BAC Information

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BAC

Clone NameB6Ng01-241N20
Chromosome5 (Build37)
Map Location 138,548,226 - 138,686,583
singlet/doubletdoublet
Overlap geneZkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004
Upstream geneTrim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c
Downstream gene0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241N20.bB6Ng01-241N20.g
ACCGA051671GA051672
length1,063759
definitionB6Ng01-241N20.b B6Ng01-241N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,548,226 - 138,549,281)(138,685,825 - 138,686,583)
sequence
gaattccagaagcttgccatggctacagctataggatttgctatcatgag
attcattggcttcttcgtgaaactgatccatatccctattaataacatta
tcatgggtggctgagtcctttttcatcatgggacaagtgaaccagtgagg
gggtgacaagctcatgaaataaaacattgcctggaaaaaaagagagagag
agacttacctggaatccctcagtgaggggtgtggctcagttaagagcatt
tacatagagtaacccatgaaagtgaatgtgagtggccacaggacatggtg
ccaaagcaatagagcatttgctaggataccctattagtgggtgggctgtg
atgtggctccgtgattgcctaccatatgcaagtcccttgggtgcaatctc
cagcactgccctgccctgcccaaaaagagttcttactttctcacgggagg
aagactgtgattaaacagaacattcttgtcctaagaattcgagtgttaag
ggttagggtggttgtgcaagcaaatttttaagttgtatttttataaactt
tcagttaaggattattattaacaaccaggtcaacatgataagcctacctt
tatatagagagttaactcaggcactgtctttttgttcataggctagataa
accatcctgttttatccatccccagcatatactagactaaattagaccca
aagaagaaactttgtatgccagcaggattaaaatcatcgctgttaaaaag
tggaactttgatttgaccagcctctgaagagtccagatgtttagtagatg
ttcaataaataatttttaaatggaatttgttttaaatcctcatttgtttt
ttctacaaaagttccttttagtaaatggaggaaaagtagtttttttttgt
ggttttttttttttccctttgttttccttaaagctaaaggaactctaagc
attatgagaacctaaagttccaaaagagaaattgccagcctgaccaggta
gtgaagctgggcagagtactgccttgcctttaatccagagtcttgtcccc
agtaccattctaa
gaattccagtctcctcctggaggcccacataagagagcctccgtctagct
gccttcagattaacatgtagaactctcagctccttctccagcaccatgtc
tactacctagatactgccaatattcccaccatgacaataatgaactgaac
ctctgaaactgtaagctagctccaattaactatcttttataagagttgct
ttggtcatggtgtctgttcacagcgatgagacaacatctaatcttcctgc
cttcacctctagagtgctgagacttcatatgtgcacctccaaactcaggg
ggtagcactgttcatgtctccacttatagatggggactctgaggacctag
aatattaaggaagtaatttaccatgataaagaacaatgatacgcgtttaa
tcccagcacttgggaggcagaggcaggtggatttctgattttgaggccag
cctggtctacaaagtgagttctaggacagccagagctatacagagaaact
ctgtctcgaaacaaccattaaaaaagagaacaatgatgatgggccaggca
tggtagcccatgcctttgggagacagaaacagccagaggttcatgaatcc
aaggccacccaggtctacctagctcgttccataccagccaaggctacata
gagacatccagtctcaaaacaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagagggagggaggg
agggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138548226_138549281
seq2: B6Ng01-241N20.b_48_1110

seq1  GAATTCCAGAAGCTTGCCATGGCTACAGCTATAGGATTTGCTATCATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGCTTGCCATGGCTACAGCTATAGGATTTGCTATCATGAG  50

seq1  ATTCATTGGCTTCTTCGTGAAACTGATCCATATCCCTATTAATAACATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGGCTTCTTCGTGAAACTGATCCATATCCCTATTAATAACATTA  100

