BAC Information

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BAC

Clone NameB6Ng01-243A17
Chromosome5 (Build37)
Map Location 14,477,057 - 14,478,197
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243A17.bB6Ng01-243A17.g
ACCGA052533GA052534
length1,1431,157
definitionB6Ng01-243A17.b B6Ng01-243A17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatcaagaccagaaattagcttcaagatttattttgttacaata
gttaaccagatatcattcatctgttttaaagcgtgagttaaaacatgtac
tgtttttatcactttctggctcactgagctgtgaacttggaagacaggtg
ttatatttgtatgtgtagtcagtgaatggtgatacttaactatttttttc
ttgtcttgaagttatatctgagacttgagaagtctaaggctcatggattt
gaatttatttccataaatttgaaaatttttggataattggcatagtctca
aaggaaacacttatataaatgattgtaatagtttattttataattaattg
taccacttacagttttaaagttatatttacaatatttacttagtgaatgg
ctagttgtaaaagtgcatgattgtctctaaaagtaaaagttgtatcagac
atttcttatgttattaaaactaataatcttcaaattttctctaaacaaaa
aataattttttgcaaaaactatttttcaaaagcaacattttatgttgtag
aaataggaattattttatgataactgttgtgaaaaatccccctacatata
tgttactccttatttagagacacttcctagaaccatgtcagctaatgcta
caattatgcatcttcctaaattcttttcatagttaaaagtatttataaac
acaaaacaatgataaggaaacatcattttcacattttctattacttatta
ggcacacacaactaaaatatcacatttccctaccacattcttaattatat
atctcatttattttaatattccattgtattgtatataatggaatttcttt
gctggttttaatcaaattcctgttcatagtgtcagcattcattacatttc
atttggtcaatgttcactaaaggcctatacaggcttggttaatttaaaag
tcagtcaataaattagatgtttcctacaattctggtacagtatgcatttc
tagaagaactatggcagtgtattttgggaaagttggtgagaggccatcac
cttgtcaggaccttaaaactgtcatgttatttgtagcacatgctcttgga
gttagccagatgtttctgacagggacttggccaaacattaaga
gaattctgtatgtaagcagagcttaaggagggattctgatgagggctcag
aggagaacacagagagaaatgtgtacagaaaagctatgctaataagcttc
agatggaggattagaggccactgttccaaaatcacaggaaagatttcccc
cacaacctggtgcatggtggcaggataaagttaataggaaaagagctgtt
tacttatcaggaaagttctaagaaatcacagaatgcaagcaccagcctag
atgttgctggttacattcaaagttacttgggggccagagcaaggaggagc
agagtaagaagacttgaaaattgttcaatacctctagaaaaggaacatat
ttaaaaatgaaatcaagatggaagttgtagatagcattaattaaaaataa
ggcacattatgtatactaatactataaataagtagcaaggtggccatctc
aggaatcagccagactccttaataagcattgcatatatgaagatgcaaac
gtgtacatttgtttcaacggctttgagaataaagttcttctgtaaactgc
gtatctctgctacttaaggtagatggcacaaagagactacaagcaaagat
cttcctagtgggcagcataagtattgtgcatacactcttgtgtagaatac
agaatgcaaggaattttgagtaacagaggcttccgctgagatataagctt
aggaaaccatactacattattcagggtcatcatctctgaagcagtgcttg
gtaagtcaagaactggggtactgagaatgaagccaaagctttaatagaca
tccaaaggacttagagaagccatcatccaggtattcctggcaaaggaaca
tgatcacagcttgaaaattcagcctgaatgaggttacagccagcaaagct
gaaggaacagggttgacgagtgctcgggatctatctcattattctctttc
aaatactgggaaatgaagctatggggatttagctaagcttgtctcatcag
acatggtcttatttggtaataatatcttacttctagatgaatgtgacatt
ctgctctgacttgctatcttttttcctgcaggtatgcaagtttaaatatt
gcactgggccttagctatgaatttatatcaggacttggttaacttataat
tatattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14477057_14478197
seq2: B6Ng01-243A17.b_44_1186

seq1  GAATTCCATCAAGACCAGAAATTAGCTTCAAGATTTATTTTGTTACAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAAGACCAGAAATTAGCTTCAAGATTTATTTTGTTACAATA  50

seq1  GTTAACCAGATATCATTCATCTGTTTTAAAGCGTGAGTTAAAACATGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCAGATATCATTCATCTGTTTTAAAGCGTGAGTTAAAACATGTAC  100

