BAC Information

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BAC

Clone NameB6Ng01-242F02
Chromosome5 (Build37)
Map Location 7,130,064 - 7,289,053
singlet/doubletdoublet
Overlap geneLOC100042651
Upstream geneLOC100041208, EG435830
Downstream gene4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4, Sri, LOC433840, Adam22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242F02.bB6Ng01-242F02.g
ACCGA051996GA051997
length8831,127
definitionB6Ng01-242F02.b B6Ng01-242F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,130,064 - 7,130,940)(7,287,923 - 7,289,053)
sequence
gaattcaactccaaagacctaaagagtagaagaagagaaccaccatcagc
aattttccctataatcttcacataagatttatggcaagtagaatcatata
tggtaaataaatggctgtgtaaataagtaaataaacacaaataaataaat
agattaattaattcatttaaagaaaaataaatgcatttatttattattta
tttatttatttagatattttttttctaattgacttactttttattaaaaa
tgtttcatacaatatatttttatcatatccttctctgtcatctatctcct
cccagatcctctcacctatcgaaattcgattatttcttcctccctcccca
ttgctctcaaaatggcaaaaatgagtcaaatggcaacaagccaaaattaa
aacaaaatgaaacaaaataaaattacagtaagcaaagtaacaagaaaata
agatattaatgcaaaaccaaccaaccagccaaaacaaaaagctacacacc
cagtgacacaccattggagaaaatttatttctctttttcagcacgtggct
atcaattggaaacagtttctttttttttttttttttttttttttttgtgc
tggatctgagtgtaatttgtcaaatcgagcatcaaactttttttttccat
tttttattaggtatttagctcatttacatttccaatgctataccaaaatt
cccccatacccacccacccccactcccctacccacccactcccccttttt
ggccctggcgttcccctgtactgggcatataaagtttgcgtgtccaatgg
gcctcttctttccagtggatgaccgacttaggccatctttttggatacat
atgcagctagagtcaagaagctcccgggtactg

gaattcttaccgttgaagtggaaaaatctcaatgttgcttcacgctgtag
ataaacatccatgttgatgatacagcgtggaggatgaacaaggaaaacca
tgatacagccatccccagaggatgctgcataggaggtcaaccactgaact
attacttgatgtatacttctcctctgctggagggaaaagtgctaaaatga
gaaaaaggaaaattaggaagtatttctttatacccaaggctttaccaaaa
agtctcactttgtttcctagtgttgatgttaggatatgtaaagactatga
tctcttttgatttccaaagtaacattttgaaggtttaaccatcttcttac
tcttatttttccatctctacaataaatgtgtatgcatgaatatgcttgaa
tagatagactttagacattgtgattatgagctatgagtgatagtcccttt
aattatgtcaacattctctatatacatgcatatatgcacatatattttat
atctgtaaaatacatggctgtatatatatagggtttatattcccagtaga
aggcaagaatataaatagaattcaaaatacaataaaattgtgttccaacc
ggttggctttattaagcagtgcatttggaggaataaaaatcaatgtatga
ttaaaattagcaggccttggggatagcatttgaaatgtaaatgaagaaaa
tatctaataaaaaattaggtgaggctgcagggtttcgctatggagcttat
aggagtgagaagcgcagctgtttcgagttatcaagttcttcttacagaca
gaacatacggtacgaggtgtgtcctagatgaccagcctggtcttcattgc
tctcaaccctgaacccactttccagttcggcagaacaacactgtgctttc
ctttgtagagaagaaattctaaccttgaaaggagttagaatttatagggt
aaagtgttgaaagagggagttttggcagctaacatcttggcattaagaat
agattcatgatacttggtatttagtgctatctagtgtaagaaatctgcat
tcaaactacaaatttagcgtgacttcaatttcaaatgtgggtggactgac
atagattagattctgtctattttaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_7130064_7130940
seq2: B6Ng01-242F02.b_48_930

seq1  GAATTCAACTCCAAAGACCTAAAGAGTAGAAGAAGAGAACCACCATCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCCAAAGACCTAAAGAGTAGAAGAAGAGAACCACCATCAGC  50

seq1  AATTTTCCCTATAATCTTCACATAAGATTTATGGCAAGTAGAATCATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCCTATAATCTTCACATAAGATTTATGGCAAGTAGAATCATATA  100

