BAC Information

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BAC

Clone NameB6Ng01-240M05
Chromosome5 (Build37)
Map Location 146,405,927 - 146,407,087
singlet/doubletsinglet
Overlap geneLOC667065
Upstream geneEG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375
Downstream geneCyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240M05.bB6Ng01-240M05.g
ACCGA050846GA050847
length1,1741,190
definitionB6Ng01-240M05.b B6Ng01-240M05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcatgtttttctctcttgcccagctataggctgttgtatccttg
atttgaccaatcagaagaagctggataagaatgttttccaaatactgatg
caggagatgcttcatgataaggacaataccaaagtctgaaccagagctct
gcactggatctttgggtacagaaaacagcaattgaatgcacagtgaacaa
agccatctcccagtagtttaatgatatcacttaggctagttatggcctaa
cttagttttggttatccctagatccatgagaactcagcacacatgaatag
cagcaattggctaacatgcaaattcactattcacaaagctctctgggaaa
tgggcaaggagggagcccagttgttgatttgtttcagtttttgatgatgg
tcttgcttgtctcttctcttctatgtgtgtgtgtgtggatgcaagtgttt
ccgtttcccttatagatatggaacccttacacaaggactttttaagaaac
agggaattcctgggcccaaagctctgacatttttaggcactgtgctgaat
tattacaaggtgagtgttgatttagctttccttttggcttctgcttgcgg
ctaataatgtcttagttctattaaatgcttctactgaggaaatgctgaga
tatcagatcctcatactctgttttctcttgattcctgtcaaaatccagtg
gtcctctgagatattttagccatgtaaaactaattaaatatttgtatgtg
tttatattttatagtatgtatatgggtatctgcacatatacgaaatgtcc
atatatgtgttcagggcatatgcatgtatatgtgtgtggatgtggatgct
gtgtgcctgtgtaattttatagtatgtatatgggcatttgcatgtgtgtg
agtgcccatatgtgtgtgcagtgaatatgcatgtatatgtgtgcgtttga
ggtcagaggttcacactgtggtgttttccttgattgctccttcagatcat
cctttgagtcagaagttctcctcacctttgacctgctcctcctctgactt
gatttagtttaggtcaacccagctttgctctggggctccatttcctctga
ctcttggcaactgagatctataccttctcccagggattacacaagacctt
cagagatcgaattcttgtttttga
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcaccagggaaatgcaaatcaaaataactctgagat
tccatctcacaccagccagaatggataagatcaaaaattcaggtgagagc
agatgctggtgaggatgtggagaaagaggaacactcctccattattggtg
gaattgcaagcttgtacaaccactctggaaatcagtctggtggttcctct
gaaaattggacatagtactcctggaggatcccacaatacctctcctgggc
atatatccagaagatgttccaactagtaagaaagaaacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtatgtttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcacatgatatgtactcactgataagtggatattagcccagaaac
aaagaatacccaagatacaagatacaatttgcaaaacacatgaaactcaa
gaagaacaaagaccaaagtgtggacactttgccccttcttaaaattggga
acaaaacacccatggaaggagttacagagacaaagattggagctgagatg
aaaggatggaccatctagagactgccatatccagggatccatcccataat
tagcctccaaacgctgacaccattgcacacactagcaagattttgctgaa
aggaccctgatatagctgtctcttgcgaggctattgcaggggcctaacaa
acacataagtggatgctcacagtcagctattggatggaacacagggcccc
caatgtaggagctagagaaagtacccaaggactaagggtctgcaaccgta
tagtgacacaatatgactacccagtacctccccagagctggtgtctctta
gctgcattatgttatcagagatgcctaggtggccatcagtgtaaagagag
agccaatgtcggtgcagacttatctggcctcagtacagtgaacgcccaag
gtcagaatgcgggagtgctacatctactgcgtgttcgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_146405927_146407087
seq2: B6Ng01-240M05.b_42_1215 (reverse)

seq1  TCAAAAAC-AGAATTTGA-CTCTGAAGGTC-TGTGTAAATACCTGGGAGG  47
      |||||||| |||||| || ||||||||||| ||||| ||| |||||||| 
seq2  TCAAAAACAAGAATTCGATCTCTGAAGGTCTTGTGT-AATCCCTGGGAGA  49

seq1  AGGTAATAGAACACATGTG-CAAGAGTCAGAGAAAAGAGACCCCAAGAGC  96
      |||| ||||| | ||  || |||||||||||| |||  || ||| |||||
seq2  AGGT-ATAGATCTCAGTTGCCAAGAGTCAGAGGAAATGGAGCCCCAGAGC  98

seq1  -AAGCTGG--TTAACTAAACT-AATCAAGTCAGA-GAGAGCCAGGTCAAA  141
       |||||||  | | ||||||| |||||||||||| |||   |||||||||
seq2  AAAGCTGGGTTGACCTAAACTAAATCAAGTCAGAGGAGGAGCAGGTCAAA  148

