BAC Information

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BAC

Clone NameB6Ng01-241M13
Chromosome5 (Build37)
Map Location 82,815,553 - 82,929,186
singlet/doubletdoublet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241M13.bB6Ng01-241M13.g
ACCGA051611GA051612
length1,2331,077
definitionB6Ng01-241M13.b B6Ng01-241M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,927,975 - 82,929,186)(82,815,553 - 82,816,631)
sequence
gaattcattgtaactagatactcatttttttgaaataccgataggatttt
gtttataaaaccaggtttatatcaggagtaaggatgactacattgtggtc
atagtaaatcatttgtataaaataatgacaatgaaatgtaacttacttat
gaccttgagtaaaccattttttttttctctctggaaatagagccggttta
catacatttcaaatttgatataaatatatagacatgaagactgaactatt
agtctgttttcagtgttttataaaatgtatattcattaagagcggtgtag
taatggatggcagttagtgtataggaatgactttaatcatagaaatgttt
aagtatagcaaatatatttgtgaacaagatcaaaggattttctcagaaga
tcatcacctgatatatttttagacttcattagacacacaatattaagtct
ttctcttctaaataatgatatggtcttacagataattgatgtttcaaact
ctaagaagaatctgataagactcagtaaattataactgacatcttcttaa
tatgaaaagacaattagcgaaaaggaattcaaatacctaactcactagaa
tttaattgaatataaagaatcaattagtctatattttacatggatcaggc
caataaaaatgctgaaagacatagaggtaacttctaggaaactgaacaat
aactgtcttagatttccactcatttttttcttccaggagacaggtgacag
gtacatacacacacacaaacacacacacacacaagttaaagaggaaaatt
atagatttaagaaaagagagaaaattataggaccactgaaaaatatgtat
ttgttttaacatacctttgcctttcgatcaatacatttttttggcttgaa
aacagtatgcttttgttgtataattttaattgataaataataactataca
tgtttgtggaatatcatgtgatgattaatatgtgaatgccatgcagaaat
ttataatacatgttataatataagaacatgcaaatataacatatattttt
aaataacaatttattcaataacatatttttatcattgattgattgttttt
gtttaaaagcaattacaaattatagtctctaacaaatttgggacttgttt
aataaaaatgggtaaactataggcacatctacattaatgtatcactaagc
ctatttctccccatggcaaccttgtgaaacttt

gaattcttcaggggaatgagctgttgaagaagttagtactttattatcca
gtctgctttcaatagtaccaccagctggaaacaaacaaacaagcaaacaa
aaattaacatatgaacttttttagaaggatgcatgtagatataactgttt
gtgcaaaccctaacactgtgaaaattgaagatattctgcttataatgctt
gtatctaatgcttactgcttataattaccctactgaatgtctatcaacaa
tcatcgattaattaccaaaatacataactttcttgttgattgtaacttct
catactggaaaagtaatagtatatgaagtccaggaggccatttagaaata
ctaaaatgaatataatgtgtttcagattggcaggagaatagacataggaa
agaaaaattgatgttaatatgtgtaagaagacagacagtagggaatgaat
gaccatcggtggattccaattggtctcatatacagaacaagcaatgctga
agtgaatcccttggtatatgaatgtagataaaaagagtcctatgtagatg
gcagttaactgtcaggtactctttgaccctttagctctatcctaggatta
ctagtctaacttcattcttaggggtaccttaccacttgtccctggtccaa
ctctttgctctgggatacaagaacctttacacttgggtaagtgtcctggt
acttagaaccatatatgatacaagcacagctttcaatttagggatttagg
tactgtgacttcatgccatttccgcagggcatgtgaggaaaggcacatat
tgttaccaaatacttaatttctgagactgagtatgccacatttatccaag
cagttttgtggcagaatggagaagcaaaactgtacctttgaaaagtaatt
ttttttaaatgtaatttcaggtattgctttgcaaaattataggacaaaag
tctttgaaagaaagctgccaaagagaactgcagaaaatatggggttttgt
gtgtttattatggttattttatcttatccagacacagtattttaaaataa
gaaggttttatggttcagaaaaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82927975_82929186
seq2: B6Ng01-241M13.b_45_1277 (reverse)

seq1  ----------AAAGTTTCCAT-GGGAGGAATAGGTTTAGTGATTTACTAT  39
                || ||| |||| ||||| |||||| |||||||  |||  |
seq2  AAAGTTTCACAAGGTTGCCATGGGGAGAAATAGGCTTAGTGA--TACATT  48

seq1  AATGTATGA--TGGCTATAG-TTACCCATTTTTATTATAC-AGTCCAAAA  85
      |||||| ||  || |||||| |||||||||||||||| || ||||| |||
seq2  AATGTA-GATGTGCCTATAGTTTACCCATTTTTATTAAACAAGTCCCAAA  97

seq1  TTGTTAAAAGACTAT-ATTTG-AAATGCTTTTAAAACAAAACAATCAATC  133
      ||  | | ||||||| ||||| || ||||||||||  |||||||||||||
seq2  TTTGTTAGAGACTATAATTTGTAATTGCTTTTAAACAAAAACAATCAATC  147

