BAC Information

Click to search

BAC

Clone NameB6Ng01-242L17
Chromosome5 (Build37)
Map Location 36,717,513 - 36,882,809
singlet/doubletdoublet
Overlap geneSorcs2, Grpel1, Ccdc96, Tbc1d14
Upstream geneHmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, 2310020A21Rik
Downstream geneD5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242L17.bB6Ng01-242L17.g
ACCGA052299GA052300
length1,108959
definitionB6Ng01-242L17.b B6Ng01-242L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,717,513 - 36,718,615)(36,881,865 - 36,882,809)
sequence
gaattcaggtgcgagtcacaatgtgggcacgagcttcacagtctgcttca
gagggagccgtgtttcgtctccccagtgggacacacgcatcccagcctct
ggctctgaaacactcccaccccagccatcctaactgctcaagagcctcca
ggtcgttatctagattttttttttaaagaatttttttaaacttattttat
gtatgagtacactgtagctgtcttcagacacaccagactagggtatcaga
tctcattccagatggttgtgagccaccatgtggttgctgggaattgaact
caggacctctggaagagaagtcagtgctcttaaccgctgagccatctctc
cagctctatctagatttttttgtaacacagtggtgactgggtttttatgt
cattgtctgtaggtctgtggtagcactactcagtaagggaccaagccctc
tgctgaggcaggattggccctgtctgcgtggctacctcttgccagacttt
tagaaaggactcagaaagttggggtttaatatcacttatcctgaaaggct
tcatgagtctccccttccaggaagctgctggctctcttctggatgaaact
gtccttgacgcaccagcttttccaacttcaactgtgctctgtcttcctag
tgttgtgtaagcccacaccagcccagcacagtctcctggtgtgtttcagc
tttgtgctgtatcatttatattgcaagcagtactcattagccagtggcta
gtggtcaccttcccaccaccccacctacaaatatttttttgagacagggt
ttctctgtatagccctggctgtccctctgtagaccaggctggcctcgaaa
ttcagaaatcagcctgcctctgccttccaagtgctgggattaaaagtacg
caccaccaccacctggcaaccccagctacactttgatcatcacaagccta
gaatgggaagacaccaggaatagaaatgccactttagagtccttgtgcct
ctggccatgctgcacccccacccccaccccttttccaggaactaaggtgg
cttccatgtgcaaagctgaaagtcaccagaaggtgtctgcccaaagggtg
gggagcga
gaattcacatagttctctgggagtgaggttgatcagaaagctgatgcgct
gttggttctcactgaagcagctgctggttaccgtaaccataggcttacag
gtttgttgttagctttgtttacccaggatcgtcttgtatggttttgcaga
atcaagccagtttttagatgttagaaaatgccggaaagtggtaaatccag
ggcagcttagagtgacattcattcttctgagctctggtttctgagaggtc
tgggatacaaaagatcacacattacaggaagagtgtatttgggtgctcaa
cagaggtagctgaaaacctacagacacattttaaaacactaagaaatgaa
tacagccttcattttcatcagcaccctgcttcatttcgtcaactttacta
agtatgacttctaacccaggacctacagttggaaggagagaagggactcc
tgcaagttggcctctgacttactattgtgtgctatggcatgggcatgtac
atgcacgtgtgcacaggcaacgcatgcacacacgcacacgtatacacaca
aactcagtttcccagttttaggtgggtagagtaagcatacggtgcctctc
caggcccagtgagcacactgcatggacagaggcacagagcatccactcgc
cagtgagcacactgcatggacagaggcacagagcatccactcgccagggc
tggggagcacatggtagcaggactgtgcaagaaagactataatttcagag
tgctgctgaatagaaaactgacatttttagcctgaactcaggcagaccaa
acccagaaagagaacaccagatggggctctgtgcctgggaaaaaagagtg
ggtcccagtacttaagagataaggcagaagacccctcctttgtgtttatt
ttccccctctgttctttaaaaaaaatattaattttatggtgtattttaaa
tgcatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_36717513_36718615
seq2: B6Ng01-242L17.b_45_1152

seq1  GAATTCAGGTGCGAGTCACAATGTGGGCACGAGCTTCACAGTCTGCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGCGAGTCACAATGTGGGCACGAGCTTCACAGTCTGCTTCA  50

seq1  GAGGGAGCCGTGTTTCGTCTCCCCAGTGGGACACACGCATCCCAGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCCGTGTTTCGTCTCCCCAGTGGGACACACGCATCCCAGCCTCT  100

seq1  GGCTCTGAAACACTCCCACCCCAGCCATCCTAACTGCTCAAGAGCCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAAACACTCCCACCCCAGCCATCCTAACTGCTCAAGAGCCTCCA  150

