BAC Information

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BAC

Clone NameB6Ng01-241J24
Chromosome5 (Build37)
Map Location 14,598,036 - 14,713,694
singlet/doubletdoublet
Overlap genePclo
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241J24.bB6Ng01-241J24.g
ACCGA051490GA051491
length944643
definitionB6Ng01-241J24.b B6Ng01-241J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,598,036 - 14,598,977)(14,713,053 - 14,713,694)
sequence
gaattcacacagcctacttggaaaacaagatgtttttctggaggttattg
tgaactcaacttatggattataaggggaatatttaccttaaaaattactg
agcagcagtgtgtaaaacatctagaataaaggccaaactaaagtcagaca
cttcagtttagaaggttgtgctataaatttcaggagagaaaattaattta
gaaaaacaaatggacaggaatttggattccacgtctaattaatggttagc
gtgggaaagttttggcagtcataacccatcatgaagttaagttcacaaga
aggagcaaagatttttatttacacatactgcagacatattcatggctcta
aaacacccattaaaatagagatggaagaggggcttgcaaaagcagagaat
taaaggtgaattcatctggggacttacagaatttcaaacttcatctttat
gcacagggatattcagcttctctacggccatttccgttatcagattgagg
ctaagtccctatggtcctactttcctgagggttttttttttctttaaata
ctcttgaggttttttttttttttctttaaatgctcttgagtgtttcaaga
atataactttatatttctctagttatattttatttttatattatatgata
gattacattaaattttagtattttgatgatgatacttagaataagacatt
cttggatatggcatatgatgctttttaattcaattttgttgaatttaatc
tggtaatttttctaggaactcattttgtttagtcattctagggaagttta
taactcatcaagatacatttgataaagagtgtgtatgtgtgaaattaaag
tatgtcacctgaagctaagaaattggctcatgtatattaataatatacca
taatagtaatgatagcttattgcttgttgagctattttattcca
gaattcttgcttaatctgatgtttcagaagctttaactcataaggatcct
ccatcgaatcctcctctgccttcacatagctatgcagtctggaggaagtc
tgcaaaggcgctaggaagtctgtcacttcttgagacctccgtgtctcagt
ggttctaaggagacgatctgttttggacagatccttttcatggagactaa
atgcagagctcaaagctgctgtccctttggtaatgtctccaatgtcatct
attaggacataattccttgaagtatggtggtcaatgtctgcatagaagga
gtctgcagatatgcttgatattggactgcttgccatactgcttctttcct
ccaaacctattctcaagtctaaactattgtacttactcccgagatgggaa
acagcatacgtattatcagtagaaactggagcaatcatcaggggttggtt
gcgaatcacttcataggtagaagttatcttaggctccaaatacaatgtgg
tttgccgaggcttttgttgtatcaccatcatctgtgatggtaattgatag
gatggctgtggagttggggtaggttgagcctggggtgtgaaggacatggt
ggccacagcttgaaaggttggttgattctgatactggtgacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14598036_14598977
seq2: B6Ng01-241J24.b_46_989

seq1  GAATTCACACAGCCTACTTGGAAAACAAGATGTTTTTCTGGAGGTTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGCCTACTTGGAAAACAAGATGTTTTTCTGGAGGTTATTG  50

seq1  TGAACTCAACTTATGGATTATAAGGGGAATATTTACCTTAAAAATTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAACTTATGGATTATAAGGGGAATATTTACCTTAAAAATTACTG  100

seq1  AGCAGCAGTGTGTAAAACATCTAGAATAAAGGCCAAACTAAAGTCAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGTGTGTAAAACATCTAGAATAAAGGCCAAACTAAAGTCAGACA  150

seq1  CTTCAGTTTAGAAGGTTGTGCTATAAATTTCAGGAGAGAAAATTAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTTAGAAGGTTGTGCTATAAATTTCAGGAGAGAAAATTAATTTA  200

seq1  GAAAAACAAATGGACAGGAATTTGGATTCCACGTCTAATTAATGGTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAATGGACAGGAATTTGGATTCCACGTCTAATTAATGGTTAGC  250

seq1  GTGGGAAAGTTTTGGCAGTCATAACCCATCATGAAGTTAAGTTCACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAAGTTTTGGCAGTCATAACCCATCATGAAGTTAAGTTCACAAGA  300

seq1  AGGAGCAAAGATTTTTATTTACACATACTGCAGACATATTCATGGCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAAAGATTTTTATTTACACATACTGCAGACATATTCATGGCTCTA  350

seq1  AAACACCCATTAAAATAGAGATGGAAGAGGGGCTTGCAAAAGCAGAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCATTAAAATAGAGATGGAAGAGGGGCTTGCAAAAGCAGAGAAT  400

seq1  TAAAGGTGAATTCATCTGGGGACTTACAGAATTTCAAACTTCATCTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGAATTCATCTGGGGACTTACAGAATTTCAAACTTCATCTTTAT  450

seq1  GCACAGGGATATTCAGCTTCTCTACGGCCATTTCCGTTATCAGATTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGATATTCAGCTTCTCTACGGCCATTTCCGTTATCAGATTGAGG  500

