BAC Information

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BAC

Clone NameB6Ng01-243H12
Chromosome5 (Build37)
Map Location 102,828,259 - 102,829,382
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527
Downstream geneLOC625780, Arhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243H12.bB6Ng01-243H12.g
ACCGA052845GA052846
length8311,141
definitionB6Ng01-243H12.b B6Ng01-243H12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctatgcaacaatggtggaagcttatttttcatccagaatgaac
aagttctttcagcgctgatgcttggtcttttgcttcatattgcatatgca
agtatagatgtgtatgtgtgtaagtatgtaagaatatatgtgtgtatgtg
taagtatgtaactagtatgtagactagtagctgtgactggcaagaatgaa
tgaaagaatttatgaacgtatatatgtttctatgcacatttgcctgtgtg
tgaacactttgctttgacagtgtgactctctcctattgctccaaacctcc
ttcctgcctggcaaggaagaagcaaggcttctgagccacagagaaaggag
ccctcgcaattaatcctttacttcatccccactgttaagcaacacctgtt
aaatcgcccagaggcctccagattctggattcagagtaacttagaatcaa
gacaggtaaacaaatgttatgacaggaagcaatcataatctctccccaag
aaccaaagtctttacccctggccaagggttctccccaattcgggtggccc
tcggagaaacccaatccaaaagctaaacccccctgggagtttctggctgt
gtttgagacactgttttgagacaaaaagcatttccccctctgtaaaaggg
gggacgggaaagggacacccctcaaaagataacatgtctccaaaattcaa
aaaatatattctcttagggtagtattctgttaaaatccaaaaaaatggtc
cctatttccacaaaaaaagagaaacttttggggctcttttggggggaaat
aataaataaagaaaaactcacaaggtgttcc
gaattcagggtcatatgtgctaagcaaagcctgctacccacttagctcca
gctccagccctaagagctattctgttgtgagggggttaatgttggttata
aaagaacttggggatatgggttctcacttgctcttgctctcactctcatt
ctctcttgcacacgcctgtctttactgaacttccaccatccagaattatg
tgctatacatgcctactccttaatccatcctgtctatggtgtatgtcaca
gaggccttaggtaaccaagacacggcatcagtgccataaccgctggttgg
gatgtgagtaaggtacaatctcatattgatcctggtgcttgtgagtactg
gtagccagcttatgatcaagactttcaataatgattggcacaagaggcgt
gcctatggggacgggtttatgtatgtgggagttttgcttacatttatatc
tgcacagcacatgcatgcagacctcatggagcctccatgtgggtgcagtg
aattgaacctggatcctctggaagaacaacaaatgcccccaaacattgaa
ccacctcttcagccacatcaaattaaaaaaaaataagatatgtttaaatg
ttgtattttatttgttgcatattttattatttttaaagaattatttacat
atcttactgttattcaattattatttattttaaatatgatattcaaaata
taagaaaaaaataaaaatataagttatcttgacttaccaattataaaagc
tcatataaagtttcatgactgagataatccatcagcttcacacatcatag
tatgtccagcatgccacatttcacacacacacacacacacacacacacac
acacacacacaccgagagagagagagagagagagagagagagagagagag
agagagaatcctccaaacatgttaaacggtaccaaatacccaggtataca
atgtctaccaagactaaatggatggtggtccctagaatcaagtaggggct
tgttgcgtgttcaaacaggcattttggttttggtgaataacatctcctac
ccaatggaccaggataattttgaaatggtgttaattggatgctgggccct
caagtccctatctctccctccctctgcctcccggtgagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_102828259_102829382
seq2: B6Ng01-243H12.g_67_1207 (reverse)

seq1  TGGCTCA-CGGGAGGCAGAGGGA-GGAGAATAAGGAACTTGAGG--CCAG  46
      ||||||| ||||||||||||||| |||||   ||| ||||||||  ||||
seq2  TGGCTCACCGGGAGGCAGAGGGAGGGAGAGATAGGGACTTGAGGGCCCAG  50

seq1  CATACAATAAACAC--ATTCAAAAATATCCTTGCTCA-TGTGTA-GAGAT  92
      ||| |||| |||||   ||||||| |||||| |  || || ||| |||||
seq2  CATCCAATTAACACCATTTCAAAATTATCCTGGTCCATTGGGTAGGAGAT  100

seq1  GTTA-TCA-CAAAACAAAAATGCTTGTCTG-ACACGC-ACAAGCCCCTAC  138
      |||| ||| |||||| ||||||| ||| || |||||| ||||||||||||
seq2  GTTATTCACCAAAACCAAAATGCCTGTTTGAACACGCAACAAGCCCCTAC  150