seq1  GGTCGTTATCTAGATTTTTTTTTTAAAGAATTTTTTTAAACTTATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTTATCTAGATTTTTTTTTTAAAGAATTTTTTTAAACTTATTTTAT  200

seq1  GTATGAGTACACTGTAGCTGTCTTCAGACACACCAGACTAGGGTATCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTACACTGTAGCTGTCTTCAGACACACCAGACTAGGGTATCAGA  250

seq1  TCTCATTCCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACT  300

seq1  CAGGACCTCTGGAAGAGAAGTCAGTGCTCTTAACCGCTGAGCCATCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTCTGGAAGAGAAGTCAGTGCTCTTAACCGCTGAGCCATCTCTC  350

seq1  CAGCTCTATCTAGATTTTTTTGTAACACAGTGGTGACTGGGTTTTTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTATCTAGATTTTTTTGTAACACAGTGGTGACTGGGTTTTTATGT  400

seq1  CATTGTCTGTAGGTCTGTGGTAGCACTACTCAGTAAGGGACCAAGCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTGTAGGTCTGTGGTAGCACTACTCAGTAAGGGACCAAGCCCTC  450

seq1  TGCTGAGGCAGGATTGGCCCTGTCTGCGTGGCTACCTCTTGCCAGACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGCAGGATTGGCCCTGTCTGCGTGGCTACCTCTTGCCAGACTTT  500

seq1  TAGAAAGGACTCAGAAAGTTGGGGTTTAATATCACTTATCCTGAAAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGACTCAGAAAGTTGGGGTTTAATATCACTTATCCTGAAAGGCT  550

seq1  TCATGAGTCTCCCCTTCCAGGAAGCTGCTGGCTCTCTTCTGGATGAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTCTCCCCTTCCAGGAAGCTGCTGGCTCTCTTCTGGATGAAACT  600

seq1  GTCCTTGACGCACCAGCTTTTCCAACTTCAACTGTGCTCTGTCTTCCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGACGCACCAGCTTTTCCAACTTCAACTGTGCTCTGTCTTCCTAG  650

seq1  TGTTGTGTAAGCCCACACCAGCCCAGCACAGTCTCCTGGTGTGTTTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTAAGCCCACACCAGCCCAGCACAGTCTCCTGGTGTGTTTCAGC  700

seq1  TTTGTGCTGTATCATTTATATTGCAAGCAGTACTCATTAGCCAGTGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCTGTATCATTTATATTGCAAGCAGTACTCATTAGCCAGTGGCTA  750

seq1  GTGGTCACCTTCCCACCACCCCACCTACAAATATTTTTTTGAGACAGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCACCTTCCCACCACCCCACCTACAAATATTTTTTTGAGACAGGGT  800

seq1  TTCTCTGTATAGCCCTGGCTGTCCCTCTGTAGACCAGGCTGGCCTCG-AA  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCTCTGTATAGCCCTGGCTGTCCCTCTGTAGACCAGGCTGGCCTCGAAA  850

seq1  TTCAGAAATCAGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAGTACG  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCAGAAATCAGCCTGCCTCTGCCTTCCAAGTGCTGGGATTAAAAGTACG  900

seq1  CACCACCACCACCTGGCAACCCCAGCTACAC-TTGATCATCACAAGCCTA  948
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACCACCACCACCTGGCAACCCCAGCTACACTTTGATCATCACAAGCCTA  950

seq1  GAATGGGAAGACACCAAGGAATAG-AATGCCACTTTAGAGTCCTTGTGCC  997
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  GAATGGGAAGACACC-AGGAATAGAAATGCCACTTTAGAGTCCTTGTGCC  999

seq1  TCTGGCCATGCTGCA-CCCCACCCCCACCCC-TTTCCAGGAACTAAGGTG  1045
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  TCTGGCCATGCTGCACCCCCACCCCCACCCCTTTTCCAGGAACTAAGGTG  1049

seq1  GCTTCCATGTGCAAAGCTGAAAAGTCACCAGAAGGTGTCTGCC--AAAGG  1093
      ||||||||||||||||||| |||||||||||||||||||||||  || ||
seq2  GCTTCCATGTGCAAAGCTG-AAAGTCACCAGAAGGTGTCTGCCCAAAGGG  1098

seq1  TTGGGAGCGA  1103
      | ||||||||
seq2  TGGGGAGCGA  1108

seq1: chr5_36881865_36882809
seq2: B6Ng01-242L17.g_73_1031 (reverse)

