BAC Information

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BAC

Clone NameB6Ng01-240C09
Chromosome5 (Build37)
Map Location 18,810,656 - 18,811,609
singlet/doubletsinglet
Overlap geneMagi2
Upstream geneGnai1, LOC100041818, LOC668167, 4921504A21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240C09.bB6Ng01-240C09.g
ACCGA050392GA050393
length1,0391,206
definitionB6Ng01-240C09.b B6Ng01-240C09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctctagactgggacatcaagtctttacaggtcaaagtacttccc
ctcctattgatgccagacaatgccatcctcagttacatttacagctggac
ccatgggtcccccatgtgtactctttagttggtggtttagtacctgggag
ctctggggggtctggttggttgataatgttgttcttcctatgggattgca
atccccttctgctccttcaatccttcccctaactcctccattggggttcc
agtactcagtttgatggttggctgcaagcatcagcatctgtcaggctctg
gcagagcctctcaggagacagctatataaggttcctatcagcaagcactt
cttggcatcaacaatagtgttagggtttggtgtctacagatggaatagat
tcccgagatgggacagtctctggatggcatttccttcagtcttcgatcca
ctctttgtccctgaatttcctttagacaagagcaattataggttaaaatt
tttgagatgggtaggtagcttcttcccacaacagggggacatgcctaacc
tatggatatggtctctacaggttccctcagcatcagaaatcatcctgtga
aagtatgttgaacatttttaaaattttgttttaatttttctttatttttg
agaaatttaagcatgtaaatacaatggtacctatgcccccccttcaacat
cccctgtttcctctcttccaaatgttgtcagaactttttgctttttttct
aagtttgatatgactaagctcaattctgcccctatgttcacggtctctgc
tgtccattagagcatgggaatcctgcttgtggtcatatacataagagaag
gattctccctccctcagcaactactcattgccaataacttctcaataggt
tgtgtgatgtgtgtgtctacatgtgtctgtgtgtgtctatgtgtatatgt
acatgtgtgtataggtagagagtgtgtgtaccagcacttgttgttactgg
tgtatagcccataggagtcaattttcttcttggttatgt

gaattctctacagcagaatttcaaatggccaagaaacccatgaagaaatt
tttaatatccttaggcatcagagaaatgcaaatcagaaagaattaatatt
ccatcttatacctgtcagaacgtctaagatgaaagtcacaagcaacagtt
catgctgaagaggatgtggagcaaggaaaacactcctccactgctgttgg
gagtccaaacatatacaaccacttttggaagtcaatatggtggtttctct
gaaaactgaaaatcccacctcaagacccagctattccactcttggcaata
tacacaaaggatacttcatcctatgacaaggatgcttgcccaactatgtt
caccgcagctttatcacaaaagccaggaactagaaacaacctagatgtcc
ttcaaccaaagtgtggataacaaaaatctagtacatttacacaaaggagt
attaatcagctattaaaaacaatgacatcatgacatttttcaggcaaatg
gatagaacttgaaaaaaaatctgagtgaggtagcccagacccagaagaca
acatgatatgtactcatttataagtaaatactagctgtaaagacaatcgt
gctatggtcaacagacccagagagggtgaataacaaggaggccttggggg
aggggctcaaggatctctctgggaagtatagattttgcaaggagtgaggg
atcaggtagtggagagaaaatctgggagaaaaactggggggcgtttcgag
ggcagggtggaaacctagtgcaatagaagctccatgggatctatgagagt
aaccctagaaaagactcggagtaatggagacacacagcctgaacagacta
tcttctacaactaggcaaggatttaaatggagggaatgggacaccagccc
agcatgtctgcctctctgccagggttgttctggagcactgccagcaagct
gctcagaggagacagaacaaggtcaggaaatggggattctctgttcccaa
cttccccagtggaggacagcagagtctgggatccttgctggtggttctca
gcctcttgtgttaccaagcactgctgggtgcacttctggaacagtggtcc
agtctagctttccctcagggtgtccttccatcaggctgcaacggtaacgc
cgagaacttagggatgggccagaaacctggagtgtggttttcaaaaatga
tgtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18810656_18811609
seq2: B6Ng01-240C09.b_127_1083

seq1  TTACATTTACAGCTGGACCCATGGGTCCCCCATGTGTACTCTTTAGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTACAGCTGGACCCATGGGTCCCCCATGTGTACTCTTTAGTTGG  50

