BAC Information

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BAC

Clone NameB6Ng01-244L07
Chromosome5 (Build37)
Map Location 96,640,457 - 96,783,927
singlet/doubletdoublet
Overlap geneMrpl1
Upstream geneLOC100041296, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559
Downstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244L07.bB6Ng01-244L07.g
ACCGA053774GA053775
length1,1721,122
definitionB6Ng01-244L07.b B6Ng01-244L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,782,754 - 96,783,927)(96,640,457 - 96,641,591)
sequence
gaattccttcagccaaggctgctgagccatattcttggctgtctcttcag
aacataacatgatttcttagcagtcacgtctgaatcataccatagtttgt
aatttagatgtgattaaaaaaattgttccaaatcaataagacctcattac
aatttttcctaaaagtccttctcttaatttctctctttccatttctcatt
ttacgctaaccaacaggggggaaaaaaaaccatgttgtgttttctataaa
ttttctttgaaatatgctcagttacaggaccaaacagattgcttagcaac
acttttccacacaaccttcagacacagctcaggtaaaatgtttgacatca
tatagcaaggattccctttcctcttgctgggaataaaataacacattcaa
gagactaagaacaacagtttttaatacacagctctggagaagggtatgcc
agcatatagaaaaggcaaaaatgtccagtggttttttaaattcctagatt
acaaaaaaatctgcattttcttctaagccaggacttgtccccaagtcccc
atcagactggcttcggacaaaagcatcacccagtgagcactctcaagtgt
tgaggctgtcccacccttgtctgaccctgagctcaggccctcacagaccc
tgtagcctctgagtcctgagacaagcacgtgccagctgcgaggggaggag
acacagcgcaccctgcttatctatgactcccatgaactctaagtgcatct
cattgggaatggaccgtgacaatctatttcttacatcccagtttttgaaa
ttatgtttttggcctcctcctgagttcccgctgggcagagcactaaacat
tgacacttcttccaagagtcttttgaaagcaacccatgcctctcctactg
cttctccaccttcttcagcgtaaccctgttagccatttccaaaacaaccc
ccacaagttaaggtgcttattaagtattactttcactctgacatggaatt
cttataatctcctacagatactgtatacatcacttgtaataactttgctg
gtgcaaataacatatatgtatgtctctgtctagagttgaaaacctaagtc
agcctcacttggggctgaattcaggaatccttggaatgtggctctaattc
tgcagcccagaagagagggaat
gaattctataatgtgttttaaattgatgtatccttgcttactaataaggt
aatactactcagtggacagctttcacactattggcatttcctttctagtt
tgaagtctttttatccttcttgtttacttttcaattgtgttgctctttca
cactcaagatacaactcgtttgtccagtgaacatgttgcaaatatactct
acccattttagattcatcttttcactgtatgtgcatgcgggaaggtatgt
gtgtacatgtgtgtggatgcatgtagtgtgatatttctcataacttttcc
atcccattgtttttgaagcagggtctgtcactaggacctggagtgtgttg
attagcctcgtctggttggccaagtgagtcacagcgatcagccttctggt
tttggaatttggaggaagagtcactgtgctcagtgttttttacatgtgtg
gtggggtgaatgcaggccctcatgcttgcatggcaagcactttgctgata
gtctcctcagcctcaattcttaatttttaaaaagtatatttgataagcag
aaggtttgttttttggatttttttgtcactttatttttttttattagata
ttttctttatttgcatttcaaatgctatcccgaaagttccctattacccc
ccctcacctgccctgctctcctacccacctactcccacttcttggccctg
gcattcccctgtactggggcatataaagtttgcaagatcaaggggcctct
cttcccaatgatggccgactaggccatctaagcagaagtttttaacattt
agtaaactactttttgtttagtgcctttgggccttgtttgtgaaactgtt
cctcccctaaaggttattaggacatttttctttatcctggaaggctttta
aatattagcattcactatgagtgggttttttcttcgtttgttgtgggaat
ttggatgattttatgtcaagcttttttttgtttactaattgtctttctgt
attgtaccactaccaacataaagaactatcataaaaaatgcatttttcaa
aaattgaaattttaattttgtttcagagcaagagttttcttccattaaca
ggcttgaatgtcctggacttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96782754_96783927
seq2: B6Ng01-244L07.b_46_1217 (reverse)