seq1  TAAAATGCATAT-AAATACA-CATAAAA-TAATATTTTTTTTAAAGAACA  47
      |||||||||| | ||||||| ||||||| |||||||||||||||||||||
seq2  TAAAATGCATTTAAAATACACCATAAAATTAATATTTTTTTTAAAGAACA  50

seq1  GA-GGGGAAAAT-AACACAAAGGA-GGGTC-TCTGCC-TATCTC-TAAGT  91
      || ||||||||| ||||||||||| ||||| |||||| |||||| |||||
seq2  GAGGGGGAAAATAAACACAAAGGAGGGGTCTTCTGCCTTATCTCTTAAGT  100

seq1  ACT-GGACCCACTC-TTTTTCCCAGGCACAGAGCCCCATCTGGTGTTCTC  139
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTGGGACCCACTCTTTTTTCCCAGGCACAGAGCCCCATCTGGTGTTCTC  150

seq1  TTTCTGGGTTTGGTCTGCCTGAGTTCAGGCTAAAAATGTCAG-TTTCTAT  188
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTCTGGGTTTGGTCTGCCTGAGTTCAGGCTAAAAATGTCAGTTTTCTAT  200

seq1  TCAGCAGCACTCTG-AATTATAGTC-TTCTTGCACAGTCCTGCTACCATG  236
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  TCAGCAGCACTCTGAAATTATAGTCTTTCTTGCACAGTCCTGCTACCATG  250

seq1  TGCTCCCCAGCCCTGGCGAGTGGATGCTCTGTGCCTCTGTCCATGCAGTG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCAGCCCTGGCGAGTGGATGCTCTGTGCCTCTGTCCATGCAGTG  300

seq1  TGCTCACTGGCGAGTGGATGCTCTGTGCCTCTGTCCATGCAGTGTGCTCA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACTGGCGAGTGGATGCTCTGTGCCTCTGTCCATGCAGTGTGCTCA  350

seq1  CTGGGCCTGGAGAGGCACCGTATGCTTACTCTACCCACCTAAAACTGGGA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTGGAGAGGCACCGTATGCTTACTCTACCCACCTAAAACTGGGA  400

seq1  AACTGAGTTTGTGTGTATACGTGTGCGTGTGTGCATGCGTTGCCTGTGCA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTTTGTGTGTATACGTGTGCGTGTGTGCATGCGTTGCCTGTGCA  450

seq1  CACGTGCATGTACATGCCCATGCCATAGCACACAATAGTAAGTCAGAGGC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCATGTACATGCCCATGCCATAGCACACAATAGTAAGTCAGAGGC  500

seq1  CAACTTGCAGGAGTCCCTTCTCTCCTTCCAACTGTAGGTCCTGGGTTAGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGCAGGAGTCCCTTCTCTCCTTCCAACTGTAGGTCCTGGGTTAGA  550

seq1  AGTCATACTTAGTAAAGTTGACGAAATGAAGCAGGGTGCTGATGAAAATG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATACTTAGTAAAGTTGACGAAATGAAGCAGGGTGCTGATGAAAATG  600

seq1  AAGGCTGTATTCATTTCTTAGTGTTTTAAAATGTGTCTGTAGGTTTTCAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTATTCATTTCTTAGTGTTTTAAAATGTGTCTGTAGGTTTTCAG  650

seq1  CTACCTCTGTTGAGCACCCAAATACACTCTTCCTGTAATGTGTGATCTTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCTGTTGAGCACCCAAATACACTCTTCCTGTAATGTGTGATCTTT  700

seq1  TGTATCCCAGACCTCTCAGAAACCAGAGCTCAGAAGAATGAATGTCACTC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCAGACCTCTCAGAAACCAGAGCTCAGAAGAATGAATGTCACTC  750

seq1  TAAGCTGCCCTGGATTTACCACTTTCCGGCATTTTCTAACATCTAAAAAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGCCCTGGATTTACCACTTTCCGGCATTTTCTAACATCTAAAAAC  800

seq1  TGGCTTGATTCTGCAAAACCATACAAGACGATCCTGGGTAAACAAAGCTA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGATTCTGCAAAACCATACAAGACGATCCTGGGTAAACAAAGCTA  850

seq1  ACAACAAACCTGTAAGCCTATGGTTACGGTAACCAGCAGCTGCTTCAGTG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAACCTGTAAGCCTATGGTTACGGTAACCAGCAGCTGCTTCAGTG  900

seq1  AGAACCAACAGCGCATCAGCTTTCTGATCAACCTCACTCCCAGAGAACTA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAACAGCGCATCAGCTTTCTGATCAACCTCACTCCCAGAGAACTA  950

seq1  TGTGAATTC  945
      |||||||||
seq2  TGTGAATTC  959