BAC Information

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BAC

Clone NameB6Ng01-245E24
Chromosome5 (Build37)
Map Location 122,773,615 - 122,878,304
singlet/doubletdoublet
Overlap genePptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7
Upstream geneAU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1
Downstream geneAtp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245E24.bB6Ng01-245E24.g
ACCGA054227GA054228
length1,0981,156
definitionB6Ng01-245E24.b B6Ng01-245E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,877,206 - 122,878,304)(122,773,615 - 122,774,766)
sequence
gaattcccagtggaaggccgcactttggaagtcttacttaaggctttctt
ctgctgtaaagccatggcgtacttactcacagcattgcggtactccttat
cgtgaaacagagagtctgcatgatacaccaagagctggtacttctgcgac
ggggaaaacagctcactagaacataaaggaaacaagtcctacatgggtta
ttttgaaaattagaaagagcaccttggtgtacctaagcctaccacaaaaa
ccttctatcacgccagcttgcaaaaaaacatgaatacagccgggcgtggt
ggtgcacacctttaatcccagcactgaggaggcagaggcaggcggatttc
tgagttcaaggccagcctggtctacaaagtgagttccagagaaaccctgt
ctcgaaaaaccaaaaagaaaaaaaaatattccttaaatttaagtggctta
atgagaggcacagcatttgaacaccatgcaaatatggccaaaacatctaa
aacactatcttactgtattgtggttttgtacaatgtgtgttttcttacta
cagaagctaatgatacctataaatcaatacaatgaacaaatggagaacac
aggctttccttcccatttttacatccttccatcttttctggctttttgag
acagcagctcacctgtagtccaggtagccctgaacttacagcaatcttcc
tgcttctgccttggaagtgatgggtcacagaatggaccgctatgcctact
caataagacctcttaatttagtactgttttacatacacctctattatctt
agttaacatcaaattttatggataatattgccaaaggatagcaataatta
caaaaaagctagagactctagaaagaaaatttaccactctgaattatttc
attgaagaaactcacaaaacagctcctgcaaacttcaaataccaaagaaa
aaagccagtaagagaacacaattggaaagccagaatgcaggtgatacgga
ttagtctatctagagtcattactgtgatttatatgcgtaatgtgcaacag
tgcacgcttgcctgcccagaagagaaagttggaacacaacacccccct
gaattcattccaggtatgtgtctgggttgggctgggtctggagagactgg
gtataagctccaaggcaggagagtgccctccaccgctgccgctgccgctg
cctttgttctggatagagtagccagcagatggaaacagggcaggagtggt
ttggaggcggctggcgggattggcgagattggctgaagctgtgcgtgtct
gagtaggttcatggctctgtgtcactgtacagcagctctctttggcaaag
ttgtaacactcactttcttggaaattgtcacagttttacatttaaaaaaa
tttgcaatagcaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaacataa
aacaacataatatgaaacagaagacatttggattctatttctttcaaaaa
agtaaatttatcacaaaattgaacttctcaataaagcagtgtccatgtca
aaacataactgttagtaggtagtctgtggcaacgatgagtaaatgacgaa
gcaagtctgagtctgtgtgtactgatgcgctgccttttctgttgagacta
tcatcgtgcgtcctaccagaggcaatgacccgaatcgatgttggaaatat
aacttatgcaggaatagttctgtaaatacatttaaataaactgtaaagat
atttaataaatatagtatttatactatttgccactcctttggtttgaatg
gacaggaactgagacacccaccctcagctcccagattcttggtctgcctg
acagtgagccagcacctcggagctgtgtctgtggtgctttactgtctgag
catggaccggaatggctagttatcaacagctacttaccttcctcagaaat
tcaccaaaaccgactgacaattgagtgtaaaatagagggttttgtagctg
gggtgttgtgccttccagacagtactgagtgaagaagctaccaaaaacac
tgctggggggggaggaggtcggtagcagagcactatgctaggatgtgcaa
ggccctggattcatccagcacaacaacgcacacttgtgctccactggagt
gcaaagctctgggtgcagcctagtgtcgtatgtacactgttcctggagcc
gaaacttgtgctgcactagcgtctcgctgaatcttaggtgccttgggagc
ctgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122877206_122878304
seq2: B6Ng01-245E24.b_42_1139 (reverse)

seq1  AGGGGGGTG-TGTG-TCCAACCTTCTCTTCTGGGCAG--CAGCGTGCACC  46
      ||||||||| |||| |||||| |||||||||||||||   ||||||||| 
seq2  AGGGGGGTGTTGTGTTCCAACTTTCTCTTCTGGGCAGGCAAGCGTGCACT  50

seq1  TGTGCACA-TACGCATATAAATCACAGTAATGACTCTAAGATAGACTAAT  95
        |||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  GTTGCACATTACGCATATAAATCACAGTAATGACTCT-AGATAGACTAAT  99

seq1  CCGTTATCACTCTGCCATTCTGGCTTTCCAATTGTGTTCTCTTACTGGCT  145
      ||| |||||| ||| |||||||||||||||||||||||||||||||||||
seq2  CCG-TATCAC-CTG-CATTCTGGCTTTCCAATTGTGTTCTCTTACTGGCT  146

