BAC Information

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BAC

Clone NameB6Ng01-240E05
Chromosome5 (Build37)3 (Build37)
Map Location 17,832,350 - 17,832,891125,552,122 - 125,552,625
singlet/doubletsingletsinglet
Overlap geneGnai1
Upstream geneLOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
Downstream geneLOC100041818, LOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240E05.bB6Ng01-240E05.g
ACCGA050478GA050479
length1,034703
definitionB6Ng01-240E05.b B6Ng01-240E05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,832,350 - 17,832,891)(125,552,122 - 125,552,625)
sequence
gaattcatgtgcatttgtgcatatgtggatgtgtgtgttcatgcccctag
atgccagagaggtgtctgagatcctcagagctggaggtacagaaagctga
gctgcctgacctgggtgctgggaactaaactctggtccactgcaagagca
gcaaatgttcttaaacactgagccatctctccagctcctggaaaaatatt
ttctccttgtctagcatgcatatatatatatatatatatatatatatata
tatatatatatatataaatataatgttatcaaggttcatctatgttggta
gatgcttctaaacttccttttcttttaaggttgattaataacccattatt
tatttacatatcacatttattcttaaactcatgtacagttgagttgcttt
acttttggctgctatgaatgctgcagagtagaaaattctctttgagactc
tggttttgggctatgtgtatccataactaaaattgctggatcatatagta
attctagtttaaataacatttttaaattttaaatcattgttctgtttgtg
taccagctgtacagcttcacagtcccaccctcagtgtgcaaagttttgat
tttttccagaaaaaattattatattattatatataaatattattacatta
ataacaatatcagcaatgttattagttaaattatcatattgttaatatat
tctatatattatatataactattatttatcatattaatatactaaagtat
atatatcctagtagatgtgagttggtatttcatgttggttttgatttgca
gagaaaataaagctagtaccactcccagcccgaggcacagccttttccac
agtgttgtttgtgcgttcatatgttcacacagtatatttatctgtccata
tatgttcatgctttggggcattttttgtacagtttttgtgttgactattc
aaactatcacatttatgcatttaaaatgccattgcataaatatatcttca
tataaaccccttatcccctaaatattttcacctg

gaattcacaggcactgaattatatgtacaggaactgtagagttcatcaga
ctgggttctagagctgcaagcagaagtgaagacaagcatatattcctatc
ctagaagctatctccaactgataagcacttgcaaaggaaaatttagtttc
ctacaagggattcctcagaagaaacaaactactcttaaagggtaggccac
atgcccagaagttgaaggcaaacagaaaataaaatcaaagcagctttgga
ggtcacttgtctcataatgttgtggtggggttttgttttgttttaaatta
tatctcaattttattttcattattttatattatttatgtaagtttttctc
tttttactctactggttatatatatatatatatatatatatatatatata
tatatctgtttaggagttttatgggtttcatgaatatatatataaataaa
aaaagatagaaaaaaatagagatagatatataaaaaaaaaaaacaaaaac
ccacactcacactggggggtgttagcgagctatggctttctttatttttg
tgtttgtgtgtctccttcgcgcgtgcgtgtgagtctcagtgagtgatttc
cttccttactttgaaagcgcgcgagatcttgaatctgcgcgtgtgcgcgt
gtgtgtgtgagtgagagagagataaatatataaatatatatatgtgtatg
tat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17832350_17832891
seq2: B6Ng01-240E05.b_528_1073 (reverse)

seq1  CAGGTG-AAATATTTA-GGGATA--GGGGTTATATGAAGATATATTTATG  46
      |||||| ||||||||| ||||||  ||| |||||||||||||||||||||
seq2  CAGGTGAAAATATTTAGGGGATAAGGGGTTTATATGAAGATATATTTATG  50

seq1  CAAT-GCATTTTAAATGCATTAAATGTGATAGTTTG-ATAGTCAACACAA  94
      |||| |||||||||||||| |||||||||||||||| |||||||||||||
seq2  CAATGGCATTTTAAATGCA-TAAATGTGATAGTTTGAATAGTCAACACAA  99

seq1  AAACTGTACAAAAAATGCCCCAAAGCATGAACATATATGGACAGATTAAA  144
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAACTGTACAAAAAATGCCCCAAAGCATGAACATATATGGACAGA-TAAA  148

seq1  TATACTGTGTGAACATATGAACGCACAAACAACACTGTGGAAAAGGCTGT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTGTGAACATATGAACGCACAAACAACACTGTGGAAAAGGCTGT  198

