BAC Information

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BAC

Clone NameB6Ng01-242E23
Chromosome5 (Build37)
Map Location 108,665,937 - 108,805,861
singlet/doubletdoublet
Overlap geneDr1, Pigg
Upstream geneTgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614
Downstream genePde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242E23.bB6Ng01-242E23.g
ACCGA051990GA051991
length1,1331,129
definitionB6Ng01-242E23.b B6Ng01-242E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,804,731 - 108,805,861)(108,665,937 - 108,667,059)
sequence
gaattcactagctggtttgagatcagaccaagaatatcctagggactcag
gcaggggccatgtggtagtttgaataagaatgcccccccccacaggctca
tatttctgaatgcttggtcatcagggaatgtttgagaaggattaggaggc
atggacttgttagagtaggtgtggcattgttggaggaaatatctttctct
ctgtctttcagtctcagtctctctgtctctctctgtctctctctctctgt
ttctgtctctctgtctgtctgcatctgtctctgtctctgtctgtctgtct
gtctgtctgtctctgtctgtctctgtctgtctctgtctctctctctttct
ctctctctctccagtaccatgtctgcctgcattctacaatgttccctgct
atgatgatattagactatgctcagaaactctaagcaagcacccaggtaaa
ttttttcctttataagaattgccaatgtcatggtgtctcttcaaagcaac
agcactgtgactaagacaggccatgagggaatatttgtggtttgaactcc
taaaagccttggaaccaaaccctgagcagctctcaccacagactttatca
ctctctaaccaggaacttctctaaggtgacacatctggtcacataatttc
ctaatgttgttctctcacactttgagaaggaaatcagcacagtcggccca
gactccagtacagcaagtctcctgagagcattccaagctatagcccagtg
ggtctcaaccttcctaatgctgtgaccctttagtacagttcttcattatg
tggtgaccccagcagtaaaattatttcattgctacttttataactgtaat
tttgctactgtaatgaattataaatatctcatatgcaggatatcatagat
gaccccccaaaggagtcataacacacagtatgagaaccacaatgatagac
cattatggcgattacttcatagtttacattctttaaactttaatcgagta
aattttgaaactagctacacagtattcatcgaccatctaccttgtgccag
aatgctatttcttggcacatgagaacaataatggacaaccaggcctccca
ctttgttgtccctgagaactcaatggataaata
gaattcttagtccccagttggtggctttgtttgggtaggtataggagatg
tggccttgctggaggaagtatgtcactgtgggaagggtttgacatttcaa
tagccatgtgttgttcggtttgctctctctgctttctgtttgtagtttca
gatgtgagctctcagatgttcctgcccccatgtctacttcttgctgctac
aactccctgccatgatggactctgatctctctgaaacaataagctcagat
aaactcttctatattttgtcttggttttggtgttttatcacagcagtaga
aaagtaactaataagttgggtgtggtggcgcacgtctttaataccagcac
tcgggaggcagaggcaggtggatttctgagttcgaggccagcctggtcta
cagagtgagtttcaggacagccagggctacacagagaaaccctgtctcag
aaaaaaaaaaaaagaaaagaaaaaaagagtaactaatacagtagtaatgg
accaatatgaatttttagttttaagacaattttatttggggctgaagaga
tggctcagcggttaagagcactcactgactgctcttccagaggtcctgag
ttcaattcccagcaacaaccatatggtggcttaaaaccatctgtaaaggg
atttgatgtcctcttttggtatgtctgaagagagcaacagtgtaaatttt
acacttatgtagaattataaataaacaaacaaacaaatcttttttaaaat
gtttaaatttttttatttttaaattgatggctatcaccagaaaggaataa
agccctatacctattactactcaataatggaaagcaaaatgggttcataa
gctcaaatctgtatgaaattaagcaaagtttgaaagaaaacaaacgtcag
aagtaaagggagatgtttaatcaagctgaaaacatagatgttgcatagaa
acaggaaaattcactttactctgtcatacatcatgttgctggggagtctg
tagcaccatttcagaaagatggtgtgctacattttcttctataacttcca
ccacaagtgggtgacagaacagatttccagaatctcttctgggacaggcc
gaacctagctgaattccaaggcacgccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108804731_108805861
seq2: B6Ng01-242E23.b_46_1178 (reverse)

seq1  TATTTAACCATTGAG-TCTCAGGGAC-ACAAAGGTGGAGGCCTGTTTGTT  48
      |||||| |||||||| |||||||||| ||||||  ||||||||| |||| 
seq2  TATTTATCCATTGAGTTCTCAGGGACAACAAAGTGGGAGGCCTGGTTGTC  50

seq1  CATTTATTGTTCTCA-GTGCCAAG-AATAGCA-TCTGGCACAAGGTAGAT  95
      || |||||||||||| |||||||| ||||||| |||||||||||||||||
seq2  CA-TTATTGTTCTCATGTGCCAAGAAATAGCATTCTGGCACAAGGTAGAT  99

