BAC Information

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BAC

Clone NameB6Ng01-239F21
Chromosome5 (Build37)
Map Location 13,498,896 - 13,615,689
singlet/doubletdoublet
Overlap geneSema3a
Upstream geneSema3d, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239F21.bB6Ng01-239F21.g
ACCGA049812GA049813
length1,1871,143
definitionB6Ng01-239F21.b B6Ng01-239F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,498,896 - 13,500,063)(13,614,542 - 13,615,689)
sequence
gaattcagaggaagttttcccaagcagaagctcagagaagccagttggaa
tcagtcagttccgagaggaattatgagccaggccagctgctttgaaccaa
cctgctagaattcagaaagaattagaaagtgtgagcttattcagaagtat
acctctgagatgacaattatagttggtggataaaagttacttttacaggt
cttcaactagtgatgggattttgtgtatactccctgctccgtgctgagtt
tttgtctggacaaacttttgaggtattttatgtgctatcaaaagctctgt
gaactcatatgttcaactaattgtcttcttctgtctataaaacactattt
tcttagtcaggatctagtgactgattactttatcgatacatcagtacatt
cttgcagtggataataatgaatataaagaacaagtttaactacaatattt
ctacatatttttaggtgtagataggcattgaaagctatggcactagtaat
attttaatattacgatagtaccaaaatttatttctactgtcaagccacaa
ttttaaatgtattagatttctttttgagtttggttaatagcaacaattca
taaaatcaaaaaataatgacatcatcaactttgtctataaattttataaa
gtcaagcacctctaaatttttcttagtcatctcttggataatgaactttt
gaataatgtttacaaattcactatatacaaattttctgttaaattaagtc
ttattacttataagtaatctcacatataaatatgacctaagaaaatacac
ctatttttaagtagttttgttttagatagtagtacaaaacatacagttac
agtacaataatgtactgtattaatacaatattacttaaatttcttactgt
tgggtaatgtatgataaattgtgtctcctcttctctataacgtcttaata
atggtaaatttagcacagtcccctctccaccttttcattgctcatcctga
tactgagccttttagtcagctccacagcttaaacaaatcattcccaggcc
tgaccatttaagggattgaagaatcttgttctgtcccctggagtcttaca
acttcaatttctttcctcaactgtttaagaaaacaataaacgccagaaaa
atattggccttcctatggtgactcagcacttgaagga

gaattcaatactatggaagcatttgcattgactagcaatagtagacactg
gtgctttttgctggcagagaaatagaatagttgttgaaagcttggtaaat
agtgtctggtacataaacaatgcacacatggattttatttatgatggttt
ttaataagcctgaactttggatcagctggaggtagtgcaaaaagcagtag
tagaccacccagcaggagctgaaaataaatcaaatacctcaaatatatgg
tacatatatgcgcatatgtacctaatgtaaattatgtttttaaatgttgg
atgcatattttctgaggtataaccatactcagatagtctaaggaaattgc
ctcagatttgtttttgaggctaaggttacctatttacctttaaataattc
ttttattggttattttggtgtttttatttataggaagtatttaaatcact
gtgcttcattctatagaaaaatatacagtagattggcagaaaatactgtt
aagaaattctgatatccattcttacatttttgccaaaattcaggaaattt
aatattgtaaaaaatacacttttgttattctaaaaaataaacagaaattg
ggaattgcagattatgtggagtgtctgctgttgtgctccctttagtgcct
cttcttagaatggaatttataagcgatattaaagtatccgtcttgttgag
ttgctcattttcctcttgtataaattcagcaaaattttaagaaagataat
ttttaatagctgaatgtagcctcccacaagcctgaagcaggctgagccag
accttgaccttgctgccactaaaggagattatctagggtggagccttcct
ccctagatcactctattgttgagccactgttgctgttcctcttcaagata
ctgctccctgctgagaggcctcagagctattctggagactacgccctatg
ccctatcaacccttatcgtgcacgtcatcacctgcagctgggttccaggg
ctcagatgattggccggaatggactttcccccttctttttataagcgtgt
ccgccattaaatttggatctgagcaacttagtctgggtttcatttatttc
tcaacccgctagcttctctcttttcttcagttcagatgtcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13498896_13500063
seq2: B6Ng01-239F21.b_44_1230