seq1  GCCTCGGGCTGGGAGTGGTACTAGCTTTATTTTCTCTGCAAATCAAAACC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGGGCTGGGAGTGGTACTAGCTTTATTTTCTCTGCAAATCAAAACC  248

seq1  AACATGAAATACCAACTCACATCTACTAGGATATATATACTTTAGTATAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAATACCAACTCACATCTACTAGGATATATATACTTTAGTATAT  298

seq1  TAATATGATAAATAATAGTTATATATAATATATAGAATATATTAACAATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGATAAATAATAGTTATATATAATATATAGAATATATTAACAATA  348

seq1  TGATAATTTAACTAATAACATTGCTGATATTGTTATTAATGTAATAATAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTTAACTAATAACATTGCTGATATTGTTATTAATGTAATAATAT  398

seq1  TTATATATAATAATATAATAATTTTTTCTGGAAAAAATCAAAACTTTGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATAATAATATAATAATTTTTTCTGGAAAAAATCAAAACTTTGCA  448

seq1  CACTGAGGGTGGGACTGTGAAGCTGTACAGCTGGTACACAAACAGAACAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGGTGGGACTGTGAAGCTGTACAGCTGGTACACAAACAGAACAA  498

seq1  TGATTTAAAATTTAAAAATGTTATTTAAACTAGAATTACTATATGATC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAAAATTTAAAAATGTTATTTAAACTAGAATTACTATATGATC  546


seq1: chr3_125552122_125552625
seq2: B6Ng01-240E05.g_404_764

seq1  TTTTTCTCTTTT---TCTATTATCAATTTATTCTTAACCACTTTGGAGGT  47
      ||||||||||||   |||| |    || |||   ||             |
seq2  TTTTTCTCTTTTTACTCTACTGGTTATATATATATA-------------T  37

seq1  ATTTTGATGAAGCACATAGATTATTAAATTTCCTTGTTAGGGCCTGCACT  97
      || |  ||     | ||| ||   || || ||  ||||  ||     | |
seq2  ATATATAT-----ATATATATATATATATATC--TGTTTAGG-----AGT  75

seq1  TCCCAAAGCTTT--GGAAAATGTGTGTAACTAAATCTGTGCTTGACCACT  145
      |   |  | |||   ||| || | | ||| ||||             |  
seq2  T-TTATGGGTTTCATGAATATATATATAAATAAA-------------AAA  111

seq1  AGATGTCACCAAA---GGATTGTTCACTGAAACAGGCAAGCGGTGCCTGT  192
      ||||   |  |||    ||| | |   | ||| |   ||           
seq2  AGATAGAAAAAAATAGAGATAGATATATAAAAAAAAAAA-----------  150

seq1  CAGAAAAACCATTTCCTCTATTTTTCAATGTAATCGAGAAGCAACAGTCG  242
       | |||||||    |    | |      ||| | ||   ||| |      
seq2  -ACAAAAACCCACACTCACACTGGGGGGTGTTAGCG---AGCTA------  190

seq1  TAGCATAATATTCTTAATAATGCCCGCCTCCTTG-GTGTCTCACTATTAT  291
      | ||      ||||| ||  |       |  ||| ||||||| || |   
seq2  TGGC-----TTTCTTTATTTT-----TGTGTTTGTGTGTCTC-CT-TCGC  228

seq1  GCTTTTATGTGCAACATTCTTTTTTGAAACAGTCTTTAAATAATAAAAAA  341
      || |   ||||    | |||         ||||               | 
seq2  GCGTGCGTGTG----AGTCT---------CAGT--------------GAG  251

seq1  TGATTCAAATACTATAGAGAAGTCATTATCATTTGAGATATAGGTGACAA  391
      |||||    | ||         || |||   |||||            ||
seq2  TGATT----TCCT---------TCCTTA--CTTTGA------------AA  274

seq1  ATGCTATAGCCTTCAGAATTATATATATATATATATACTATATAATATAT  441
        ||   ||        ||  |  || |     | | |            
seq2  GCGCGCGAG--------ATCTTGAATCTGCGCGTGTGC-----------G  305

seq1  AGTATAT-AATGAATAATATATTATATATAATATATATACACACACATAT  490
       || | |   ||| | | |    | | |||| ||||||    | | ||||
seq2  CGTGTGTGTGTGAGTGAGA---GAGAGATAA-ATATAT----AAATATAT  347

seq1  ATATGTGTGTGTAT  504
      |||||||| |||||
seq2  ATATGTGTATGTAT  361


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