seq1  GGTCGATGAATACTTGTGTAGCTAGTTTTCAAAATTTACTCGATTAAAGT  145
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  GGTCGATGAATAC-TGTGTAGCTAG-TTTCAAAATTTACTCGATTAAAGT  147

seq1  TTAAAGAATGTAAACTATGAAGTAATCGCCATAATGGTCTATCATTGTGG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAATGTAAACTATGAAGTAATCGCCATAATGGTCTATCATTGTGG  197

seq1  TTCTCATACTGTGTGTTATGACTCCTTTGGGGGGTCATCTATGATATCCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATACTGTGTGTTATGACTCCTTTGGGGGGTCATCTATGATATCCT  247

seq1  GCATATGAGATATTTATAATTCATTACAGTAGCAAAATTACAGTTATAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGAGATATTTATAATTCATTACAGTAGCAAAATTACAGTTATAAA  297

seq1  AGTAGCAATGAAATAATTTTACTGCTGGGGTCACCACATAATGAAGAACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAATGAAATAATTTTACTGCTGGGGTCACCACATAATGAAGAACT  347

seq1  GTACTAAAGGGTCACAGCATTAGGAAGGTTGAGACCCACTGGGCTATAGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAAGGGTCACAGCATTAGGAAGGTTGAGACCCACTGGGCTATAGC  397

seq1  TTGGAATGCTCTCAGGAGACTTGCTGTACTGGAGTCTGGGCCGACTGTGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGCTCTCAGGAGACTTGCTGTACTGGAGTCTGGGCCGACTGTGC  447

seq1  TGATTTCCTTCTCAAAGTGTGAGAGAACAACATTAGGAAATTATGTGACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCTTCTCAAAGTGTGAGAGAACAACATTAGGAAATTATGTGACC  497

seq1  AGATGTGTCACCTTAGAGAAGTTCCTGGTTAGAGAGTGATAAAGTCTGTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTCACCTTAGAGAAGTTCCTGGTTAGAGAGTGATAAAGTCTGTG  547

seq1  GTGAGAGCTGCTCAGGGTTTGGTTCCAAGGCTTTTAGGAGTTCAAACCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGCTGCTCAGGGTTTGGTTCCAAGGCTTTTAGGAGTTCAAACCAC  597

seq1  AAATATTCCCTCATGGCCTGTCTTAGTCACAGTGCTGTTGCTTTGAAGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCCCTCATGGCCTGTCTTAGTCACAGTGCTGTTGCTTTGAAGAG  647

seq1  ACACCATGACATTGGCAATTCTTATAAAGGAAAAAATTTACCTGGGTGCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGACATTGGCAATTCTTATAAAGGAAAAAATTTACCTGGGTGCT  697

seq1  TGCTTAGAGTTTCTGAGCATAGTCTAATATCATCATAGCAGGGAACATTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGAGTTTCTGAGCATAGTCTAATATCATCATAGCAGGGAACATTG  747

seq1  TAGAATGCAGGCAGACATGGTACTGGAGAGAGAGAGAGAAAGAGAGAGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGCAGGCAGACATGGTACTGGAGAGAGAGAGAGAAAGAGAGAGAG  797

seq1  ACAGAGACAGACAGAGACAGACAGAGACAGACAGACAGACAGACAGACAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACAGACAGAGACAGACAGAGACAGACAGACAGACAGACAGACAG  847

seq1  AGACAGAGACAGATGCAGACAGACAGAGAGACAGAAACAGAGAGAGAGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGACAGATGCAGACAGACAGAGAGACAGAAACAGAGAGAGAGAG  897

seq1  ACAGAGAGAGACAGAGAGACTGAGACTGAAAGACAGAGAGAAAGATATTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGACAGAGAGACTGAGACTGAAAGACAGAGAGAAAGATATTT  947

seq1  CCTCCAACAATGCCACACCTACTCTAACAAGTCCATGCCTCCTAATCCTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACAATGCCACACCTACTCTAACAAGTCCATGCCTCCTAATCCTT  997

seq1  CTCAAACATTCCCTGATGACCAAGCATTCAGAAATATGAGCCTGTGGGGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACATTCCCTGATGACCAAGCATTCAGAAATATGAGCCTGTGGGGG  1047

seq1  GGGGCATTCTTATTCAAACTACCACATGGCCCCTGCCTGAGTCCCTAGGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATTCTTATTCAAACTACCACATGGCCCCTGCCTGAGTCCCTAGGA  1097

seq1  TATTCTTGGTCTGATCTCAAACCAGCTAGTGAATTC  1131
      ||||||||||||||||||||||||||||||||||||
seq2  TATTCTTGGTCTGATCTCAAACCAGCTAGTGAATTC  1133

