BAC Information

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BAC

Clone NameB6Ng01-240A13
Chromosome5 (Build37)
Map Location 145,881,354 - 145,881,762
singlet/doubletsinglet
Overlap geneArpc1b
Upstream geneLmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a
Downstream genePdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240A13.bB6Ng01-240A13.g
ACCGA050305GA050306
length1,191403
definitionB6Ng01-240A13.b B6Ng01-240A13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttcaaggagtttgtgaataagctactaaaaataactagtagaa
ttttttggagatcaccaagtaggggttccttttgttacacaattgtctta
tgagaatgctaatacagctcaatgtgggcatctggtcatacaaagcaaag
gcagacttacctggatatattcacctttgtacagaaattgtgccctcata
caatcagggtcttgctatggctgctgccttgcaggggactacagtacaag
caatgctttcacagcaccaaggttataaggaatgctttaattatgatggg
cataaatcattttaggaaagactgtccaaaaatagaggcatagatagaca
atagaatcgctccctggaatctgtcctcactgcaggagggataatcattg
ggcaataggctcaaattaagaaatatttacatttgagttaatgcaaagct
cagagtggtcacaggaaggtttgtgtggcactgcttttgtcttgaaaacc
ctgcatatggaagtttttgggtcctcgcctcttctctgggtaattacttt
taagccaaaacagcattattacagatatatccaggtattgttcaaaataa
agtttatacttaagatttatgaaaagtctatgaggctgtggaacttgtag
aagcattacaatctggcctgcctactccataaagaattattattgatttg
gagggttttatttttcttagcatcctaataattttaaagggtttgcttct
agtgagcttgtaatcattggaaagttttgcctctaggaatggctagtagc
cttacattatgtaaaataatttttgtctcttcttcaatacaagaagttag
gactttgaatctttcagtgtatattattcattacatgtatattttattag
ctaatccttctgacagggaattttactacaaaccttttgctcttatacaa
tgagctttaaattttggggagtagttgttgctccagaaagatttaagcat
atctttttcaatatttgggcctcaattatatcctagaaaattgtggaaga
aaaattcaaggaagaaacatgattactccacctccagttattttccaagc
tcaggagatggttaattggcttaggtcctcaatttagtgtacctagagaa
ctaggcttgtgaagttccaagaggagtgcactatattgcta
actgtgcgctgaagatgacttgagttaggactattctcctgcctctgtct
ctcaagcttgtatcaccgcaccggatttatgtagtgctgaggagggaacc
ctcactagcgctaggcaagcactctgccaactgagctacaatccccagct
ctggttgtttcttgagacaaggtctgggtagctcagggtggcctcagatc
ttattcgtccattgctggaattacaggcatgtgctgtcaagcccagccta
ggtataccaccccactctcctctcccctcagctagaggtggggtgggggt
ggggcagaggtgagcttttggcttacacatctggccgacagtgccttgat
gtctctccatagtctcgaaacatcctgagtctggggaggtgagggaatgg
gtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145881354_145881762
seq2: B6Ng01-240A13.g_66_474

seq1  GAATTCACTGTGCGCTGAAGATGACTTGAGTTAGGACTATTCTCCTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGCGCTGAAGATGACTTGAGTTAGGACTATTCTCCTGCCT  50

seq1  CTGTCTCTCAAGCTTGTATCACCGCACCGGATTTATGTAGTGCTGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCAAGCTTGTATCACCGCACCGGATTTATGTAGTGCTGAGGAG  100

seq1  GGAACCCTCACTAGCGCTAGGCAAGCACTCTGCCAACTGAGCTACAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTCACTAGCGCTAGGCAAGCACTCTGCCAACTGAGCTACAATCC  150

seq1  CCAGCTCTGGTTGTTTCTTGAGACAAGGTCTGGGTAGCTCAGGGTGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTGGTTGTTTCTTGAGACAAGGTCTGGGTAGCTCAGGGTGGCCT  200

seq1  CAGATCTTATTCGTCCATTGCTGGAATTACAGGCATGTGCTGTCAAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTATTCGTCCATTGCTGGAATTACAGGCATGTGCTGTCAAGCCC  250

seq1  AGCCTAGGTATACCACCCCACTCTCCTCTCCCCTCAGCTAGAGGTGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGTATACCACCCCACTCTCCTCTCCCCTCAGCTAGAGGTGGGGT  300

seq1  GGGGGTGGGGCAGAGGTGAGCTTTTGGCTTACACAGCTGGCCGACAGTGC  350
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGGGGTGGGGCAGAGGTGAGCTTTTGGCTTACACATCTGGCCGACAGTGC  350

seq1  CATGATGTCTCTCCATAGTCTCGAAACATCCTGAGTCTGGGGAGGTGAGG  400
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGTCTCTCCATAGTCTCGAAACATCCTGAGTCTGGGGAGGTGAGG  400

seq1  GAAGGGGTT  409
      ||| |||||
seq2  GAATGGGTT  409