BAC Information

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BAC

Clone NameB6Ng01-241K03
Chromosome5 (Build37)
Map Location 68,580,116 - 68,744,476
singlet/doubletdoublet
Overlap genenone
Upstream geneTmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
Downstream geneLOC666996, Kctd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241K03.bB6Ng01-241K03.g
ACCGA051496GA051497
length1,113782
definitionB6Ng01-241K03.b B6Ng01-241K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,580,116 - 68,581,241)(68,743,695 - 68,744,476)
sequence
gaattcaaagactatgcaaatttgagcctgatgaactaatgaagtgtgat
taagacttattgccattggccacttattgggaggcttttcttagttatac
atgtgctctccaaggctatttatcaactgtcgaatttcatacaccatgca
gacacttctgtctcattgcacagcccactaattgccttatttattgtatt
tgatttacttttacgatgcctatttctcccattgctccaatgtgaattta
atataaattcaatatctaaggcaaatctaccaaccaaaaccaaatatgat
gaaatccaagatttacaaagaatgtcaggaagatgagttatgctttgtac
tgtaaagatacagtcaccaaggagtagtgaggttttgaaggcaaagatgt
tttaggttttaaaatgaatacattttcatagaggatctcttctaaagtgg
aacagaagacagaaagttagctgttttaatagtagatgtttattatgtct
aaatattagtctttgattttgactttttcttggagacaatcttgttctat
ggccaaagctggcctagcacccttgattctccagtctccacctcctggat
tcagggattgcagacatgacacaatacctagtcttcacctgcctagtctc
aatcagtcttcacaatgtatttctaatcaccaccacatgttatttctaaa
acattctgggtattttaaagagaaacaacatgctcaaaatatagtatact
cttctcaaaaacagtcatcaccaacagatggtagaaatttacactttttc
atgggaagtggaccttagatgcatttagcagtgaaatttccagacaagtt
tttaaaataactttaagtagcagaggagggggctggcaagatggcttggc
aagtaagagtactgactcttctttcgaagctctgagttcaaatcccagca
ccacatggtggctcacacacctgtatgagatctgatgccctcttctggtg
tgcctgaagacagcatatattataaatctttggggctagccagttggggc
tgatggagtgagcagaagatctaaatcattcccaacatcacatgaaaggc
tccaacatctgta

gaattccatcttcactataagccaaagaaatccaaaggagtattattatt
attattattattattattattatcaaatatatatacttatttatttagaa
attgctttccaatgtttacttctgtgtgttctaacttttatctccatgat
ccctttactaatgtaaatactacaagttttttcattatattaattttaaa
tatgtagaaaaccaaaatgttatacactgatgagactgcacaaagtacat
tctctagccaactttggggattttaggatgcctagtaatgatacagccta
atttgctgaaatgtataactaaagtcaaaggtaactttaggcaatgccag
gaaaatgtctatgtttatctttcacatgaatttagacatatagtatttcc
cctgcaggcagataagtcttaactcaaatgtctttcaggtgcacttttaa
aaccttaactctgagcttttaaaaacctcaagtccctgatacagaatttt
ctcttcttagaataagctctttttcttctttaatttttgtaatcttggca
aaaaaatgattttttaaaatgtcccctgaagaaaaataagagtcctgtgt
tattctaatgatgctcccctcacatcagaacacactcttgaaagaaaaat
tttaaaaagggggcagtttccccaccgtgcaggaagatgggatgaactat
tgaacctccctggaagtctaggggttaagatctccatatctctctctctc
gctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68580116_68581241
seq2: B6Ng01-241K03.b_45_1157

seq1  GAATTCAAAGACTATGCAAATTTGAGCCTGATGAACTAATGAAGTGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGACTATGCAAATTTGAGCCTGATGAACTAATGAAGTGTGAT  50

seq1  TAAGACTTATTGCCATTGGCCACTTATTGGGAGGCTTTTCTTAGTTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTATTGCCATTGGCCACTTATTGGGAGGCTTTTCTTAGTTATAC  100