seq1  ATTCCC-CTCT--GGGCCTGCAGAAT--GAGCACAAATCTAAGGACTCCT  45
      |||||| ||||   || |||||||||  ||||   | || ||||| ||||
seq2  ATTCCCTCTCTTCTGGGCTGCAGAATTAGAGCCACATTCCAAGGATTCCT  50

seq1  TGATTCAGCCC--AGTGAAGCTGACTTAGGGTTTTCAACCTCTAGGACCA  93
        |||||||||  ||||| ||||||||| ||||||||| ||||||   ||
seq2  GAATTCAGCCCCAAGTGAGGCTGACTTA-GGTTTTCAA-CTCTAG--ACA  96

seq1  GAAGACAATACATATATGTTATTTGCA-CAGCCAAGTTATTACAAGTGAT  142
      | |||| |||||||||||||||||||| |||| |||||||||||||||||
seq2  G-AGAC-ATACATATATGTTATTTGCACCAGCAAAGTTATTACAAGTGAT  144

seq1  GGTTATTACAGTATCTGTAGGAGATTAATAAGAATTTCCATGTCAGGAGT  192
      |  || |||||||||||||||||||| ||||||| |||||||||| ||||
seq2  G--TA-TACAGTATCTGTAGGAGATT-ATAAGAA-TTCCATGTCA-GAGT  188

seq1  G-AAGTAATACTTAATAAGCACCTTAACTTGT-GGGGTTGTTTTGGAAAT  240
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAAGTAATACTTAATAAGCACCTTAACTTGTGGGGGTTGTTTTGGAAAT  238

seq1  GGCTAACAGGGTTACGCTGAAGAAGGTGGAGAAGCAGTAGGAGAGGCATG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACAGGGTTACGCTGAAGAAGGTGGAGAAGCAGTAGGAGAGGCATG  288

seq1  GGTTGCTTTCAAAAGACTCTTGGAAGAAGTGTCAATGTTTAGTGCTCTGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTTCAAAAGACTCTTGGAAGAAGTGTCAATGTTTAGTGCTCTGC  338

seq1  CCAGCGGGAACTCAGGAGGAGGCCAAAAACATAATTTCAAAAACTGGGAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGGGAACTCAGGAGGAGGCCAAAAACATAATTTCAAAAACTGGGAT  388

seq1  GTAAGAAATAGATTGTCACGGTCCATTCCCAATGAGATGCACTTAGAGTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAATAGATTGTCACGGTCCATTCCCAATGAGATGCACTTAGAGTT  438

seq1  CATGGGAGTCATAGATAAGCAGGGTGCGCTGTGTCTCCTCCCCTCGCAGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGTCATAGATAAGCAGGGTGCGCTGTGTCTCCTCCCCTCGCAGC  488

seq1  TGGCACGTGCTTGTCTCAGGACTCAGAGGCTACAGGGTCTGTGAGGGCCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACGTGCTTGTCTCAGGACTCAGAGGCTACAGGGTCTGTGAGGGCCT  538

seq1  GAGCTCAGGGTCAGACAAGGGTGGGACAGCCTCAACACTTGAGAGTGCTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGGGTCAGACAAGGGTGGGACAGCCTCAACACTTGAGAGTGCTC  588

seq1  ACTGGGTGATGCTTTTGTCCGAAGCCAGTCTGATGGGGACTTGGGGACAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGATGCTTTTGTCCGAAGCCAGTCTGATGGGGACTTGGGGACAA  638