seq1  TTGATTCTAGG--ACACAATCAATTTAGTCTT-GTAGACATTGTATACCT  185
      |||||||||||   ||| ||| |||||||||| |||||||||||||||||
seq2  TTGATTCTAGGGACCACCATCCATTTAGTCTTGGTAGACATTGTATACCT  200

seq1  GTGTATTT-GTACGGTTT-ACATGTTTGGAGATTTCTCTCTCTCTCTCTC  233
      | |||||| |||| |||| ||||||||||||  |||||||||||||||||
seq2  GGGTATTTGGTACCGTTTAACATGTTTGGAGGATTCTCTCTCTCTCTCTC  250

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTG  283
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCGGTGTGTGTGTGTGTGTGTGTG  300

seq1  TGTGTGTGTGTGTGTGTGTGAAATGTGGCATGCTGGACATACTATGATGT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGAAATGTGGCATGCTGGACATACTATGATGT  350

seq1  GTGAAGCTGATGGATTATCTCAGTCATGAAACTTTATATGAGCTTTTATA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCTGATGGATTATCTCAGTCATGAAACTTTATATGAGCTTTTATA  400

seq1  ATTGGTAAGTCAAGATAACTTATATTTTTATTTTTTTCTTATATTTTGAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAAGTCAAGATAACTTATATTTTTATTTTTTTCTTATATTTTGAA  450

seq1  TATCATATTTAAAATAAATAATAATTGAATAACAGTAAGATATGTAAATA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATTTAAAATAAATAATAATTGAATAACAGTAAGATATGTAAATA  500

seq1  ATTCTTTAAAAATAATAAAATATGCAACAAATAAAATACAACATTTAAAC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAAAAATAATAAAATATGCAACAAATAAAATACAACATTTAAAC  550

seq1  ATATCTTATTTTTTTTTAATTTGATGTGGCTGAAGAGGTGGTTCAATGTT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTATTTTTTTTTAATTTGATGTGGCTGAAGAGGTGGTTCAATGTT  600

seq1  TGGGGGCATTTGTTGTTCTTCCAGAGGATCCAGGTTCAATTCACTGCACC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCATTTGTTGTTCTTCCAGAGGATCCAGGTTCAATTCACTGCACC  650

seq1  CACATGGAGGCTCCATGAGGTCTGCATGCATGTGCTGTGCAGATATAAAT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAGGCTCCATGAGGTCTGCATGCATGTGCTGTGCAGATATAAAT  700

seq1  GTAAGCAAAACTCCCACATACATAAACCCGTCCCCATAGGCACGCCTCTT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAAAACTCCCACATACATAAACCCGTCCCCATAGGCACGCCTCTT  750

seq1  GTGCCAATCATTATTGAAAGTCTTGATCATAAGCTGGCTACCAGTACTCA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAATCATTATTGAAAGTCTTGATCATAAGCTGGCTACCAGTACTCA  800

seq1  CAAGCACCAGGATCAATATGAGATTGTACCTTACTCACATCCCAACCAGC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCAGGATCAATATGAGATTGTACCTTACTCACATCCCAACCAGC  850

seq1  GGTTATGGCACTGATGCCGTGTCTTGGTTACCTAAGGCCTCTGTGACATA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGGCACTGATGCCGTGTCTTGGTTACCTAAGGCCTCTGTGACATA  900

seq1  CACCATAGACAGGATGGATTAAGGAGTAGGCATGTATAGCACATAATTCT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAGACAGGATGGATTAAGGAGTAGGCATGTATAGCACATAATTCT  950

seq1  GGATGGTGGAAGTTCAGTAAAGACAGGCGTGTGCAAGAGAGAATGAGAGT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTGGAAGTTCAGTAAAGACAGGCGTGTGCAAGAGAGAATGAGAGT  1000

seq1  GAGAGCAAGAGCAAGTGAGAACCCATATCCCCAAGTTCTTTTATAACCAA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAGAGCAAGTGAGAACCCATATCCCCAAGTTCTTTTATAACCAA  1050

seq1  CATTAACCCCCTCACAACAGAATAGCTCTTAGGGCTGGAGCTGGAGCTAA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACCCCCTCACAACAGAATAGCTCTTAGGGCTGGAGCTGGAGCTAA  1100

seq1  GTGGGTAGCAGGCTTTGCTTAGCACATATGACCCTGAATTC  1124
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAGCAGGCTTTGCTTAGCACATATGACCCTGAATTC  1141