seq1  ATGTGCTCTCCAAGGCTATTTATCAACTGTCGAATTTCATACACCATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTCTCCAAGGCTATTTATCAACTGTCGAATTTCATACACCATGCA  150

seq1  GACACTTCTGTCTCATTGCACAGCCCACTAATTGCCTTATTTATTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCTGTCTCATTGCACAGCCCACTAATTGCCTTATTTATTGTATT  200

seq1  TGATTTACTTTTACGATGCCTATTTCTCCCATTGCTCCAATGTGAATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTACTTTTACGATGCCTATTTCTCCCATTGCTCCAATGTGAATTTA  250

seq1  ATATAAATTCAATATCTAAGGCAAATCTACCAACCAAAACCAAATATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATTCAATATCTAAGGCAAATCTACCAACCAAAACCAAATATGAT  300

seq1  GAAATCCAAGATTTACAAAGAATGTCAGGAAGATGAGTTATGCTTTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAAGATTTACAAAGAATGTCAGGAAGATGAGTTATGCTTTGTAC  350

seq1  TGTAAAGATACAGTCACCAAGGAGTAGTGAGGTTTTGAAGGCAAAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGATACAGTCACCAAGGAGTAGTGAGGTTTTGAAGGCAAAGATGT  400

seq1  TTTAGGTTTTAAAATGAATACATTTTCATAGAGGATCTCTTCTAAAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTTTAAAATGAATACATTTTCATAGAGGATCTCTTCTAAAGTGG  450

seq1  AACAGAAGACAGAAAGTTAGCTGTTTTAATAGTAGATGTTTATTATGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGACAGAAAGTTAGCTGTTTTAATAGTAGATGTTTATTATGTCT  500

seq1  AAATATTAGTCTTTGATTTTGACTTTTTCTTGGAGACAATCTTGTTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAGTCTTTGATTTTGACTTTTTCTTGGAGACAATCTTGTTCTAT  550

seq1  GGCCAAAGCTGGCCTAGCACCCTTGATTCTCCAGTCTCCACCTCCTGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAGCTGGCCTAGCACCCTTGATTCTCCAGTCTCCACCTCCTGGAT  600

seq1  TCAGGGATTGCAGACATGACACAATACCTAGTCTTCACCTGCCTAGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATTGCAGACATGACACAATACCTAGTCTTCACCTGCCTAGTCTC  650

seq1  AATCAGTCTTCACAATGTATTTCTAATCACCACCACATGTTATTTCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTCTTCACAATGTATTTCTAATCACCACCACATGTTATTTCTAAA  700

seq1  ACATTCTGGGTATTTTAAAGAGAAACAACATGCTCAAAATATAGTATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGGGTATTTTAAAGAGAAACAACATGCTCAAAATATAGTATACT  750

seq1  CTTCTCAAAAACAGTCATCACCAACAGATGGTAGAAATTTACACTTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAAAACAGTCATCACCAACAGATGGTAGAAATTTACACTTTTTC  800

seq1  ATGGGAAGTGGACCTTAGATGCATTTAGCAGTGAAATTTCCAGACAAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGTGGACCTTAGATGCATTTAGCAGTGAAATTTCCAGACAAGTT  850

seq1  TTTAAAATAACTTTAAGTAGCAGAGGAGGGGGCTGGCAAGATGGCTTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATAACTTTAAGTAGCAGAGGAGGGGGCTGGCAAGATGGCTTGGC  900

seq1  AAGTAAGAGTACTGACTCTTCTTTCGAAGGCTCTGAGTTCAAATCCCAGC  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGTAAGAGTACTGACTCTTCTTTCGAA-GCTCTGAGTTCAAATCCCAGC  949

seq1  AACCACATGGTGGCTCACAACCACCTGTAATGAGATCTGATGCCCTCTTC  1000
       ||||||||||||||||||  ||||||| |||||||||||||||||||||
seq2  -ACCACATGGTGGCTCACA--CACCTGT-ATGAGATCTGATGCCCTCTTC  995