seq1  GAATTCAGAGGAAGTTTTCCCAAGCAGAAGCTCAGAGAAGCCAGTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGAAGTTTTCCCAAGCAGAAGCTCAGAGAAGCCAGTTGGAA  50

seq1  TCAGTCAGTTCCGAGAGGAATTATGAGCCAGGCCAGCTGCTTTGAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGTTCCGAGAGGAATTATGAGCCAGGCCAGCTGCTTTGAACCAA  100

seq1  CCTGCTAGAATTCAGAAAGAATTAGAAAGTGTGAGCTTATTCAGAAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAGAATTCAGAAAGAATTAGAAAGTGTGAGCTTATTCAGAAGTAT  150

seq1  ACCTCTGAGATGACAATTATAGTTGGTGGATAAAAGTTACTTTTACAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGATGACAATTATAGTTGGTGGATAAAAGTTACTTTTACAGGT  200

seq1  CTTCAACTAGTGATGGGATTTTGTGTATACTCCCTGCTCCGTGCTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTAGTGATGGGATTTTGTGTATACTCCCTGCTCCGTGCTGAGTT  250

seq1  TTTGTCTGGACAAACTTTTGAGGTATTTTATGTGCTATCAAAAGCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGGACAAACTTTTGAGGTATTTTATGTGCTATCAAAAGCTCTGT  300

seq1  GAACTCATATGTTCAACTAATTGTCTTCTTCTGTCTATAAAACACTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATATGTTCAACTAATTGTCTTCTTCTGTCTATAAAACACTATTT  350

seq1  TCTTAGTCAGGATCTAGTGACTGATTACTTTATCGATACATCAGTACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTCAGGATCTAGTGACTGATTACTTTATCGATACATCAGTACATT  400

seq1  CTTGCAGTGGATAATAATGAATATAAAGAACAAGTTTAACTACAATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGTGGATAATAATGAATATAAAGAACAAGTTTAACTACAATATTT  450

seq1  CTACATATTTTTAGGTGTAGATAGGCATTGAAAGCTATGGCACTAGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATTTTTAGGTGTAGATAGGCATTGAAAGCTATGGCACTAGTAAT  500

seq1  ATTTTAATATTACGATAGTACCAAAATTTATTTCTACTGTCAAGCCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATATTACGATAGTACCAAAATTTATTTCTACTGTCAAGCCACAA  550

seq1  TTTTAAATGTATTAGATTTCTTTTTGAGTTTGGTTAATAGCAACAATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGTATTAGATTTCTTTTTGAGTTTGGTTAATAGCAACAATTCA  600

seq1  TAAAATCAAAAAATAATGACATCATCAACTTTGTCTATAAATTTTATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAAAAAATAATGACATCATCAACTTTGTCTATAAATTTTATAAA  650

seq1  GTCAAGCACCTCTAAATTTTTCTTAGTCATCTCTTGGATAATGAACTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCACCTCTAAATTTTTCTTAGTCATCTCTTGGATAATGAACTTTT  700

seq1  GAATAATGTTTACAAATTCACTATATACAAATTTTCTGTTAAATTAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATGTTTACAAATTCACTATATACAAATTTTCTGTTAAATTAAGTC  750

seq1  TTATTACTTATAAGTAATCTCACATATAAATATGACCTAAGAAAATACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTTATAAGTAATCTCACATATAAATATGACCTAAGAAAATACAC  800