seq1  CTAAGTCCCTATGGTCCTACTTTCCTGAGGGTTTTTTTTTTCTTTAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCCCTATGGTCCTACTTTCCTGAGGGTTTTTTTTTTCTTTAAATA  550

seq1  CTCTTGAGGTTTTTTTTTTTTTTCTTTAAATGCTCTTGAGTGTTTCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGGTTTTTTTTTTTTTTCTTTAAATGCTCTTGAGTGTTTCAAGA  600

seq1  ATATAACTTTATATTTCTCTAGTTATATTTTATTTTTATATTATATGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTTTATATTTCTCTAGTTATATTTTATTTTTATATTATATGATA  650

seq1  GATTACATTAAATTTTAGTATTTTGATGATGATACTTAGAATAAGACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACATTAAATTTTAGTATTTTGATGATGATACTTAGAATAAGACATT  700

seq1  CTTGGATATGGCATATGATGCTTTTTAATTCAATTTTGTTGAATTTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATATGGCATATGATGCTTTTTAATTCAATTTTGTTGAATTTAATC  750

seq1  TGGTAATTTTTCTAGGAACTCATTTTGTTTAGTCATTCTAGGGAAGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTTTTCTAGGAACTCATTTTGTTTAGTCATTCTAGGGAAGTTTA  800

seq1  TAACTCATCAAGATACAATTGATAAAGAGTGTGTATGTGTGAAATTAAAG  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAACTCATCAAGATACATTTGATAAAGAGTGTGTATGTGTGAAATTAAAG  850

seq1  TATGTCACCTGAAGCTAAGAAATGGCCTCATGTATATTAATAATATTACC  900
      ||||||||||||||||||||||| | ||||||||||||||||||| ||||
seq2  TATGTCACCTGAAGCTAAGAAATTGGCTCATGTATATTAATAATA-TACC  899

seq1  ATAATAGTAATGATAGCTTA-TGC-TGTTGAGCTA-TTTATTCCA  942
      |||||||||||||||||||| ||| |||||||||| |||||||||
seq2  ATAATAGTAATGATAGCTTATTGCTTGTTGAGCTATTTTATTCCA  944

seq1: chr5_14713053_14713694
seq2: B6Ng01-241J24.g_68_710 (reverse)

seq1  GTGTCACC-TTATCAGACTCAACCAACCTTCCAAGCTGTGGCCACCATGT  49
      ||||||||  ||||||| |||||||||||| |||||||||||||||||||
seq2  GTGTCACCAGTATCAGAATCAACCAACCTTTCAAGCTGTGGCCACCATGT  50

seq1  CCTTCACACCCCAGGCTCAACCTACCCCAACTCCACAGCCATCCTATCAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACACCCCAGGCTCAACCTACCCCAACTCCACAGCCATCCTATCAA  100

seq1  TTACCATCACAGATGATGGTGATACAACAAAAGCCTCGGCAAACCACATT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATCACAGATGATGGTGATACAACAAAAGCCTCGGCAAACCACATT  150

seq1  GTATTTGGAGCCTAAGATAACTTCTACCTATGAAGTGATTCGCAACCAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGAGCCTAAGATAACTTCTACCTATGAAGTGATTCGCAACCAAC  200

seq1  CCCTGATGATTGCTCCAGTTTCTACTGATAATACGTATGCTGTTTCCCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATGATTGCTCCAGTTTCTACTGATAATACGTATGCTGTTTCCCAT  250

seq1  CTCGGGAGTAAGTACAATAGTTTAGACTTGAGAATAGGTTTGGAGGAAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGAGTAAGTACAATAGTTTAGACTTGAGAATAGGTTTGGAGGAAAG  300

seq1  AAGCAGTATGGCAAGCAGTCCAATATCAAGCATATCTGCAGACTCCTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTATGGCAAGCAGTCCAATATCAAGCATATCTGCAGACTCCTTCT  350

seq1  ATGCAGACATTGACCACCATACTTCAAGGAATTATGTCCTAATAGATGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACATTGACCACCATACTTCAAGGAATTATGTCCTAATAGATGAC  400

seq1  ATTGGAGACATTACCAAAGGGACAGCAGCTTTGAGCTCTGCATTTAGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGACATTACCAAAGGGACAGCAGCTTTGAGCTCTGCATTTAGTCT  450

seq1  CCATGAAAAGGATCTGTCCAAAACAGATCGTCTCCTTAGAACCACTGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAAAGGATCTGTCCAAAACAGATCGTCTCCTTAGAACCACTGAGA  500

seq1  CACGGAGGTCTCAAGAAGTGACAGACTTCCTAGCGCCTTTGCAGACTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGGTCTCAAGAAGTGACAGACTTCCTAGCGCCTTTGCAGACTTCC  550

seq1  TCCAGACTGCATAGCTATGTGAAGGCAGAGGAGGATTCGATGGAGGATCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTGCATAGCTATGTGAAGGCAGAGGAGGATTCGATGGAGGATCC  600

seq1  TTATGAGTTAAAGCTTCTGAAACATCAGATTAAGCAAGAATTC  642
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGTTAAAGCTTCTGAAACATCAGATTAAGCAAGAATTC  643