seq1  AATGA-ATACATATG-TATGATATATTTGTTTATTT--ATATATATGTTA  179
      ||||| | | ||||| |||   |||  |  ||||||  | ||||||||||
seq2  AATGATAAAAATATGTTATTGAATAAATTGTTATTTAAAAATATATGTTA  197

seq1  TATATGCATG-TCTTATA-TAT-ACATGTATTATAAATTTCTGCATGGCA  226
      ||| |||||| ||||||| ||| |||||||||||||||||||||||||||
seq2  TATTTGCATGTTCTTATATTATAACATGTATTATAAATTTCTGCATGGCA  247

seq1  TTCACATATTAATCATCACATGATATTCCACAAACATGTATAGTTATTAT  276
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATATTAATCATCACATGATATTCCACAAACATGTATAGTTATTAT  297

seq1  TTATCAATTAAAATTATACAACAAAAGCATACTGTTTTCAAGCCAAAAAA  326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATTAAAATTATACAACAAAAGCATACTGTTTTCAAGCCAAAAAA  347

seq1  ATGTATTGATCGAAAGGCAAAGGTATGTTAAAACAAATACATATTTTTCA  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTGATCGAAAGGCAAAGGTATGTTAAAACAAATACATATTTTTCA  397

seq1  GTGGTCCTATAATTTTCTCTCTTTTCTTAAATCTATAATTTTCCTCTTTA  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCTATAATTTTCTCTCTTTTCTTAAATCTATAATTTTCCTCTTTA  447

seq1  ACTTGTGTGTGTGTGTGTTTGTGTGTGTGTATGTACCTGTCACCTGTCTC  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTGTGTGTGTGTTTGTGTGTGTGTATGTACCTGTCACCTGTCTC  497

seq1  CTGGAAGAAAAAAATGAGTGGAAATCTAAGACAGTTATTGTTCAGTTTCC  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAAAAAAATGAGTGGAAATCTAAGACAGTTATTGTTCAGTTTCC  547

seq1  TAGAAGTTACCTCTATGTCTTTCAGCATTTTTATTGGCCTGATCCATGTA  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTACCTCTATGTCTTTCAGCATTTTTATTGGCCTGATCCATGTA  597

seq1  AAATATAGACTAATTGATTCTTTATATTCAATTAAATTCTAGTGAGTTAG  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGACTAATTGATTCTTTATATTCAATTAAATTCTAGTGAGTTAG  647

seq1  GTATTTGAATTCCTTTTCGCTAATTGTCTTTTCATATTAAGAAGATGTCA  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGAATTCCTTTTCGCTAATTGTCTTTTCATATTAAGAAGATGTCA  697

seq1  GTTATAATTTACTGAGTCTTATCAGATTCTTCTTAGAGTTTGAAACATCA  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATTTACTGAGTCTTATCAGATTCTTCTTAGAGTTTGAAACATCA  747

seq1  ATTATCTGTAAGACCATATCATTATTTAGAAGAGAAAGACTTAATATTGT  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGTAAGACCATATCATTATTTAGAAGAGAAAGACTTAATATTGT  797

seq1  GTGTCTAATGAAGTCTAAAAATATATCAGGTGATGATCTTCTGAGAAAAT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAATGAAGTCTAAAAATATATCAGGTGATGATCTTCTGAGAAAAT  847

seq1  CCTTTGATCTTGTTCACAAATATATTTGCTATACTTAAACATTTCTATGA  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATCTTGTTCACAAATATATTTGCTATACTTAAACATTTCTATGA  897

seq1  TTAAAGTCATTCCTATACACTAACTGCCATCCATTACTACACCGCTCTTA  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCATTCCTATACACTAACTGCCATCCATTACTACACCGCTCTTA  947

seq1  ATGAATATACATTTTATAAAACACTGAAAACAGACTAATAGTTCAGTCTT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATACATTTTATAAAACACTGAAAACAGACTAATAGTTCAGTCTT  997

seq1  CATGTCTATATATTTATATCAAATTTGAAATGTATGTAAACCGGCTCTAT  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTATATATTTATATCAAATTTGAAATGTATGTAAACCGGCTCTAT  1047

seq1  TTCCAGAGAGAAAAAAAAAATGGTTTACTCAAGGTCATAAGTAAGTTACA  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGAGAAAAAAAAAATGGTTTACTCAAGGTCATAAGTAAGTTACA  1097

seq1  TTTCATTGTCATTATTTTATACAAATGATTTACTATGACCACAATGTAGT  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTCATTATTTTATACAAATGATTTACTATGACCACAATGTAGT  1147

seq1  CATCCTTACTCCTGATATAAACCTGGTTTTATAAACAAAATCCTATCGGT  1176
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTACTCCTGATATAAACCTGGTTTTATAAACAAAATCCTATCGGT  1197

seq1  ATTTCAAAAAAATGAGTATCTAGTTACAATGAATTC  1212
      ||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAAAAATGAGTATCTAGTTACAATGAATTC  1233


