BAC Information

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BAC

Clone NameB6Ng01-241K12
Chromosome5 (Build37)
Map Location 100,369,250 - 100,482,730
singlet/doubletdoublet
Overlap geneLOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1
Upstream genePrkg2, LOC100041680, Rasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763
Downstream geneBC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241K12.bB6Ng01-241K12.g
ACCGA051514GA051515
length5061,115
definitionB6Ng01-241K12.b B6Ng01-241K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,369,250 - 100,369,760)(100,481,618 - 100,482,730)
sequence
agtgggtaacaggagggcaagtgttagagaggggtctgtggtaagtcggt
cgatgtgaaagaggcgaggtcaagagaaggccgtggatgtattagttctt
tgtttgtctatttgtttgtttgtttgtttgtttgtttgttttgattgagg
tgtgtggggtgaactgttcagtacagtcagcccacccacaggtgtccatg
tgcctctccatgccaggcatctggagtggtgctgtggccatacctcacat
ataccttcagggcagcatggcaaaagagaaagagaacaagaaaccagaca
agggactaaagcccgcagcacatgcggcatttctgcccttcagccaaatc
aggagacgtttccagcttctctccaaggacaggtgtgtctaaaacagcct
gagagtgcctgcatcctcttcacagcatcgatgtaaacaggactcagggt
atcagctgtaacaaatgttccacccctgagctgtgtggcaaggggggggg
gggact
gaattccacacccctaagcccctcaccccataaaagcccctggctttcga
gcctcgtggccgacatccgttatctcctgtgtgggatgcatgtcgccccg
gagctccgtaattaaacgtcctcatgtaattacagcgagtgggtcctcgt
gtttctttgggtgctctcacactcccgagactagagtgggggtccccgaa
agggggtcttacaatagttaatagaccaatgtgaacaaatgtcatctcag
cggtttgggtacataattagaaactcaggtgggtgtacatgcgtgctgag
gtgtgaaccagggccttctacatactaagaaaacgccccactagagagaa
tgcccacgtctgagaaattttaaaatgtatctaaagccaaaatctaagta
caactggaaaatgaaaatcaccaaggtcttctaacatcttctgtttacat
cctcaaaaccccttatccacacttcacctgctcaacaaatcccttgtcca
cacgtcacctgttcaacaatgacaaagaagctgaccaatcgcttggacgg
tctcaccaggcgtgccagtgagagcagaagcacacaaacagcccgatggg
cacatcctccatccagcacacgtggcagagatgccctgacggagcgcaga
aactcctcttgacttgaacaaggaaagaaagagctgagcaccagactctc
cctgcgagctccttttatactgacactcttcctacctactgggtagtcca
ggctcccttacactcctccttctcctcacaccctcactacaccccacccc
tgcataagctccatggtaggaaagcaaactggctctcctgacaacactgc
ctgacgagatgccacatatagccactcctctactagcaatggacctaaaa
agctcaagcaatgtttactgcagcactgggtaatacagcagagggccctg
gggggagtcgagaccttcagcagcatcagcaactatgagggtggtgggtg
gtgtaactctagcactcgggagctggagagaggagaacatcgcagctgca
ccaccggacctgatcaaattcaaaaacacgcatacaagtcagtgtgataa
agtcaccttcatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_100369250_100369760
seq2: B6Ng01-241K12.b_43_553

seq1  GAATTCAGTGGGTAACAGGAGGGCAAGTGTTAGAGAGGGGTCTGTGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGGTAACAGGAGGGCAAGTGTTAGAGAGGGGTCTGTGGTAA  50

seq1  GTCGGTCGATGTGAAAGAGGCGAGGTCAAGAGAAGGCCGTGGATGTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTCGATGTGAAAGAGGCGAGGTCAAGAGAAGGCCGTGGATGTATTA  100

seq1  GTTCTTTGTTTGTCTATTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGTTTGTCTATTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGA  150

seq1  TTGAGGTGTGTGGGGTGAACTGTTCAGTACAGTCAGCCCACCCACAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGTGTGGGGTGAACTGTTCAGTACAGTCAGCCCACCCACAGGTG  200

seq1  TCCATGTGCCTCTCCATGCCAGGCATCTGGAGTGGTGCTGTGGCCATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTGCCTCTCCATGCCAGGCATCTGGAGTGGTGCTGTGGCCATACC  250

seq1  TCACATATACCTTCAGGGCAGCATGGCAAAAGAGAAAGAGAACAAGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATACCTTCAGGGCAGCATGGCAAAAGAGAAAGAGAACAAGAAAC  300

seq1  CAGACAAGGGACTAAAGCCTGCAGCACATGCGGCATTTCTGCCCTTCAGC  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGACAAGGGACTAAAGCCCGCAGCACATGCGGCATTTCTGCCCTTCAGC  350

seq1  CAAATCAGGAGACGTTTCCAGCTTCTCTCCAAGGACAGGTGTGTCTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGGAGACGTTTCCAGCTTCTCTCCAAGGACAGGTGTGTCTAAAA  400

seq1  CAGCCTGAGAGTGCCTGCATCCTCTTCACAGCATCGATGTAAACAGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAGAGTGCCTGCATCCTCTTCACAGCATCGATGTAAACAGGACT  450

seq1  CAGGGTATCAGCTGTAACAAATGTTCCACCCCTGAGCTGTGTGGCAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATCAGCTGTAACAAATGTTCCACCCCTGAGCTGTGTGGCAAGGG  500

seq1  GGGGGGGGGAC  511
      |||||||||||
seq2  GGGGGGGGGAC  511

seq1: chr5_100481618_100482730
seq2: B6Ng01-241K12.g_63_1177 (reverse)