seq1  TCATGGGTGGCTGAGTCCTTTTTCATCATGGGACAAGTGAACCAGTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGTGGCTGAGTCCTTTTTCATCATGGGACAAGTGAACCAGTGAGG  150

seq1  GGGTGACAAGCTCATGAAATAAAACATTGCCTGGAAAAAAAGAGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACAAGCTCATGAAATAAAACATTGCCTGGAAAAAAAGAGAGAGAG  200

seq1  AGACTTACCTGGAATCCCTCAGTGAGGGGTGTGGCTCAGTTAAGAGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTACCTGGAATCCCTCAGTGAGGGGTGTGGCTCAGTTAAGAGCATT  250

seq1  TACATAGAGTAACCCATGAAAGTGAATGTGAGTGGCCACAGGACATGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGTAACCCATGAAAGTGAATGTGAGTGGCCACAGGACATGGTG  300

seq1  CCAAAGCAATAGAGCATTTGCTAGGATACCCTATTAGTGGGTGGGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCAATAGAGCATTTGCTAGGATACCCTATTAGTGGGTGGGCTGTG  350

seq1  ATGTGGCTCCGTGATTGCCTACCATATGCAAGTCCCTTGGGTGCAATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTCCGTGATTGCCTACCATATGCAAGTCCCTTGGGTGCAATCTC  400

seq1  CAGCACTGCCCTGCCCTGCCCAAAAAGAGTTCTTACTTTCTCACGGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGCCCTGCCCTGCCCAAAAAGAGTTCTTACTTTCTCACGGGAGG  450

seq1  AAGACTGTGATTAAACAGAACATTCTTGTCCTAAGAATTCGAGTGTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTGATTAAACAGAACATTCTTGTCCTAAGAATTCGAGTGTTAAG  500

seq1  GGTTAGGGTGGTTGTGCAAGCAAATTTTTAAGTTGTATTTTTATAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGGTGGTTGTGCAAGCAAATTTTTAAGTTGTATTTTTATAAACTT  550

seq1  TCAGTTAAGGATTATTATTAACAACCAGGTCAACATGATAAGCCTACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAGTTAAGGATTATTATTAACAACCAGGTCAACATGATAAGCCTACCTT  600

seq1  TATATAGAGAGTTAACTCAGGCACTGTCTTTTTGTTCATAGGCTAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGAGAGTTAACTCAGGCACTGTCTTTTTGTTCATAGGCTAGATAA  650

seq1  ACCATCCTGTTTTATCCATCCCCAGCATATACTAGAATAAATTAGACCCA  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCATCCTGTTTTATCCATCCCCAGCATATACTAGACTAAATTAGACCCA  700

seq1  AAGAAGAAACTTTGTATGCCAGCAGGATTAAAATCATTGCTGTTAAAAAG  750
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGAAGAAACTTTGTATGCCAGCAGGATTAAAATCATCGCTGTTAAAAAG  750

seq1  TGGAACTTTGATTTGACCAGCCTCTGAAGAGTCCAGATGTTTAGTAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTTTGATTTGACCAGCCTCTGAAGAGTCCAGATGTTTAGTAGATG  800

seq1  TTCAATAAATAATTTTTAAATGGAATTTGTTTTAAATCCTCATTTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAATAATTTTTAAATGGAATTTGTTTTAAATCCTCATTTGTTTT  850

seq1  TTCTACAAAAGTTCCTTTTAGTAAATGGAGGAAAAGTAG-TTTTTTTTGT  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCTACAAAAGTTCCTTTTAGTAAATGGAGGAAAAGTAGTTTTTTTTTGT  900

seq1  GG-TTTTTTTTTTTCCCTTTGTTTTCCTTAAAGCTAAA-GAACTCTAAGC  947
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGTTTTTTTTTTTTCCCTTTGTTTTCCTTAAAGCTAAAGGAACTCTAAGC  950

