BAC Information

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BAC

Clone NameB6Ng01-239J14
Chromosome5 (Build37)
Map Location 17,892,502 - 18,023,363
singlet/doubletdoublet
Overlap geneLOC668167
Upstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239J14.bB6Ng01-239J14.g
ACCGA049981GA049982
length3411,182
definitionB6Ng01-239J14.b B6Ng01-239J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,892,502 - 17,892,848)(18,022,196 - 18,023,363)
sequence
aaggtcaggatgtctagcaaatttatcttagcttctgctaaactgcgtgt
ttgttcagaatcccctccagataactgcttatcttagcttctgtcaaact
gcttgctaaagcaaagttccacccatcccaccccaagttgcagagcaaga
tgcaagggcatggtttcctgcttcaaaaaccttctcttctggacattaag
ggccacacctacatccccaaagactttctctctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttctttctctctctc
tctctctctctctctctctctctctctctctctctctctct

gaattcttccttatgctgtggaggttgctataagcaaaggtaagcacaaa
gctaagaatctctaaatgaggccataaccgcaggaatcttcctgagctgt
ccacccctaagctaactcaaacagtgtaattggaactgggtaaacttagg
aagagttgacaaactctgactggccaggaaaattaggaatagattcaagg
cccctttttaataatatgcttagaactctctgaaaatatagtttaaagat
aggggatcatatgggataagatctggaaagagtagactcaataaaaagat
agattgactaaaatagcttttccaacttgttttttatagcatagatgatg
aaacaacatagtaaaataagttatacatcagtatttgctcttcataaaag
acctgttcagatatctcctattggtctggcatactttaaaactgcacact
gtgccaggctaaaagcagattgtcatatattgaatgtgtttgcttggtgt
acacagtcttcaaattctttggagttatgggcttgaaaataaaaaaataa
tatctgttctattcctaattgggactgaacttgtaaccctgaacatgtaa
tgaaaaatcaaatatatatccagactcaaactgatataataccaaagtct
ttgataattattagtctctctttgctgtgtgaaatctgtataaataaaga
agcagctgattgcttgtaagtcagagctgctagattcccctgaccaccat
gcctgactcactcctcccctagctgacttcttatctcctctgaggccacc
ctgtcaatgtcttcggctggcccaatatgtattaatcagatatctttatt
aaaattcatgaaatccataaacatggatagaactagaaaaatatcttcct
gagtaaaggcaatacaagcccataaaggtaaaagtatggtgtgtaaatgc
cttatatggtggaatattacctgttaagcatttgggtaaggaagctacaa
tctatataaaccacctgagattagatatagagtaagagttgtggggtgat
agggactaggattggacatattaatgggggacagccaggagaagacaggt
agaaaaggataatgatgtccaggaaaggacagctaaaatcatccttattt
ccaaggtcttatggaaacactctataatatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17892502_17892848
seq2: B6Ng01-239J14.b_41_387

seq1  GAATTCAAGGTCAGGATGTCTAGCAAATTTATCTTAGCTTCTGCTAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCAGGATGTCTAGCAAATTTATCTTAGCTTCTGCTAAACT  50

seq1  GCGTGTTTGTTCAGAATCCCCTCCAGATAACTGCTTATCTTAGCTTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTTTGTTCAGAATCCCCTCCAGATAACTGCTTATCTTAGCTTCTGT  100

seq1  CAAACTGCTTGCTAAAGCAAAGTTCCACCCATCCCACCCCAAGTTGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGCTTGCTAAAGCAAAGTTCCACCCATCCCACCCCAAGTTGCAGA  150

seq1  GCAAGATGCAAGGGCATGGTTTCCTGCTTCAAAAACCTTCTCTTCTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATGCAAGGGCATGGTTTCCTGCTTCAAAAACCTTCTCTTCTGGAC  200

seq1  ATTAAGGGCCACACCTACATCCCCAAAGACTTTCTCTCTTTCTTTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGGCCACACCTACATCCCCAAAGACTTTCTCTCTTTCTTTCTTTC  250

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTC  300

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  347
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  347


seq1: chr5_18022196_18023363
seq2: B6Ng01-239J14.g_65_1246 (reverse)

seq1  CTATATTA-----GGTTTCCATAAGACTTTGGAAATAAAGATGATTTTTA  45
      ||||||||      ||||||||||||| |||||||||| ||||| |||||
seq2  CTATATTATAGAGTGTTTCCATAAGACCTTGGAAATAAGGATGA-TTTTA  49

seq1  GCTGTCCCTTCCTG--CAT--TCTTTCTTTCTTCCCTGTCTTCT-CTTGC  90
      ||||||| ||||||  |||  |  | ||||  | |||||||||| || ||
seq2  GCTGTCCTTTCCTGGACATCATTATCCTTTTCTACCTGTCTTCTCCTGGC  99

seq1  TGTCCCCATTTAATAT-TCCCATTCTAGT-CCTATCA-CCCACAACTTCC  137
      |||||||  ||||||| ||| || ||||| ||||||| |||||||||  |
seq2  TGTCCCCCATTAATATGTCCAATCCTAGTCCCTATCACCCCACAACT--C  147