seq1  -GTGA-GAGA--CTCTGACTCAAAGGATGAACTGAA-GAGCAATC-AGGA  185
       |||| ||||   ||||||||||||||||| ||||| |||||||| ||||
seq2  GGTGAGGAGAACTTCTGACTCAAAGGATGATCTGAAGGAGCAATCAAGGA  198

seq1  AAACA-CACAGTGTGAACCTCTGACCTCAAACGCACACATATACATGCAT  234
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCACAGTGTGAACCTCTGACCTCAAACGCACACATATACATGCAT  248

seq1  ATTCACCTGCACACACATATGGGCACTCACACACATGCAAATGCCCATAT  284
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCA-CTGCACACACATATGGGCACTCACACACATGCAAATGCCCATAT  297

seq1  ACATACTATAAAATTACACAGGCACACAGCATCCACATCCACACACATAT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTATAAAATTACACAGGCACACAGCATCCACATCCACACACATAT  347

seq1  ACATGCATATGCCCCTGAACACATATATGGACA-TTCGTATATGTGCAGA  383
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  ACATGCATATG-CCCTGAACACATATATGGACATTTCGTATATGTGCAGA  396

seq1  TACCCATATACATACTATAAAATATAAACACATACAAATATTTAATTAGT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATATACATACTATAAAATATAAACACATACAAATATTTAATTAGT  446

seq1  TTTACATGGCTAAAATATCTCAGAGGACCACTGGATTTTGACAGGAATCA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGGCTAAAATATCTCAGAGGACCACTGGATTTTGACAGGAATCA  496

seq1  AGAGAAAACAGAGTATGAGGATCTGATATCTCAGCATTTCCTCAGTAGAA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACAGAGTATGAGGATCTGATATCTCAGCATTTCCTCAGTAGAA  546

seq1  GCATTTAATAGAACTAAGACATTATTAGCCGCAAGCAGAAGCCAAAAGGA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAATAGAACTAAGACATTATTAGCCGCAAGCAGAAGCCAAAAGGA  596

seq1  AAGCTAAATCAACACTCACCTTGTAATAATTCAGCACAGTGCCTAAAAAT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAATCAACACTCACCTTGTAATAATTCAGCACAGTGCCTAAAAAT  646

seq1  GTCAGAGCTTTGGGCCCAGGAATTCCCTGTTTCTTAAAAAGTCCTTGTGT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGCTTTGGGCCCAGGAATTCCCTGTTTCTTAAAAAGTCCTTGTGT  696

seq1  AAGGGTTCCATATCTATAAGGGAAACGGAAACACTTGCATCCACACACAC  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTCCATATCTATAAGGGAAACGGAAACACTTGCATCCACACACAC  746

seq1  ACACATAGAAGAGAAGAGACAAGCAAGACCATCATCAAAAACTGAAACAA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGAAGAGAAGAGACAAGCAAGACCATCATCAAAAACTGAAACAA  796

seq1  ATCAACAACTGGGCTCCCTCCTTGCCCATTTCCCAGAGAGCTTTGTGAAT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAACTGGGCTCCCTCCTTGCCCATTTCCCAGAGAGCTTTGTGAAT  846

seq1  AGTGAATTTGCATGTTAGCCAATTGCTGCTATTCATGTGTGCTGAGTTCT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATTTGCATGTTAGCCAATTGCTGCTATTCATGTGTGCTGAGTTCT  896

seq1  CATGGATCTAGGGATAACCAAAACTAAGTTAGGCCATAACTAGCCTAAGT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATCTAGGGATAACCAAAACTAAGTTAGGCCATAACTAGCCTAAGT  946

seq1  GATATCATTAAACTACTGGGAGATGGCTTTGTTCACTGTGCATTCAATTG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATTAAACTACTGGGAGATGGCTTTGTTCACTGTGCATTCAATTG  996

seq1  CTGTTTTCTGTACCCAAAGATCCAGTGCAGAGCTCTGGTTCAGACTTTGG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTGTACCCAAAGATCCAGTGCAGAGCTCTGGTTCAGACTTTGG  1046

seq1  TATTGTCCTTATCATGAAGCATCTCCTGCATCAGTATTTGGAAAACATTC  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCCTTATCATGAAGCATCTCCTGCATCAGTATTTGGAAAACATTC  1096

seq1  TTATCCAGCTTCTTCTGATTGGTCAAATCAAGGATACAACAGCCTATAGC  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGCTTCTTCTGATTGGTCAAATCAAGGATACAACAGCCTATAGC  1146

seq1  TGGGCAAGAGAGAAAAACATGAGAATTC  1161
      ||||||||||||||||||||||||||||
seq2  TGGGCAAGAGAGAAAAACATGAGAATTC  1174