seq1  GTCCTGGCTTAGAAGAAAATGCAGATTTTTTTGTAATCTAGGAATTTAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGCTTAGAAGAAAATGCAGATTTTTTTGTAATCTAGGAATTTAAA  688

seq1  AAACCACTGGACATTTTTGCCTTTTCTATATGCTGGCATACCCTTCTCCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTGGACATTTTTGCCTTTTCTATATGCTGGCATACCCTTCTCCA  738

seq1  GAGCTGTGTATTAAAAACTGTTGTTCTTAGTCTCTTGAATGTGTTATTTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGTATTAAAAACTGTTGTTCTTAGTCTCTTGAATGTGTTATTTT  788

seq1  ATTCCCAGCAAGAGGAAAGGGAATCCTTGCTATATGATGTCAAACATTTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGCAAGAGGAAAGGGAATCCTTGCTATATGATGTCAAACATTTT  838

seq1  ACCTGAGCTGTGTCTGAAGGTTGTGTGGAAAAGTGTTGCTAAGCAATCTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGCTGTGTCTGAAGGTTGTGTGGAAAAGTGTTGCTAAGCAATCTG  888

seq1  TTTGGTCCTGTAACTGAGCATATTTCAAAGAAAATTTATAGAAAACACAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCCTGTAACTGAGCATATTTCAAAGAAAATTTATAGAAAACACAA  938

seq1  CATGGTTTTTTTTCCCCCCTGTTGGTTAGCGTAAAATGAGAAATGGAAAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTTTTTTCCCCCCTGTTGGTTAGCGTAAAATGAGAAATGGAAAG  988

seq1  AGAGAAATTAAGAGAAGGACTTTTAGGAAAAATTGTAATGAGGTCTTATT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATTAAGAGAAGGACTTTTAGGAAAAATTGTAATGAGGTCTTATT  1038

seq1  GATTTGGAACAATTTTTTTAATCACATCTAAATTACAAACTATGGTATGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGAACAATTTTTTTAATCACATCTAAATTACAAACTATGGTATGA  1088

seq1  TTCAGACGTGACTGCTAAGAAATCATGTTATGTTCTGAAGAGACAGCCAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACGTGACTGCTAAGAAATCATGTTATGTTCTGAAGAGACAGCCAA  1138

seq1  GAATATGGCTCAGCAGCCTTGGCTGAAGGAATTC  1174
      ||||||||||||||||||||||||||||||||||
seq2  GAATATGGCTCAGCAGCCTTGGCTGAAGGAATTC  1172

seq1: chr5_96640457_96641591
seq2: B6Ng01-244L07.g_66_1187

seq1  GAATTCTATAATGTGTTTTAAATTGATGTATCCTTGCTTACTAATAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAATGTGTTTTAAATTGATGTATCCTTGCTTACTAATAAGGT  50

seq1  AATACTACTCAGTGGACAGCTTTCACACTATTGGCATTTCCTTTCTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTACTCAGTGGACAGCTTTCACACTATTGGCATTTCCTTTCTAGTT  100

seq1  TGAAGTCTTTTTATCCTTCTTGTTTACTTTTCAATTGTGTTGCTCTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTTTTTATCCTTCTTGTTTACTTTTCAATTGTGTTGCTCTTTCA  150

seq1  CACTCAAGATACAACTCGTTTGTCCAGTGAACATGTTGCAAATATACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGATACAACTCGTTTGTCCAGTGAACATGTTGCAAATATACTCT  200

seq1  ACCCATTTTAGATTCATCTTTTCACTGTATGTGCATGCGGGAAGGTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTTAGATTCATCTTTTCACTGTATGTGCATGCGGGAAGGTATGT  250

seq1  GTGTACATGTGTGTGGATGCATGTAGTGTGATATTTCTCATAACTTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACATGTGTGTGGATGCATGTAGTGTGATATTTCTCATAACTTTTCC  300

seq1  ATCCCATTGTTTTTGAAGCAGGGTCTGTCACTAGGACCTGGAGTGTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTGTTTTTGAAGCAGGGTCTGTCACTAGGACCTGGAGTGTGTTG  350