seq1  CTATTTTTAAGTAGTTTTGTTTTAGATAGTAGTACAAAACATACAGTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTAAGTAGTTTTGTTTTAGATAGTAGTACAAAACATACAGTTAC  850

seq1  AGTACAATAATGTACTGTATTAATACAATATTACTTAAATTTCTTACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATAATGTACTGTATTAATACAATATTACTTAAATTTCTTACTGT  900

seq1  TGGGTAATGTATGATAAATTGTGTCTCCTCTTCTCTATAACGTCTTAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAATGTATGATAAATTGTGTCTCCTCTTCTCTATAACGTCTTAATA  950

seq1  ATGGTAAATTTAGCACAGTCCCCTCTCCACC-TTTCATTGCTCATCCTGA  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGGTAAATTTAGCACAGTCCCCTCTCCACCTTTTCATTGCTCATCCTGA  1000

seq1  TACTGAGCCTTTTAGTCAGCT-CACAGCTTAAACAAATCATTCCCAGG-C  1047
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  TACTGAGCCTTTTAGTCAGCTCCACAGCTTAAACAAATCATTCCCAGGCC  1050

seq1  TGACCATTTAAGGGA-TGGAGAATCTTGTTCTGT-CTCTGGAGTC-TAC-  1093
      ||||||||||||||| || ||||||||||||||| | |||||||| ||| 
seq2  TGACCATTTAAGGGATTGAAGAATCTTGTTCTGTCCCCTGGAGTCTTACA  1100

seq1  ACTCCA--TTCTT--CTC-ACTGTTTA--GACACAATAAAGGC---AGAA  1133
      ||| ||  |||||  ||| ||||||||   | |||||||| ||   | ||
seq2  ACTTCAATTTCTTTCCTCAACTGTTTAAGAAAACAATAAACGCCAGAAAA  1150

seq1  ATATTGGC--TTCTATGGGTGACTCAGCAC-TGAAGGA  1168
      ||||||||  | |||| ||||||||||||| |||||||
seq2  ATATTGGCCTTCCTAT-GGTGACTCAGCACTTGAAGGA  1187


seq1: chr5_13614542_13615689
seq2: B6Ng01-239F21.g_65_1207 (reverse)

seq1  GAAGACATCTTGAAACTGAAAGAAAAGAGGGAGCCTAGGCGGGTTGAGAA  50
      ||||||||||   ||||| |||||||||| ||  ||| ||||||||||||
seq2  GAAGACATCT--GAACTG-AAGAAAAGAGAGAAGCTA-GCGGGTTGAGAA  46

seq1  AT-AATGGAACCAAGACTAGTTTGCTCAAGATTCAAAATTTTAATGGCGG  99
      || |||| |||| ||||||  |||||| |||| ||||  |||||||||||
seq2  ATAAATGAAACCCAGACTAAGTTGCTC-AGATCCAAA--TTTAATGGCGG  93

seq1  ACACGCTTTATAAAAGAAGGGGGAAAGTCCATTCCCGCCAATTCATCCTT  149
      ||||||||   |||||||||||||||||||||||| ||||| |||||  |
seq2  ACACGCTTATAAAAAGAAGGGGGAAAGTCCATTCCGGCCAA-TCATC--T  140

seq1  GGAGCCTGGAA-CCAGCTGCAGGTGATGACGTGCACGATA--GGGTGATA  196
      |   ||||||| ||||||||||||||||||||||||||||  || |||||
seq2  GAGCCCTGGAACCCAGCTGCAGGTGATGACGTGCACGATAAGGGTTGATA  190

seq1  GGGCATAGGGCGTAGTCTCCAGAATAGCTCTGAGGCCTCTCAGCAGGGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAGGGCGTAGTCTCCAGAATAGCTCTGAGGCCTCTCAGCAGGGAG  240

seq1  CAGTATCTTGAAGAGGAACAGCAACAGTGGCTCAACAATAGAGTGATCTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTTGAAGAGGAACAGCAACAGTGGCTCAACAATAGAGTGATCTA  290