seq1  TTTTTCTTTGGTATTTGAAGTTTGCAGGAGCCTGTTTTGTTGAGTTTC-T  194
      |||||||||||||||||||||||||||||| |||||||| |||||||| |
seq2  TTTTTCTTTGGTATTTGAAGTTTGCAGGAG-CTGTTTTG-TGAGTTTCTT  194

seq1  CAATGAAATAATTCAGAGTGGTAAATTTTCTTTCTAGAGTCTCTAGCTTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAATAATTCAGAGTGGTAAATTTTCTTTCTAGAGTCTCTAGCTTT  244

seq1  TTTGTAATTATTGCTATCCTTTGGCAATATTATCCATAAAATTTGATGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATTATTGCTATCCTTTGGCAATATTATCCATAAAATTTGATGTT  294

seq1  AACCTAAGATAATAGAGGTGTATGTAAAACAGTACTAAATTAAGAGGTCT  344
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-CTAAGATAATAGAGGTGTATGTAAAACAGTACTAAATTAAGAGGTCT  343

seq1  TATTGAGTAGGCATAGCGGTCCATTCTGTGACCCATCACTTCCAAGGCAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTAGGCATAGCGGTCCATTCTGTGACCCATCACTTCCAAGGCAG  393

seq1  AAGCAGGAAGATTGCTGTAAGTTCAGGGCTACCTGGACTACAGGTGAGCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAAGATTGCTGTAAGTTCAGGGCTACCTGGACTACAGGTGAGCT  443

seq1  GCTGTCTCAAAAAGCCAGAAAAGATGGAAGGATGTAAAAATGGGAAGGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCAAAAAGCCAGAAAAGATGGAAGGATGTAAAAATGGGAAGGAA  493

seq1  AGCCTGTGTTCTCCATTTGTTCATTGTATTGATTTATAGGTATCATTAGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGTTCTCCATTTGTTCATTGTATTGATTTATAGGTATCATTAGC  543

seq1  TTCTGTAGTAAGAAAACACACATTGTACAAAACCACAATACAGTAAGATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGTAAGAAAACACACATTGTACAAAACCACAATACAGTAAGATA  593

seq1  GTGTTTTAGATGTTTTGGCCATATTTGCATGGTGTTCAAATGCTGTGCCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAGATGTTTTGGCCATATTTGCATGGTGTTCAAATGCTGTGCCT  643

seq1  CTCATTAAGCCACTTAAATTTAAGGAATATTTTTTTTTCTTTTTGGTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAGCCACTTAAATTTAAGGAATATTTTTTTTTCTTTTTGGTTTT  693

seq1  TCGAGACAGGGTTTCTCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACAGGGTTTCTCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGA  743

seq1  ACTCAGAAATCCGCCTGCCTCTGCCTCCTCAGTGCTGGGATTAAAGGTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATCCGCCTGCCTCTGCCTCCTCAGTGCTGGGATTAAAGGTGT  793

seq1  GCACCACCACGCCCGGCTGTATTCATGTTTTTTTGCAAGCTGGCGTGATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCACGCCCGGCTGTATTCATGTTTTTTTGCAAGCTGGCGTGATA  843

seq1  GAAGGTTTTTGTGGTAGGCTTAGGTACACCAAGGTGCTCTTTCTAATTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTTTTGTGGTAGGCTTAGGTACACCAAGGTGCTCTTTCTAATTTT  893

seq1  CAAAATAACCCATGTAGGACTTGTTTCCTTTATGTTCTAGTGAGCTGTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACCCATGTAGGACTTGTTTCCTTTATGTTCTAGTGAGCTGTTT  943

seq1  TCCCCGTCGCAGAAGTACCAGCTCTTGGTGTATCATGCAGACTCTCTGTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGTCGCAGAAGTACCAGCTCTTGGTGTATCATGCAGACTCTCTGTT  993

seq1  TCACGATAAGGAGTACCGCAATGCTGTGAGTAAGTACGCCATGGCTTTAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGATAAGGAGTACCGCAATGCTGTGAGTAAGTACGCCATGGCTTTAC  1043

seq1  AGCAGAAGAAAGCCTTAAGTAAGACTTCCAAAGTGCGGCCTTCCACTGGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGAAAGCCTTAAGTAAGACTTCCAAAGTGCGGCCTTCCACTGGG  1093

seq1  AATTC  1099
      |||||
seq2  AATTC  1098

seq1: chr5_122773615_122774766
seq2: B6Ng01-245E24.g_63_1218

seq1  GAATTCATTCCAGGTATGTGTCTGGGTTGGGCTGGGTCTGGAGAGACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCAGGTATGTGTCTGGGTTGGGCTGGGTCTGGAGAGACTGG  50

seq1  GTATAAGCTCCAAGGCAGGAGAGTGCCCTCCACCGCTGCCGCTGCCGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGCTCCAAGGCAGGAGAGTGCCCTCCACCGCTGCCGCTGCCGCTG  100