seq1  TGGTAAATAAATGGCTGTGTAAATAAGTAAATAAACACAAATAAATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATAAATGGCTGTGTAAATAAGTAAATAAACACAAATAAATAAAT  150

seq1  AGATTAATTAATTCATTTAAAGAAAAATAAATGCATTTATTTATTATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAATTAATTCATTTAAAGAAAAATAAATGCATTTATTTATTATTTA  200

seq1  TTTATTTATTTAGATATTTTTTTTCTAATTGACTTACTTTTTATTAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTAGATATTTTTTTTCTAATTGACTTACTTTTTATTAAAAA  250

seq1  TGTTTCATACAATATATTTTTATCATATCCTTCTCTGTCATCTATCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATACAATATATTTTTATCATATCCTTCTCTGTCATCTATCTCCT  300

seq1  CCCAGATCCTCTCACCTATCGAAATTCGATTATTTCTTCCTCCCTCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATCCTCTCACCTATCGAAATTCGATTATTTCTTCCTCCCTCCCCA  350

seq1  TTGCTCTCAAAATGGCAAAAATGAGTCAAATGGCAACAAGCCAAAATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCAAAATGGCAAAAATGAGTCAAATGGCAACAAGCCAAAATTAA  400

seq1  AACAAAATGAAACAAAATAAAATTACAGTAAGCAAAGTAACAAGAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATGAAACAAAATAAAATTACAGTAAGCAAAGTAACAAGAAAATA  450

seq1  AGATATTAATGCAAAACCAACCAACCAGCCAAAACAAAAAGCTACACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAATGCAAAACCAACCAACCAGCCAAAACAAAAAGCTACACACC  500

seq1  CAGTGACACACCATTGGAGAAAATTTATTTCTCTTTTTCAGCACGTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACACACCATTGGAGAAAATTTATTTCTCTTTTTCAGCACGTGGCT  550

seq1  ATCAATTGGAAACAGTTTC-TTTTTTTTTTTTTTTTTTTTTTTTTTGTGC  599
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCAATTGGAAACAGTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGC  600

seq1  TGGATCTGAGTGTAATTTGTCAAATCGAGCATCAAACTTTTTTTTTCCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGAGTGTAATTTGTCAAATCGAGCATCAAACTTTTTTTTTCCAT  650

seq1  TTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAATT  700

seq1  CCCCCATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTT  750

seq1  GGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATG  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGCCCTGGCGTTCCCCTGTACT-GGGCATATAAAGTTTGCGTGTCCAATG  799

seq1  GGCCTC-TCTTTCCAGT-GATGACCGAC-TAGGCCATCTTTT--GATACA  844
      |||||| |||||||||| |||||||||| |||||||||||||  ||||||
seq2  GGCCTCTTCTTTCCAGTGGATGACCGACTTAGGCCATCTTTTTGGATACA  849

seq1  TATGCAGCTAGAGTCAAG-AGCTCCGGGGTACTG  877
      |||||||||||||||||| |||||| ||||||||
seq2  TATGCAGCTAGAGTCAAGAAGCTCCCGGGTACTG  883


seq1: chr5_7287923_7289053
seq2: B6Ng01-242F02.g_65_1191 (reverse)

seq1  ACTTAAAATA-ACAG-ATCTAAATCTATTGCTCAGT---CACACATTTGA  45
      |||||||||| |||| |||| |||||||   |||||   | |||||||| 
seq2  ACTTAAAATAGACAGAATCT-AATCTAT--GTCAGTCCACCCACATTTG-  46

seq1  AAATGGAAGTCAACGGCTAATTTGTTAGTTTGGAATGCCAGATTTTCTTA  95
      |||| |||||||   ||||| ||  |||||| ||||| |||| |||||| 
seq2  AAATTGAAGTCA--CGCTAAATTTGTAGTTT-GAATG-CAGA-TTTCTT-  90

seq1  ACACTAGATAGCACTAAAATACCAAGTATCATGAATCTATTCTTAATGCC  145
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACACTAGATAGCACT-AAATACCAAGTATCATGAATCTATTCTTAATGCC  139

seq1  AAGATG-TAGCTGCCAAAACTCCCTCTTTCAACACTTTACCCTATAAATT  194
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTAGCTGCCAAAACTCCCTCTTTCAACACTTTACCCTATAAATT  189

