BAC Information

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BAC

Clone NameB6Ng01-239K08
Chromosome5 (Build37)
Map Location 57,804,617 - 57,805,662
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455
Downstream geneLOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239K08.bB6Ng01-239K08.g
ACCGA050015GA050016
length1,1941,056
definitionB6Ng01-239K08.b B6Ng01-239K08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttggtttagttctataccccaattttttgattgggttgtttggc
tttttggtgattaacttcttgaattctttatatattttggatattagtcc
tctatcagatgtggggttactgaagttttttcccaatcagtaggctgcca
atttgtgttactgactaatgtcctttgcctacagaagctttccagtttta
tggggtcccatttatcaattcttgatcttagagcatgagccattggagtt
ctgtttaggaaattacctcctgtgccaatgagttcaaggctcttttgcac
tttctcttctattagatacagagtatctggttttatgttgagatccttaa
tctacttggacttgagctttatacaaatatggatctattttcattctgct
acatacagacagccagttagaccagcaccatttattgaagatactttctt
ttttccattgtatatttttggtgtctttgtcaaagatcaagtgacaataa
gtatatggtttcatttctgggtcttccattctattctattgatcaacgta
tctgtgtctgtaccaatatcatgccgtttttatcaccagtgctctgtagt
aaagcttgaggttagggatggtgattcccccagtcgttcttttattgtta
agaattgttccccctattctgggtttttgtttttccagatgaatttgaga
tttgctctttccatgtctttgagaattgtgttgggagtttgatgggaatt
gcattgaatctatagactgcctttggtatgatatccatttttactatgtt
aattctgccaatcagtgagcatggggagacctctctattttctgagatca
tttttcgatttcttttttgagagacttgaagttattgttatacaggtctt
tcacttgtttggttagagttacccaaatatattttaaactatttgtggct
attgagaagggaattggttccctaatttcttctcagcctgtttatccttt
gtataaggaagttacttgatttatttgataatttacatgttcttaagtta
aaaaaaaaaaacccacagacatgaccaataggcctgtgttgatatcattc
catgcccaaaactcatacgcctgttactgtgaatttgctaacgatcaatg
ctaccctgtgcgaaaatgcaaatgaatattctacactacttctc

gaattcattggaagctgatgctcactaatttttgaatagtcagtcaacaa
tcttattcatttaatttgctgttcagttatcaaaggattctgttaatgga
ggacaaaatagatttccaatgtaaactgagattgaacagtctcaaaagca
tagagctgtcacatatgaggctatgccagtgcctggcaaatacagaagtg
gatgctcacagtctctataagatggaacacatggcacccaatggagaagt
tagagaaagcacccaaggagctgaaggggtctgcaaccctataggtggaa
caacaatatgaactaaccagtactcccagagctcgtatctctagctgtat
atgtagcagaagatggcctagtcagctgactaggtgatctctgggaagag
aggccccttgttattgcaaactttatatgccccagtacaggggaatgcca
gggtcaagaagcgggagtgggtgggtaggggagcacggcttggggagggt
agagggaactttcagggtagcatttgaaatgtatataaagaaaataatct
aataaataaataaataaaacacagaaagtagacacagaaagtaataaaat
actttttaaaaaagcaaaaaaaattgtatagtaaagaagatagacttaag
taaagggatggtgctggaaaatgaataaacaaaaattaatacgaggtatc
acagaatccaagaggcataaacagtcaaatgaaactaagtgagctacagg
attctaagatgtcagatgactatgtgatagaacaatcagtaatggtatca
aaatgggagtcaaagctgacaggtaagatgttgtctctggggcaagagga
ttactattgttttaggagtggtcagctgctttctaattggacttgagttt
tacttaaagagtacacagtttggtattgaacaggctccaatggcctatga
ctagttgaggtcatagtggaaccttactattggaatatcttatgcttaca
ctcttatagtggggctaattctctcctttgatgggagaatccttattttg
cagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57804617_57805662
seq2: B6Ng01-239K08.g_67_1122

seq1  GAATTCATTGGAAGCTGATGCTCACTAATTTTTGAATAGTCAGTCAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGAAGCTGATGCTCACTAATTTTTGAATAGTCAGTCAACAA  50