seq1  GGGAGGAAGGCTCCACCCTAGATAATCTCC-TTAGTGGCAGCAAGGTCAA  345
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGGAGGAAGGCTCCACCCTAGATAATCTCCTTTAGTGGCAGCAAGGTCAA  340

seq1  GGTCTGGCTCAGCCTGCTTCAGGCTTGTGGGAGGCTACATTCAGCTATTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGCTCAGCCTGCTTCAGGCTTGTGGGAGGCTACATTCAGCTATTA  390

seq1  AAAATTATCTTTCTTAAAATTTTGCTGAATTTATACAAGAGGAAAATGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATCTTTCTTAAAATTTTGCTGAATTTATACAAGAGGAAAATGAG  440

seq1  CAACTCAACAAGACGGATACTTTAATATCGCTTATAAATTCCATTCTAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAACAAGACGGATACTTTAATATCGCTTATAAATTCCATTCTAAG  490

seq1  AAGAGGCACTAAAGGGAGCACAACAGCAGACACTCCACATAATCTGCAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCACTAAAGGGAGCACAACAGCAGACACTCCACATAATCTGCAAT  540

seq1  TCCCAATTTCTGTTTATTTTTTAGAATAACAAAAGTGTATTTTTTACAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATTTCTGTTTATTTTTTAGAATAACAAAAGTGTATTTTTTACAAT  590

seq1  ATTAAATTTCCTGAATTTTGGCAAAAATGTAAGAATGGATATCAGAATTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTCCTGAATTTTGGCAAAAATGTAAGAATGGATATCAGAATTT  640

seq1  CTTAACAGTATTTTCTGCCAATCTACTGTATATTTTTCTATAGAATGAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAGTATTTTCTGCCAATCTACTGTATATTTTTCTATAGAATGAAG  690

seq1  CACAGTGATTTAAATACTTCCTATAAATAAAAACACCAAAATAACCAATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGATTTAAATACTTCCTATAAATAAAAACACCAAAATAACCAATA  740

seq1  AAAGAATTATTTAAAGGTAAATAGGTAACCTTAGCCTCAAAAACAAATCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTATTTAAAGGTAAATAGGTAACCTTAGCCTCAAAAACAAATCT  790

seq1  GAGGCAATTTCCTTAGACTATCTGAGTATGGTTATACCTCAGAAAATATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAATTTCCTTAGACTATCTGAGTATGGTTATACCTCAGAAAATATG  840

seq1  CATCCAACATTTAAAAACATAATTTACATTAGGTACATATGCGCATATAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAACATTTAAAAACATAATTTACATTAGGTACATATGCGCATATAT  890

seq1  GTACCATATATTTGAGGTATTTGATTTATTTTCAGCTCCTGCTGGGTGGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATATATTTGAGGTATTTGATTTATTTTCAGCTCCTGCTGGGTGGT  940

seq1  CTACTACTGCTTTTTGCACTACCTCCAGCTGATCCAAAGTTCAGGCTTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTGCTTTTTGCACTACCTCCAGCTGATCCAAAGTTCAGGCTTAT  990

seq1  TAAAAACCATCATAAATAAAATCCATGTGTGCATTGTTTATGTACCAGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCATCATAAATAAAATCCATGTGTGCATTGTTTATGTACCAGAC  1040

seq1  ACTATTTACCAAGCTTTCAACAACTATTCTATTTCTCTGCCAGCAAAAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTACCAAGCTTTCAACAACTATTCTATTTCTCTGCCAGCAAAAAG  1090

seq1  CACCAGTGTCTACTATTGCTAGTCAATGCAAATGCTTCCATAGTATTGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGTCTACTATTGCTAGTCAATGCAAATGCTTCCATAGTATTGAA  1140

seq1  TTC  1148
      |||
seq2  TTC  1143


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