seq1  TTACTCTATATCTAATCTCA-GTGG-TTATATAGATTGTAGCTTCCTTA-  184
      |||||||||||||||||||| |||| ||||||||||||||||||||||| 
seq2  TTACTCTATATCTAATCTCAGGTGGTTTATATAGATTGTAGCTTCCTTAC  197

seq1  CCAAATGCTTAACAGGTAATATTCCA-CATATAA-GCATTTACACACCAT  232
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  CCAAATGCTTAACAGGTAATATTCCACCATATAAGGCATTTACACACCAT  247

seq1  ACTTTTACCTTTATGGGCTTGTATTGCC-TTACTCAGGAAGATATTTTTC  281
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACTTTTACCTTTATGGGCTTGTATTGCCTTTACTCAGGAAGATATTTTTC  297

seq1  TAGTTCTATCCATGTTTTTATGGATTTCATGAATTTTAATAAAGATATCT  331
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  TAGTTCTATCCATG--TTTATGGATTTCATGAATTTTAATAAAGATATCT  345

seq1  GATTAATACATATTGGGCCAGCCGAAGACATTGACAGGGTGGCCTCAGAG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATACATATTGGGCCAGCCGAAGACATTGACAGGGTGGCCTCAGAG  395

seq1  GAGATAAGAAGTCAGCTAGGGGAGGAGTGAGTCAGGCATGGTGGTCAGGG  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGAAGTCAGCTAGGGGAGGAGTGAGTCAGGCATGGTGGTCAGGG  445

seq1  GAATCTAGCAGCTCTGACTTACAAGCAATCAGCTGCTTCTTTATTTATAC  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAGCAGCTCTGACTTACAAGCAATCAGCTGCTTCTTTATTTATAC  495

seq1  AGATTTCACACAGCAAAGAGAGACTAATAATTATCAAAGACTTTGGTATT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCACACAGCAAAGAGAGACTAATAATTATCAAAGACTTTGGTATT  545

seq1  ATATCAGTTTGAGTCTGGATATATATTTGATTTTTCATTACATGTTCAGG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGTTTGAGTCTGGATATATATTTGATTTTTCATTACATGTTCAGG  595

seq1  GTTACAAGTTCAGTCCCAATTAGGAATAGAACAGATATTATTTTTTTATT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAGTTCAGTCCCAATTAGGAATAGAACAGATATTATTTTTTTATT  645

seq1  TTCAAGCCCATAACTCCAAAGAATTTGAAGACTGTGTACACCAAGCAAAC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCCCATAACTCCAAAGAATTTGAAGACTGTGTACACCAAGCAAAC  695

seq1  ACATTCAATATATGACAATCTGCTTTTAGCCTGGCACAGTGTGCAGTTTT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAATATATGACAATCTGCTTTTAGCCTGGCACAGTGTGCAGTTTT  745

seq1  AAAGTATGCCAGACCAATAGGAGATATCTGAACAGGTCTTTTATGAAGAG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATGCCAGACCAATAGGAGATATCTGAACAGGTCTTTTATGAAGAG  795

seq1  CAAATACTGATGTATAACTTATTTTACTATGTTGTTTCATCATCTATGCT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTGATGTATAACTTATTTTACTATGTTGTTTCATCATCTATGCT  845

seq1  ATAAAAAACAAGTTGGAAAAGCTATTTTAGTCAATCTATCTTTTTATTGA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAACAAGTTGGAAAAGCTATTTTAGTCAATCTATCTTTTTATTGA  895

seq1  GTCTACTCTTTCCAGATCTTATCCCATATGATCCCCTATCTTTAAACTAT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTCTTTCCAGATCTTATCCCATATGATCCCCTATCTTTAAACTAT  945

seq1  ATTTTCAGAGAGTTCTAAGCATATTATTAAAAAGGGGCCTTGAATCTATT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGAGAGTTCTAAGCATATTATTAAAAAGGGGCCTTGAATCTATT  995

seq1  CCTAATTTTCCTGGCCAGTCAGAGTTTGTCAACTCTTCCTAAGTTTACCC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTTTCCTGGCCAGTCAGAGTTTGTCAACTCTTCCTAAGTTTACCC  1045

seq1  AGTTCCAATTACACTGTTTGAGTTAGCTTAGGGGTGGACAGCTCAGGAAG  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAATTACACTGTTTGAGTTAGCTTAGGGGTGGACAGCTCAGGAAG  1095

seq1  ATTCCTGCGGTTATGGCCTCATTTAGAGATTCTTAGCTTTGTGCTTACCT  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGCGGTTATGGCCTCATTTAGAGATTCTTAGCTTTGTGCTTACCT  1145

seq1  TTGCTTATAGCAACCTCCACAGCATAAGGAAGAATTC  1168
      |||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATAGCAACCTCCACAGCATAAGGAAGAATTC  1182


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