seq1  CTGATGAAGGTGACTTTATCACACTGACTTGTATGCCGTG-TTTTGATTT  49
      ||||||||||||||||||||||||||||||||||| |||| |||||| ||
seq2  CTGATGAAGGTGACTTTATCACACTGACTTGTATG-CGTGTTTTTGAATT  49

seq1  TGATTCAGGGTCGGT-GTGCAGCTGCCGATGTTCCTCCTCTCTCCAGCTC  98
      ||| |||||  |||| ||||||||| ||||||| ||||||||||||||||
seq2  TGA-TCAGGTCCGGTGGTGCAGCTG-CGATGTT-CTCCTCTCTCCAGCTC  96

seq1  CCGAGTGCTAGAGTTACA-CACCCACCACCCTCATAGTTGCTGATGCTGC  147
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCGAGTGCTAGAGTTACACCACCCACCACCCTCATAGTTGCTGATGCTGC  146

seq1  TGAAGGTCTCGACTCCCCC--AGGCCCTCTGCTGTATTA-CCAGTGCTGC  194
      |||||||||||||||||||   ||||||||||||||||| ||||||||||
seq2  TGAAGGTCTCGACTCCCCCCAGGGCCCTCTGCTGTATTACCCAGTGCTGC  196

seq1  AGTAAACATTGCTTGAGCTTTTTAGGTCCATTGCTAGTAGAGGAGTGGCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACATTGCTTGAGCTTTTTAGGTCCATTGCTAGTAGAGGAGTGGCT  246

seq1  ATATGTGGCATCTCGTCAGGCAGTGTTGTCAGGAGAGCCAGTTTGCTTTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGCATCTCGTCAGGCAGTGTTGTCAGGAGAGCCAGTTTGCTTTC  296

seq1  CTACCATGGAGCTTATGCAGGGGTGGGGTGTAGTGAGGGTGTGAGGAGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATGGAGCTTATGCAGGGGTGGGGTGTAGTGAGGGTGTGAGGAGAA  346

seq1  GGAGGAGTGTAAGGGAGCCTGGACTACCCAGTAGGTAGGAAGAGTGTCAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGTGTAAGGGAGCCTGGACTACCCAGTAGGTAGGAAGAGTGTCAG  396

seq1  TATAAAAGGAGCTCGCAGGGAGAGTCTGGTGCTCAGCTCTTTCTTTCCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGGAGCTCGCAGGGAGAGTCTGGTGCTCAGCTCTTTCTTTCCTT  446

seq1  GTTCAAGTCAAGAGGAGTTTCTGCGCTCCGTCAGGGCATCTCTGCCACGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGTCAAGAGGAGTTTCTGCGCTCCGTCAGGGCATCTCTGCCACGT  496

seq1  GTGCTGGATGGAGGATGTGCCCATCGGGCTGTTTGTGTGCTTCTGCTCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGATGGAGGATGTGCCCATCGGGCTGTTTGTGTGCTTCTGCTCTC  546

seq1  ACTGGCACGCCTGGTGAGACCGTCCAAGCGATTGGTCAGCTTCTTTGTCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCACGCCTGGTGAGACCGTCCAAGCGATTGGTCAGCTTCTTTGTCA  596

seq1  TTGTTGAACAGGTGACGTGTGGACAAGGGATTTGTTGAGCAGGTGAAGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAACAGGTGACGTGTGGACAAGGGATTTGTTGAGCAGGTGAAGTG  646

seq1  TGGATAAGGGGTTTTGAGGATGTAAACAGAAGATGTTAGAAGACCTTGGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGGGGTTTTGAGGATGTAAACAGAAGATGTTAGAAGACCTTGGT  696

seq1  GATTTTCATTTTCCAGTTGTACTTAGATTTTGGCTTTAGATACATTTTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCATTTTCCAGTTGTACTTAGATTTTGGCTTTAGATACATTTTAA  746

seq1  AATTTCTCAGACGTGGGCATTCTCTCTAGTGGGGCGTTTTCTTAGTATGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCAGACGTGGGCATTCTCTCTAGTGGGGCGTTTTCTTAGTATGT  796

seq1  AGAAGGCCCTGGTTCACACCTCAGCACGCATGTACACCCACCTGAGTTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCCCTGGTTCACACCTCAGCACGCATGTACACCCACCTGAGTTTC  846

seq1  TAATTATGTACCCAAACCGCTGAGATGACATTTGTTCACATTGGTCTATT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATGTACCCAAACCGCTGAGATGACATTTGTTCACATTGGTCTATT  896

seq1  AACTATTGTAAGACCCCCTTTCGGGGACCCCCACTCTAGTCTCGGGAGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTGTAAGACCCCCTTTCGGGGACCCCCACTCTAGTCTCGGGAGTG  946

seq1  TGAGAGCACCCAAAGAAACACGAGGACCCACTCGCTGTAATTACATGAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCACCCAAAGAAACACGAGGACCCACTCGCTGTAATTACATGAGG  996

seq1  ACGTTTAATTACGGAGCTCCGGGGCGACATGCATCCCACACAGGAGATAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTAATTACGGAGCTCCGGGGCGACATGCATCCCACACAGGAGATAA  1046

seq1  CGGATGTCGGCCACGAGGCTCGAAAGCCAGGGGCTTTTATGGGGTGAGGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGTCGGCCACGAGGCTCGAAAGCCAGGGGCTTTTATGGGGTGAGGG  1096

seq1  GCTTAGGGGTGTGGAATTC  1113
      |||||||||||||||||||
seq2  GCTTAGGGGTGTGGAATTC  1115