seq1  TCTTATTCATTTAATTTGCTGTTCAGTTATCAAAGGATTCTGTTAATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCATTTAATTTGCTGTTCAGTTATCAAAGGATTCTGTTAATGGA  100

seq1  GGACAAAATAGATTTCCAATGTAAACTGAGATTGAACAGTCTCAAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAATAGATTTCCAATGTAAACTGAGATTGAACAGTCTCAAAAGCA  150

seq1  TAGAGCTGTCACATATGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTGTCACATATGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTG  200

seq1  GATGCTCACAGTCTCTATAAGATGGAACACATGGCACCCAATGGAGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCACAGTCTCTATAAGATGGAACACATGGCACCCAATGGAGAAGT  250

seq1  TAGAGAAAGCACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGCACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAA  300

seq1  CAACAATATGAACTAACCAGTACTCCCAGAGCTCGTATCTCTAGCTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATATGAACTAACCAGTACTCCCAGAGCTCGTATCTCTAGCTGTAT  350

seq1  ATGTAGCAGAAGATGGCCTAGTCAGCTGACTAGGTGATCTCTGGGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCAGAAGATGGCCTAGTCAGCTGACTAGGTGATCTCTGGGAAGAG  400

seq1  AGGCCCCTTGTTATTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCTTGTTATTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCA  450

seq1  GGGTCAAGAAGCGGGAGTGGGTGGGTAGGGGAGCACGGCTTGGGGAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAGAAGCGGGAGTGGGTGGGTAGGGGAGCACGGCTTGGGGAGGGT  500

seq1  AGAGGGAACTTTCAGGGTAGCATTTGAAATGTATATAAAGAAAATAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAACTTTCAGGGTAGCATTTGAAATGTATATAAAGAAAATAATCT  550

seq1  AATAAATAAATAAATAAAACACAGAAAGTAGACACAGAAAGTAATAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAAACACAGAAAGTAGACACAGAAAGTAATAAAAT  600

seq1  ACTTTTTAAAAAAGCAAAAAAAATTGTATAGTAAAGAAGATAGACTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAAAAAAGCAAAAAAAATTGTATAGTAAAGAAGATAGACTTAAG  650

seq1  TAAAGGGATGGTGCTGGAAAATGAATAAACAAAAATTAATACGAGGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGATGGTGCTGGAAAATGAATAAACAAAAATTAATACGAGGTATC  700

seq1  ACAGAATCCAAGAGGCATAAACAGTCAAATGAAACTAAGTGAGCTACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCCAAGAGGCATAAACAGTCAAATGAAACTAAGTGAGCTACAGG  750

seq1  ATTCTAAGATGTCAGATGACTATGTGATAGAACAATCAGTAATGGTATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGATGTCAGATGACTATGTGATAGAACAATCAGTAATGGTATCA  800

seq1  AAATGGGAGTCAAAGCTGACAGGTAAGATGTTGTCTCTGGGGCAAGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGAGTCAAAGCTGACAGGTAAGATGTTGTCTCTGGGGCAAGAGGA  850

seq1  ATACTATTG-TTTAGGAGTGGTCAGCTGCTTTCTAATTGGACTTGAG-TT  898
       |||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TTACTATTGTTTTAGGAGTGGTCAGCTGCTTTCTAATTGGACTTGAGTTT  900

seq1  TACTTAAAGAAGTACACAG-TTGGTA-TGAACAAGCT-CAATGGCCTATG  945
      ||||||||| ||||||||| |||||| |||||| ||| ||||||||||||
seq2  TACTTAAAG-AGTACACAGTTTGGTATTGAACAGGCTCCAATGGCCTATG  949

seq1  ACTAG-TGAGGTCATAGTGGAACCTTACTATT-GAATATC-TATGCTTAC  992
      ||||| |||||||||||||||||||||||||| ||||||| |||||||||
seq2  ACTAGTTGAGGTCATAGTGGAACCTTACTATTGGAATATCTTATGCTTAC  999

seq1  ACTCTTATAGTTGGGCT-ATTCTCTTCTTTGATGGGAGAAT-CTTA-TTT  1039
      ||||||||||| ||||| ||||||| ||||||||||||||| |||| |||
seq2  ACTCTTATAGTGGGGCTAATTCTCTCCTTTGATGGGAGAATCCTTATTTT  1049

seq1  GCAGCAG  1046
      |||||||
seq2  GCAGCAG  1056


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