seq1  CCTTTGTTCTGGATAGAGTAGCCAGCAGATGGAAACAGGGCAGGAGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTCTGGATAGAGTAGCCAGCAGATGGAAACAGGGCAGGAGTGGT  150

seq1  TTGGAGGCGGCTGGCGGGATTGGCGAGATTGGCTGAAGCTGTGCGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCGGCTGGCGGGATTGGCGAGATTGGCTGAAGCTGTGCGTGTCT  200

seq1  GAGTAGGTTCATGGCTCTGTGTCACTGTACAGCAGCTCTCTTTGGCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGTTCATGGCTCTGTGTCACTGTACAGCAGCTCTCTTTGGCAAAG  250

seq1  TTGTAACACTCACTTTCTTGGAAATTGTCACAGTTTTACATTTAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACACTCACTTTCTTGGAAATTGTCACAGTTTTACATTTAAAAAAA  300

seq1  TTTGCAATAGCAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATAGCAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAACATAA  350

seq1  AACAACATAATATGAAACAGAAGACATTTGGATTCTATTTCTTTCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACATAATATGAAACAGAAGACATTTGGATTCTATTTCTTTCAAAAA  400

seq1  AGTAAATTTATCACAAAATTGAACTTCTCAATAAAGCAGTGTCCATGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTTATCACAAAATTGAACTTCTCAATAAAGCAGTGTCCATGTCA  450

seq1  AAACATAACTGTTAGTAGGTAGTCTGTGGCAACGATGAGTAAATGACGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAACTGTTAGTAGGTAGTCTGTGGCAACGATGAGTAAATGACGAA  500

seq1  GCAAGTCTGAGTCTGTGTGTACTGATGCGCTGCCTTTTCTGTTGAGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCTGAGTCTGTGTGTACTGATGCGCTGCCTTTTCTGTTGAGACTA  550

seq1  TCATCGTGCGTCCTACCAGAGGCAATGACCCGAATCGATGTTGGAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGTGCGTCCTACCAGAGGCAATGACCCGAATCGATGTTGGAAATAT  600

seq1  AACTTATGCAGGAATAGTTCTGTAAATACATTTAAATAAACTGTAAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGCAGGAATAGTTCTGTAAATACATTTAAATAAACTGTAAAGAT  650

seq1  ATTTAATAAATATAGTATTTATACTATTTGCCACTCCTTTGGTTTGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAAATATAGTATTTATACTATTTGCCACTCCTTTGGTTTGAATG  700

seq1  GACAGGAACTGAGACACCCACCCTCAGCTCCCAGATTCTTGGTCTGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAACTGAGACACCCACCCTCAGCTCCCAGATTCTTGGTCTGCCTG  750

seq1  ACAGTGAGCCAGCACCTCGGAGCTGTGTCTGTGGTGCTTTACTGTCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGCCAGCACCTCGGAGCTGTGTCTGTGGTGCTTTACTGTCTGAG  800

seq1  CATGGACCGGAATGGCTAGTTATCAACAGCTACTTACCTTCCTCAGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACCGGAATGGCTAGTTATCAACAGCTACTTACCTTCCTCAGAAAT  850

seq1  TCACCAAAACCGACTGACAATTGAGTGTAAAATAGAGGGTTTTGTAGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAAACCGACTGACAATTGAGTGTAAAATAGAGGGTTTTGTAGCTG  900

seq1  GGGTGTTGTGCCTTCCAGACAGTACTGAGTGAAGAAGCTACCAAAAACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGTGCCTTCCAGACAGTACTGAGTGAAGAAGCTACCAAAAACAC  950

seq1  TGCT-GGGGGGGAGGAGGTCGGTAGCAGAGCACTATGCTAGGATGTGCAA  999
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGGGGGAGGAGGTCGGTAGCAGAGCACTATGCTAGGATGTGCAA  1000

seq1  GGCCCCGGATTCCATCCCAGCACCACACACGCACACCTTGTGCTCCACTG  1049
      ||||| ||||| ||| ||||||| ||| ||||||| ||||||||||||||
seq2  GGCCCTGGATT-CAT-CCAGCACAACA-ACGCACA-CTTGTGCTCCACTG  1046

seq1  GAAGTGCAAAGCTCTGGGTGCAG-CTAGTGTCGTAGTGT-CACTGT--CT  1095
      | ||||||||||||||||||||| ||||||||||| ||| ||||||  ||
seq2  G-AGTGCAAAGCTCTGGGTGCAGCCTAGTGTCGTA-TGTACACTGTTCCT  1094

seq1  TGGGC--AGACTGGTGCTGCAGCCAGGCTGCTGCTG-ATC-TAGGTG-CT  1140
       | ||  | ||| |||||||| | ||  |   |||| ||| |||||| ||
seq2  GGAGCCGAAACTTGTGCTGCA-CTAGCGTCTCGCTGAATCTTAGGTGCCT  1143

seq1  TGGGAG-CTGCAT  1152
      |||||| ||||||
seq2  TGGGAGCCTGCAT  1156