seq1: chr5_108665937_108667059
seq2: B6Ng01-242E23.g_65_1193

seq1  GAATTCTTAGTCCCCAGTTGGTGGCTTTGTTTGGGTAGGTATAGGAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTCCCCAGTTGGTGGCTTTGTTTGGGTAGGTATAGGAGATG  50

seq1  TGGCCTTGCTGGAGGAAGTATGTCACTGTGGGAAGGGTTTGACATTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGCTGGAGGAAGTATGTCACTGTGGGAAGGGTTTGACATTTCAA  100

seq1  TAGCCATGTGTTGTTCGGTTTGCTCTCTCTGCTTTCTGTTTGTAGTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATGTGTTGTTCGGTTTGCTCTCTCTGCTTTCTGTTTGTAGTTTCA  150

seq1  GATGTGAGCTCTCAGATGTTCCTGCCCCCATGTCTACTTCTTGCTGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAGCTCTCAGATGTTCCTGCCCCCATGTCTACTTCTTGCTGCTAC  200

seq1  AACTCCCTGCCATGATGGACTCTGATCTCTCTGAAACAATAAGCTCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCTGCCATGATGGACTCTGATCTCTCTGAAACAATAAGCTCAGAT  250

seq1  AAACTCTTCTATATTTTGTCTTGGTTTTGGTGTTTTATCACAGCAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTCTATATTTTGTCTTGGTTTTGGTGTTTTATCACAGCAGTAGA  300

seq1  AAAGTAACTAATAAGTTGGGTGTGGTGGCGCACGTCTTTAATACCAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACTAATAAGTTGGGTGTGGTGGCGCACGTCTTTAATACCAGCAC  350

seq1  TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTA  400

seq1  CAGAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAG  450

seq1  AAAAAAAAAAAAAGAAAAGAAAAAAAGAGTAACTAATACAGTAGTAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGAAAAGAAAAAAAGAGTAACTAATACAGTAGTAATGG  500

seq1  ACCAATATGAATTTTTAGTTTTAAGACAATTTTATTTGGGGCTGAAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATATGAATTTTTAGTTTTAAGACAATTTTATTTGGGGCTGAAGAGA  550

seq1  TGGCTCAGCGGTTAAGAGCACTCACTGACTGCTCTTCCAGAGGTCCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCGGTTAAGAGCACTCACTGACTGCTCTTCCAGAGGTCCTGAG  600

seq1  TTCAATTCCCAGCAACAACCATATGGTGGCTTAAAACCATCTGTAAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCCCAGCAACAACCATATGGTGGCTTAAAACCATCTGTAAAGGG  650

seq1  ATTTGATGTCCTCTTTTGGTATGTCTGAAGAGAGCAACAGTGTAAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGTCCTCTTTTGGTATGTCTGAAGAGAGCAACAGTGTAAATTTT  700

seq1  ACACTTATGTAGAATTATAAATAAACAAACAAACAAATCTTTTTTAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATGTAGAATTATAAATAAACAAACAAACAAATCTTTTTTAAAAT  750

seq1  GTTTAAATTTTTTTATTTTTAAATTGATGGCTATCACCAGAAAGGAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATTTTTTTATTTTTAAATTGATGGCTATCACCAGAAAGGAATAA  800

seq1  AGCCCTATACCTATTACTACTCAATAATGGAAAGCAAAATGGGTTCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTATACCTATTACTACTCAATAATGGAAAGCAAAATGGGTTCATAA  850

seq1  GCTCAAATCTGTATGAAATTAAGCAAAGTTTGAAAGAAAACAAACGTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATCTGTATGAAATTAAGCAAAGTTTGAAAGAAAACAAACGTCAG  900

seq1  AAGT-AAGGGAGATGTTTAATCAAGCTGAAAACATAGATGTTGCAATAGA  949
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGTAAAGGGAGATGTTTAATCAAGCTGAAAACATAGATGTTGC-ATAGA  949

seq1  AACAGGAAAATTCACTTTACTCTGTCATACATCATGTTGCTGGGGAGTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAAATTCACTTTACTCTGTCATACATCATGTTGCTGGGGAGTCT  999

seq1  GTAGCACCCATTTCAGAAAGATGGTGTGGCTACATTT--CTCTATAACTT  1047
      |||||| |||||||||||||||||||| |||||||||   ||||||||||
seq2  GTAGCA-CCATTTCAGAAAGATGGTGT-GCTACATTTTCTTCTATAACTT  1047

seq1  CCACCACAGGTTGGGTGACAG-ACAGA-TTCCAGGATCTC-TCT-GGACA  1093
      |||||||| | |||||||||| ||||| |||||| ||||| ||| |||||
seq2  CCACCACAAG-TGGGTGACAGAACAGATTTCCAGAATCTCTTCTGGGACA  1096

seq1  GCCAGA--CTAGCTGAATCACAA-GCACGCCCT  1123
      | | ||  ||||||||||  ||| |||||||||
seq2  GGCCGAACCTAGCTGAATTCCAAGGCACGCCCT  1129