seq1  ATTAGCCTCGTCTGGTTGGCCAAGTGAGTCACAGCGATCAGCCTTCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCTCGTCTGGTTGGCCAAGTGAGTCACAGCGATCAGCCTTCTGGT  400

seq1  TTTGGAATTTGGAGGAAGAGTCACTGTGCTCAGTGTTTTTTACATGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATTTGGAGGAAGAGTCACTGTGCTCAGTGTTTTTTACATGTGTG  450

seq1  GTGGGGTGAATGCAGGCCCTCATGCTTGCATGGCAAGCACTTTGCTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGAATGCAGGCCCTCATGCTTGCATGGCAAGCACTTTGCTGATA  500

seq1  GTCTCCTCAGCCTCAATTCTTAATTTTTAAAAAGTATATTTGATAAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCAGCCTCAATTCTTAATTTTTAAAAAGTATATTTGATAAGCAG  550

seq1  AAGGTTTGTTTTTTGGATTTTTTTGTCACTTTATTTTTTTTTATTAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTGTTTTTTGGATTTTTTTGTCACTTTATTTTTTTTTATTAGATA  600

seq1  TTTTCTTTATTTGCATTTCAAATGCTATCCCGAAAGTTCCCTATTACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATTTGCATTTCAAATGCTATCCCGAAAGTTCCCTATTACCCC  650

seq1  CCCTCACCTGCCCTGCTCTCCTACCCACCTACTCCCACTTCTTGGCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACCTGCCCTGCTCTCCTACCCACCTACTCCCACTTCTTGGCCCTG  700

seq1  GCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGATCAAGGGGCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGATCAAGGGGCCTCT  750

seq1  CTTCCCAATGATGGCCGACTAGGCCATCTAAGCAGAAGTTTTTAACATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAATGATGGCCGACTAGGCCATCTAAGCAGAAGTTTTTAACATTT  800

seq1  AGTAAACTACTTTTTGTTTAGTGCCTTTGGGCCTTGTTTGTGAAACTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTACTTTTTGTTTAGTGCCTTTGGGCCTTGTTTGTGAAACTGTT  850

seq1  CCTCCCCTAAAGGTTATTAGGACATTTTTCTTTATCCTGGAAGGCTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTAAAGGTTATTAGGACATTTTTCTTTATCCTGGAAGGCTTTTA  900

seq1  AATATTAGCATTCACCTATGAGTGGGTTTTTTTCTTCGTTTGTTGTGGGA  950
      |||||||||||||| ||||||||||| |||||||||||||||||||||| 
seq2  AATATTAGCATTCA-CTATGAGTGGG-TTTTTTCTTCGTTTGTTGTGGG-  947

seq1  AATTTGGATGATTTTATTGTCAAGCTTTTTTTTTTTTTTGTTTTACTAAT  1000
      |||||||||||||||| ||||||||||||||||        |||||||||
seq2  AATTTGGATGATTTTA-TGTCAAGCTTTTTTTT-------GTTTACTAAT  989

seq1  CTGTCTTTCTGTATTTGTACCACTACCAACATAAAGAACTATCAT-AAAA  1049
       |||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  -TGTCTTTCTGTA-TTGTACCACTACCAACATAAAGAACTATCATAAAAA  1037

seq1  ATGCATTTTTTAAAAAATGGATTTTTAAATTTTTGTTTC-CAGACAGAG-  1097
      |||||||||| ||||| || | ||||||  |||||||||  ||  |||| 
seq2  ATGCATTTTTCAAAAATTGAAATTTTAA--TTTTGTTTCAGAGCAAGAGT  1085

seq1  TTTCTCCCCATAACAGCCCTAGATGTCCTGGAACTTAC  1135
      ||||| ||  |||||| | |  ||||||||| ||||||
seq2  TTTCTTCCATTAACAGGCTTGAATGTCCTGG-ACTTAC  1122