seq1  TGTTTTTATCACTTTCTGGCTCACTGAGCTGTGAACTTGGAAGACAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATCACTTTCTGGCTCACTGAGCTGTGAACTTGGAAGACAGGTG  150

seq1  TTATATTTGTATGTGTAGTCAGTGAATGGTGATACTTAACTATTTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGTATGTGTAGTCAGTGAATGGTGATACTTAACTATTTTTTTC  200

seq1  TTGTCTTGAAGTTATATCTGAGACTTGAGAAGTCTAAGGCTCATGGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGAAGTTATATCTGAGACTTGAGAAGTCTAAGGCTCATGGATTT  250

seq1  GAATTTATTTCCATAAATTTGAAAATTTTTGGATAATTGGCATAGTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTTCCATAAATTTGAAAATTTTTGGATAATTGGCATAGTCTCA  300

seq1  AAGGAAACACTTATATAAATGATTGTAATAGTTTATTTTATAATTAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACACTTATATAAATGATTGTAATAGTTTATTTTATAATTAATTG  350

seq1  TACCACTTACAGTTTTAAAGTTATATTTACAATATTTACTTAGTGAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTACAGTTTTAAAGTTATATTTACAATATTTACTTAGTGAATGG  400

seq1  CTAGTTGTAAAAGTGCATGATTGTCTCTAAAAGTAAAAGTTGTATCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGTAAAAGTGCATGATTGTCTCTAAAAGTAAAAGTTGTATCAGAC  450

seq1  ATTTCTTATGTTATTAAAACTAATAATCTTCAAATTTTCTCTAAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATGTTATTAAAACTAATAATCTTCAAATTTTCTCTAAACAAAA  500

seq1  AATAATTTTTTGCAAAAACTATTTTTCAAAAGCAACATTTTATGTTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTTGCAAAAACTATTTTTCAAAAGCAACATTTTATGTTGTAG  550

seq1  AAATAGGAATTATTTTATGATAACTGTTGTGAAAAATCCCCCTACATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAATTATTTTATGATAACTGTTGTGAAAAATCCCCCTACATATA  600

seq1  TGTTACTCCTTATTTAGAGACACTTCCTAGAACCATGTCAGCTAATGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTCCTTATTTAGAGACACTTCCTAGAACCATGTCAGCTAATGCTA  650

seq1  CAATTATGCATCTTCCTAAATTCTTTTCATAGTTAAAAGTATTTATAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGCATCTTCCTAAATTCTTTTCATAGTTAAAAGTATTTATAAAC  700

seq1  ACAAAACAATGATAAGGAAACATCATTTTCACATTTTCTATTACTTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAATGATAAGGAAACATCATTTTCACATTTTCTATTACTTATTA  750

seq1  GGCACACACAACTAAAATATCACATTTCCCTACCACATTCTTAATTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACAACTAAAATATCACATTTCCCTACCACATTCTTAATTATAT  800

seq1  ATCTCATTTATTTTAATATTCCATTGTATTGTATATAATGGAATTTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTTATTTTAATATTCCATTGTATTGTATATAATGGAATTTCTTT  850

seq1  GCTGGTTTTAATCAAATTCCTGTTCATAGTGTCAGCATTCATTACATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTTTAATCAAATTCCTGTTCATAGTGTCAGCATTCATTACATTTC  900

seq1  ATTTGGTCAATGTTCACT-AAGGCCTATACAGGCTTGGTTAATTTAAAAG  949
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTGGTCAATGTTCACTAAAGGCCTATACAGGCTTGGTTAATTTAAAAG  950

seq1  TCAGTCAATAAATTAGATGTTTCCTACAATTCTGGTACAGTATGCAATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCAGTCAATAAATTAGATGTTTCCTACAATTCTGGTACAGTATGC-ATTT  999

seq1  CTAGAAGAACTATGGCAGTGTATTTTGGAAAAGTTGGTGAGAGGCCCATC  1049
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  CTAGAAGAACTATGGCAGTGTATTTTGGGAAAGTTGGTGAGAGG-CCATC  1048

seq1  ACCTTTGTCAGGACCTAAAAACTGTCATGTTATTTGTAGCACATGCTCTT  1099
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACC-TTGTCAGGACCTTAAAACTGTCATGTTATTTGTAGCACATGCTCTT  1097

seq1  -GAGTAAG-CAGATG-TTCTGACAGGGGACTGG-CAAACATCAAGA  1141
       |||| || |||||| |||||||||||   ||| ||||||| ||||
seq2  GGAGTTAGCCAGATGTTTCTGACAGGGACTTGGCCAAACATTAAGA  1143