seq1  CTAACT-CTTTCAAGGTTAGAATTTCTTCTCTACAAAGGAAAGCACAGTG  243
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCCTTTCAAGGTTAGAATTTCTTCTCTACAAAGGAAAGCACAGTG  239

seq1  TTGTTCTGCCGAACTGGAAAGTGGGTTCAGGGTTGAGAGCAATGAAGACC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGCCGAACTGGAAAGTGGGTTCAGGGTTGAGAGCAATGAAGACC  289

seq1  AGGCTGGTCATCTAGGACACACCTCGTACCGTATGTTCTGTCTGTAAGAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGTCATCTAGGACACACCTCGTACCGTATGTTCTGTCTGTAAGAA  339

seq1  GAACTTGATAACTCGAAACAGCTGCGCTTCTCACTCCTATAAGCTCCATA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGATAACTCGAAACAGCTGCGCTTCTCACTCCTATAAGCTCCATA  389

seq1  GCGAAACCCTGCAGCCTCACCTAATTTTTTATTAGATATTTTCTTCATTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAACCCTGCAGCCTCACCTAATTTTTTATTAGATATTTTCTTCATTT  439

seq1  ACATTTCAAATGCTATCCCCAAGGCCTGCTAATTTTAATCATACATTGAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAAATGCTATCCCCAAGGCCTGCTAATTTTAATCATACATTGAT  489

seq1  TTTTATTCCTCCAAATGCACTGCTTAATAAAGCCAACCGGTTGGAACACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCCTCCAAATGCACTGCTTAATAAAGCCAACCGGTTGGAACACA  539

seq1  ATTTTATTGTATTTTGAATTCTATTTATATTCTTGCCTTCTACTGGGAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGTATTTTGAATTCTATTTATATTCTTGCCTTCTACTGGGAAT  589

seq1  ATAAACCCTATATATATACAGCCATGTATTTTACAGATATAAAATATATG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCTATATATATACAGCCATGTATTTTACAGATATAAAATATATG  639

seq1  TGCATATATGCATGTATATAGAGAATGTTGACATAATTAAAGGGACTATC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATATGCATGTATATAGAGAATGTTGACATAATTAAAGGGACTATC  689

seq1  ACTCATAGCTCATAATCACAATGTCTAAAGTCTATCTATTCAAGCATATT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAGCTCATAATCACAATGTCTAAAGTCTATCTATTCAAGCATATT  739

seq1  CATGCATACACATTTATTGTAGAGATGGAAAAATAAGAGTAAGAAGATGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATACACATTTATTGTAGAGATGGAAAAATAAGAGTAAGAAGATGG  789

seq1  TTAAACCTTCAAAATGTTACTTTGGAAATCAAAAGAGATCATAGTCTTTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTTCAAAATGTTACTTTGGAAATCAAAAGAGATCATAGTCTTTA  839

seq1  CATATCCTAACATCAACACTAGGAAACAAAGTGAGACTTTTTGGTAAAGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCTAACATCAACACTAGGAAACAAAGTGAGACTTTTTGGTAAAGC  889

seq1  CTTGGGTATAAAGAAATACTTCCTAATTTTCCTTTTTCTCATTTTAGCAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTATAAAGAAATACTTCCTAATTTTCCTTTTTCTCATTTTAGCAC  939

seq1  TTTTCCCTCCAGCAGAGGAGAAGTATACATCAAGTAATAGTTCAGTGGTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTCCAGCAGAGGAGAAGTATACATCAAGTAATAGTTCAGTGGTT  989

seq1  GACCTCCTATGCAGCATCCTCTGGGGATGGCTGTATCATGGTTTTCCTTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCTATGCAGCATCCTCTGGGGATGGCTGTATCATGGTTTTCCTTG  1039

seq1  TTCATCCTCCACGCTGTATCATCAACATGGATGTTTATCTACAGCGTGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTCCACGCTGTATCATCAACATGGATGTTTATCTACAGCGTGAA  1089

seq1  GCAACATTGAGATTTTTCCACTTCAACGGTAAGAATTC  1131
      ||||||||||||||||||||||||||||||||||||||
seq2  GCAACATTGAGATTTTTCCACTTCAACGGTAAGAATTC  1127


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