seq1: chr5_82815553_82816631
seq2: B6Ng01-241M13.g_66_1142

seq1  GAATTCTTCAGGGGAATGAGCTGTTGAAGAAGTTAGTACTTTATTATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGGGAATGAGCTGTTGAAGAAGTTAGTACTTTATTATCCA  50

seq1  GTCTGCTTTCAATAGTACCACCAGCTGGAAACAAACAAACAAGCAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTTCAATAGTACCACCAGCTGGAAACAAACAAACAAGCAAACAA  100

seq1  AAATTAACATATGAACTTTTTTAGAAGGATGCATGTAGATATAACTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACATATGAACTTTTTTAGAAGGATGCATGTAGATATAACTGTTT  150

seq1  GTGCAAACCCTAACACTGTGAAAATTGAAGATATTCTGCTTATAATGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAACCCTAACACTGTGAAAATTGAAGATATTCTGCTTATAATGCTT  200

seq1  GTATCTAATGCTTACTGCTTATAATTACCCTACTGAATGTCTATCAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAATGCTTACTGCTTATAATTACCCTACTGAATGTCTATCAACAA  250

seq1  TCATCGATTAATTACCAAAATACATAACTTTCTTGTTGATTGTAACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGATTAATTACCAAAATACATAACTTTCTTGTTGATTGTAACTTCT  300

seq1  CATACTGGAAAAGTAATAGTATATGAAGTCCAGGAGGCCATTTAGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGAAAAGTAATAGTATATGAAGTCCAGGAGGCCATTTAGAAATA  350

seq1  CTAAAATGAATATAATGTGTTTCAGATTGGCAGGAGAATAGACATAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGAATATAATGTGTTTCAGATTGGCAGGAGAATAGACATAGGAA  400

seq1  AGAAAAATTGATGTTAATATGTGTAAGAAGACAGACAGTAGGGAATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTGATGTTAATATGTGTAAGAAGACAGACAGTAGGGAATGAAT  450

seq1  GACCATCGGTGGATTCCAATTGGTCTCATATACAGAACAAGCAATGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCGGTGGATTCCAATTGGTCTCATATACAGAACAAGCAATGCTGA  500

seq1  AGTGAATCCCTTGGTATATGAATGTAGATAAAAAGAGTCCTATGTAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATCCCTTGGTATATGAATGTAGATAAAAAGAGTCCTATGTAGATG  550

seq1  GCAGTTAACTGTCAGGTACTCTTTGACCCTTTAGCTCTATCCTAGGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAACTGTCAGGTACTCTTTGACCCTTTAGCTCTATCCTAGGATTA  600

seq1  CTAGTCTAACTTCATTCTTAGGGGTACCTTACCACTTGTCCCTGGTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTAACTTCATTCTTAGGGGTACCTTACCACTTGTCCCTGGTCCAA  650

seq1  CTCTTTGCTCTGGGATACAAGAACCTTTACACTTGGGTAAGTGTCCTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCTCTGGGATACAAGAACCTTTACACTTGGGTAAGTGTCCTGGT  700

seq1  ACTTAGAACCATATATGATACAAGCACAGCTTTCAATTTAGGGATTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAACCATATATGATACAAGCACAGCTTTCAATTTAGGGATTTAGG  750

seq1  TACTGTGACTTCATGCCATTTCCGCAGGGCATGTGAGG-AAGGCACATAT  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACTGTGACTTCATGCCATTTCCGCAGGGCATGTGAGGAAAGGCACATAT  800

seq1  TGTTACCAAATACTTAATTTCTGAGACTGAGTATGCCACATTTATCCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCAAATACTTAATTTCTGAGACTGAGTATGCCACATTTATCCAAG  850

seq1  CAGTTTTGTGGCAGAATGGAGAAGCAAAACTGTACC-TTGAAAAGTAA-T  897
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  CAGTTTTGTGGCAGAATGGAGAAGCAAAACTGTACCTTTGAAAAGTAATT  900

seq1  TTTTTTAAATGTAATTTCAGGTATTGCTTTGCAAAATTATAGGACAAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATGTAATTTCAGGTATTGCTTTGCAAAATTATAGGACAAAAG  950

seq1  TCTTTGAAAAGAAAGCTGCCAAAGAGAACTGCAAGAAAATTATGGGGTTT  997
      |||||| ||||||||||||||||||||||||| |||||| ||||||||||
seq2  TCTTTG-AAAGAAAGCTGCCAAAGAGAACTGC-AGAAAA-TATGGGGTTT  997

seq1  TGTTGTTGTTTATTATTGGTTA-TTTATCTATCCCAGACACAAGTATTTT  1046
      |||   ||||||||| |||||| |||||||   |||||||| ||||||||
seq2  TGT--GTGTTTATTA-TGGTTATTTTATCTTATCCAGACAC-AGTATTTT  1043

seq1  AAAATAAGAA-GTTTTATGTTTCAGAAAAAATTT  1079
      |||||||||| |||||||| ||||||||||||||
seq2  AAAATAAGAAGGTTTTATGGTTCAGAAAAAATTT  1077


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