seq1  TGGTGTGCCTGAAGACAGCAATTATAATAATAAATCTTTGGGCCTAAGCA  1050
      ||||||||||||||||||||  ||| || ||||||||||||| |||  ||
seq2  TGGTGTGCCTGAAGACAGCA--TAT-ATTATAAATCTTTGGGGCTAGCCA  1042

seq1  AGTGGGGCTGAATGGAGTGAGCAG-AGATCCTAAATTCAATTCCCAACAA  1099
        |||||||| ||||||||||||| |||| ||||||   ||||||||| |
seq2  GTTGGGGCTG-ATGGAGTGAGCAGAAGAT-CTAAAT--CATTCCCAAC-A  1087

seq1  TCACATG-AAGGCTCACAACCATCTGTA  1126
      ||||||| ||||||| ||| ||||||||
seq2  TCACATGAAAGGCTC-CAA-CATCTGTA  1113


seq1: chr5_68743695_68744476
seq2: B6Ng01-241K03.g_65_846 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGATATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGATATGGA  50

seq1  GATCTTAACCCCTAGACTTCCAGGGAGGTTCAATAGTTCATCCCATCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAACCCCTAGACTTCCAGGGAGGTTCAATAGTTCATCCCATCTTC  100

seq1  CTGCACGGTGGGGAAACTGCCCCCTTTTTAAAATTTTTCTTTCAAGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACGGTGGGGAAACTGCCCCCTTTTTAAAATTTTTCTTTCAAGAGTG  150

seq1  TGTTCTGATGTGAGGGGAGCATCATTAGAATAACACAGGACTCTTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGATGTGAGGGGAGCATCATTAGAATAACACAGGACTCTTATTTT  200

seq1  TCTTCAGGGGACATTTTAAAAAATCATTTTTTTGCCAAGATTACAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGGGACATTTTAAAAAATCATTTTTTTGCCAAGATTACAAAAAT  250

seq1  TAAAGAAGAAAAAGAGCTTATTCTAAGAAGAGAAAATTCTGTATCAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGAAAAAGAGCTTATTCTAAGAAGAGAAAATTCTGTATCAGGGA  300

seq1  CTTGAGGTTTTTAAAAGCTCAGAGTTAAGGTTTTAAAAGTGCACCTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGTTTTTAAAAGCTCAGAGTTAAGGTTTTAAAAGTGCACCTGAAA  350

seq1  GACATTTGAGTTAAGACTTATCTGCCTGCAGGGGAAATACTATATGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGAGTTAAGACTTATCTGCCTGCAGGGGAAATACTATATGTCTA  400

seq1  AATTCATGTGAAAGATAAACATAGACATTTTCCTGGCATTGCCTAAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGTGAAAGATAAACATAGACATTTTCCTGGCATTGCCTAAAGTT  450

seq1  ACCTTTGACTTTAGTTATACATTTCAGCAAATTAGGCTGTATCATTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGACTTTAGTTATACATTTCAGCAAATTAGGCTGTATCATTACTA  500

seq1  GGCATCCTAAAATCCCCAAAGTTGGCTAGAGAATGTACTTTGTGCAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCTAAAATCCCCAAAGTTGGCTAGAGAATGTACTTTGTGCAGTCT  550

seq1  CATCAGTGTATAACATTTTGGTTTTCTACATATTTAAAATTAATATAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGTATAACATTTTGGTTTTCTACATATTTAAAATTAATATAATG  600

seq1  AAAAAACTTGTAGTATTTACATTAGTAAAGGGATCATGGAGATAAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTGTAGTATTTACATTAGTAAAGGGATCATGGAGATAAAAGTT  650

seq1  AGAACACACAGAAGTAAACATTGGAAAGCAATTTCTAAATAAATAAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACACAGAAGTAAACATTGGAAAGCAATTTCTAAATAAATAAGTAT  700

seq1  ATATATTTGATAATAATAATAATAATAATAATAATAATAATACTCCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGATAATAATAATAATAATAATAATAATAATAATACTCCTTTG  750

seq1  GATTTCTTTGGCTTATAGTGAAGATGGAATTC  782
      ||||||||||||||||||||||||||||||||
seq2  GATTTCTTTGGCTTATAGTGAAGATGGAATTC  782


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