGTAACTATACCTGCAAAGAAATATAGTCTATCATCA  267

seq1  TTTTTGCATTTTTTTCATGTTGATTCAATTCATGGTATACAATGTGCAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCATTTTTTTCATGTTGATTCAATTCATGGTATACAATGTGCAAG  317

seq1  TCAGAGAACTGTGTTAGGCAAGAGGCTATATTACTGCCTAGATTATATGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAACTGTGTTAGGCAAGAGGCTATATTACTGCCTAGATTATATGT  367

seq1  TTATTAATTGAATTATTTCCGTGAGTCCAAAGGACACTTCTATATGGAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATTGAATTATTTCCGTGAGTCCAAAGGACACTTCTATATGGAAA  417

seq1  GAAAAACATAAAATTGAGGTGTTCATTGAAATTGCTTATTTTTAACATTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACATAAAATTGAGGTGTTCATTGAAATTGCTTATTTTTAACATTG  467

seq1  TCAAAGCTTTATAACCACTTAGTAGTGTCTTTATACCTGTCATTTTCCAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTTTATAACCACTTAGTAGTGTCTTTATACCTGTCATTTTCCAA  517

seq1  GATTCCTGTGTGAGTACATTTTCCAGTACTACTTAGTAGTAGGGGGCAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGTGTGAGTACATTTTCCAGTACTACTTAGTAGTAGGGGGCAAT  567

seq1  GTATACAATAGCACTGTGTCTCCTGAGAGATTTTACACCTTCACACCAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAATAGCACTGTGTCTCCTGAGAGATTTTACACCTTCACACCAAA  617

seq1  TTCATAATGTCAAGACTCAGGTCTGGGACCTAGCAGGTTAACCACACTGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATGTCAAGACTCAGGTCTGGGACCTAGCAGGTTAACCACACTGC  667

seq1  AGTGGATGGTCAAATATCCCGGAGCACGTGGACAGCACCAGTGGACTTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATGGTCAAATATCCCGGAGCACGTGGACAGCACCAGTGGACTTGA  717

seq1  TGGCTTTTGGTTTTGTCTTTTAAAGGCAGAAAGGGAAGTGGGATGAATCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGGTTTTGTCTTTTAAAGGCAGAAAGGGAAGTGGGATGAATCT  767

seq1  GGGAGGAACTTGGGCAGAGTGGAGTGACACTGTGGAAATATACCGTATGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAACTTGGGCAGAGTGGAGTGACACTGTGGAAATATACCGTATGA  817

seq1  AATTATTTTTTAAAAACTTTGAACTTCAAAACTCATCACATTTTGAAACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTTTAAAAACTTTGAACTTCAAAACTCATCACATTTTGAAACA  867

seq1  CAATTGTCTTAAACATCACATGTATGTACTTTTCTATGAGAGTTAATGTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTCTTAAACATCACATGTATGTACTTTTCTATGAGAGTTAATGTC  917

seq1  CAACAGCAGTGTCTATCTAGAAAGACTTTCAAAGGCATCCATCCCTTCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCAGTGTCTATCTAGAAAGACTTTCAAAGGCATCCATCCCTTCAG  967

seq1  GCTGCCCTCCAAAACACATAAGCACTAAGTAACTGCTATAAATATTCTTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTCCAAAACACATAAGCACTAAGTAACTGCTATAAATATTCTTA  1017

seq1  CAGTCTTCAGCTAGGACCTGTAGAAGATGTGGAATTC  1082
      |||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCAGCTAGGACCTGTAGAAGATGTGGAATTC  1054


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