seq1  TGGTTTAGTACCTGGGAGCTCTGGGGGGTCTGGTTGGTTGATAATGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGTACCTGGGAGCTCTGGGGGGTCTGGTTGGTTGATAATGTTGT  100

seq1  TCTTCCTATGGGATTGCAATCCCCTTCTGCTCCTTCAATCCTTCCCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTATGGGATTGCAATCCCCTTCTGCTCCTTCAATCCTTCCCCTAA  150

seq1  CTCCTCCATTGGGGTTCCAGTACTCAGTTTGATGGTTGGCTGCAAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCATTGGGGTTCCAGTACTCAGTTTGATGGTTGGCTGCAAGCATC  200

seq1  AGCATCTGTCAGGCTCTGGCAGAGCCTCTCAGGAGACAGCTATATAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGTCAGGCTCTGGCAGAGCCTCTCAGGAGACAGCTATATAAGGT  250

seq1  TCCTATCAGCAAGCACTTCTTGGCATCAACAATAGTGTTAGGGTTTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCAGCAAGCACTTCTTGGCATCAACAATAGTGTTAGGGTTTGGTG  300

seq1  TCTACAGATGGAATAGATTCCCGAGATGGGACAGTCTCTGGATGGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGATGGAATAGATTCCCGAGATGGGACAGTCTCTGGATGGCATTT  350

seq1  CCTTCAGTCTTCGATCCACTCTTTGTCCCTGAATTTCCTTTAGACAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTCTTCGATCCACTCTTTGTCCCTGAATTTCCTTTAGACAAGAG  400

seq1  CAATTATAGGTTAAAATTTTTGAGATGGGTAGGTAGCTTCTTCCCACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATAGGTTAAAATTTTTGAGATGGGTAGGTAGCTTCTTCCCACAAC  450

seq1  AGGGGGACATGCCTAACCTATGGATATGGTCTCTACAGGTTCCCTCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGACATGCCTAACCTATGGATATGGTCTCTACAGGTTCCCTCAGCA  500

seq1  TCAGAAATCATCCTGTGAAAGTATGTTGAACATTTTTAAAATTTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCATCCTGTGAAAGTATGTTGAACATTTTTAAAATTTTGTTTT  550

seq1  AATTTTTCTTTATTTTTGAGAAATTTAAGCATGTAAATACAATGGTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTTTATTTTTGAGAAATTTAAGCATGTAAATACAATGGTACCT  600

seq1  ATGCCCCCCCTTCAACATCCCCTGTTTCCTCTCTTCCAAATGTTGTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCCCCTTCAACATCCCCTGTTTCCTCTCTTCCAAATGTTGTCAGA  650

seq1  ACTTTTTGCTTTTTTTCTAAGTTTGATATGACTAAGCTCAATTCTGCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGCTTTTTTTCTAAGTTTGATATGACTAAGCTCAATTCTGCCCC  700

seq1  TATGTTCACGGTCTCTGCTGTCCATTAGAGCATGGGAATCCTGCTTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCACGGTCTCTGCTGTCCATTAGAGCATGGGAATCCTGCTTGTGG  750

seq1  TCATATACATAAGAGAAGGATTCTCCCTCCCTCAGCAACTACTCATTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATACATAAGAGAAGGATTCTCCCTCCCTCAGCAACTACTCATTGCC  800

seq1  AATAACTTCTCAATAGGTTGTGTGATGTGTGTGTCTACATGTGTCTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTCTCAATAGGTTGTGTGATGTGTGTGTCTACATGTGTCTGTGT  850

seq1  GTGTCTATGTGTATATGTACATGTGTGTATAGGTAAGAGAGTGTGTGTAC  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGTCTATGTGTATATGTACATGTGTGTATAGGT-AGAGAGTGTGTGTAC  899

seq1  CAAGCAC-TGT--GTACTGGTGTAATAGCCCATAGGAGTC-ATTTTCTTC  946
      | ||||| |||   ||||||||| |||||||||||||||| |||||||||
seq2  C-AGCACTTGTTGTTACTGGTGT-ATAGCCCATAGGAGTCAATTTTCTTC  947

seq1  T--GTTATGT  954
      |  |||||||
seq2  TTGGTTATGT  957


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