seq1  ATTATTGAGAA-CTAAAGTTTCAAAAGAGAAA-TGGCAGGCTGAGCAGGT  995
      |||| |||||| |||||||| ||||||||||| || ||| |||| |||||
seq2  ATTA-TGAGAACCTAAAGTTCCAAAAGAGAAATTGCCAGCCTGACCAGGT  999

seq1  AGTGAAG-TTGGCAGAGTACTTGCTTGCC-TTAATCCAGAGTTCTGTCCC  1043
      ||||||| | |||||||||||  |||||| ||||||||||||  ||||||
seq2  AGTGAAGCTGGGCAGAGTACTGCCTTGCCTTTAATCCAGAGTCTTGTCCC  1049

seq1  CAGTACCA-TCTAA  1056
      |||||||| |||||
seq2  CAGTACCATTCTAA  1063

seq1: chr5_138685825_138686583
seq2: B6Ng01-241N20.g_64_822 (reverse)

seq1  TCCCTCCCTCCCTCCCTCCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTCCCTCCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  50

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGTTTTGAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGTTTTGAGACT  100

seq1  GGATGTCTCTATGTAGCCTTGGCTGGTATGGAACGAGCTAGGTAGACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCTCTATGTAGCCTTGGCTGGTATGGAACGAGCTAGGTAGACCTG  150

seq1  GGTGGCCTTGGATTCATGAACCTCTGGCTGTTTCTGTCTCCCAAAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTTGGATTCATGAACCTCTGGCTGTTTCTGTCTCCCAAAGGCAT  200

seq1  GGGCTACCATGCCTGGCCCATCATCATTGTTCTCTTTTTTAATGGTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACCATGCCTGGCCCATCATCATTGTTCTCTTTTTTAATGGTTGTT  250

seq1  TCGAGACAGAGTTTCTCTGTATAGCTCTGGCTGTCCTAGAACTCACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACAGAGTTTCTCTGTATAGCTCTGGCTGTCCTAGAACTCACTTTG  300

seq1  TAGACCAGGCTGGCCTCAAAATCAGAAATCCACCTGCCTCTGCCTCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCAAAATCAGAAATCCACCTGCCTCTGCCTCCCAA  350

seq1  GTGCTGGGATTAAACGCGTATCATTGTTCTTTATCATGGTAAATTACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAACGCGTATCATTGTTCTTTATCATGGTAAATTACTTC  400

seq1  CTTAATATTCTAGGTCCTCAGAGTCCCCATCTATAAGTGGAGACATGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATATTCTAGGTCCTCAGAGTCCCCATCTATAAGTGGAGACATGAAC  450

seq1  AGTGCTACCCCCTGAGTTTGGAGGTGCACATATGAAGTCTCAGCACTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTACCCCCTGAGTTTGGAGGTGCACATATGAAGTCTCAGCACTCTA  500

seq1  GAGGTGAAGGCAGGAAGATTAGATGTTGTCTCATCGCTGTGAACAGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAAGGCAGGAAGATTAGATGTTGTCTCATCGCTGTGAACAGACAC  550

seq1  CATGACCAAAGCAACTCTTATAAAAGATAGTTAATTGGAGCTAGCTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAAAGCAACTCTTATAAAAGATAGTTAATTGGAGCTAGCTTACA  600

seq1  GTTTCAGAGGTTCAGTTCATTATTGTCATGGTGGGAATATTGGCAGTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAGGTTCAGTTCATTATTGTCATGGTGGGAATATTGGCAGTATC  650

seq1  TAGGTAGTAGACATGGTGCTGGAGAAGGAGCTGAGAGTTCTACATGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGTAGACATGGTGCTGGAGAAGGAGCTGAGAGTTCTACATGTTAA  700

seq1  TCTGAAGGCAGCTAGACGGAGGCTCTCTTATGTGGGCCTCCAGGAGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGCAGCTAGACGGAGGCTCTCTTATGTGGGCCTCCAGGAGGAGA  750

seq1  CTGGAATTC  759
      |||||||||
seq2  CTGGAATTC  759