BAC Information

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BAC

Clone NameB6Ng01-245F19
Chromosome5 (Build37)
Map Location 18,688,515 - 18,810,246
singlet/doubletdoublet
Overlap gene4921504A21Rik, Magi2
Upstream geneGnai1, LOC100041818, LOC668167
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245F19.bB6Ng01-245F19.g
ACCGA054265GA054266
length1,1641,096
definitionB6Ng01-245F19.b B6Ng01-245F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,809,071 - 18,810,246)(18,688,515 - 18,689,622)
sequence
gaattcatctgttttaaaaatatctgtattttaaattctttactttctaa
ttatcttggatataattataaatttctcccagatattaagaaaatgtatt
tctaggttacctagaattaagtcactgtgtttgtttcgaaaatagtaatg
cattctatgagtgaaaattatcttcatgtatataatggagaaggtaaatg
gtgtctttgataagtcttgcctactgttgctctctcaaaaccggttggat
tttatacatccagagtttttcccttttcccagtgtccacgtcatgggacc
tcaggtcttgtgagaccccaggcaagcagggaaattttctagaaaggaaa
atatttgtgtgtataagagaccacttatataacaaatgtattcatgacaa
ttgtgaccagaatttccctgaacattcaggaaatattgtggacaatatca
tcatggaacatccattttaataagcagatctcaaatattcattttattgt
aggcaataaaagaatcttaatgtattaagtacaaattccttacccaacag
actagaaaaacactaaaaataagaattaattttaatatttacatgttcaa
tgagcaaaaacatagtagtaaaagagaaaatccccatatggcttccaacc
acctcagctaacaaaactgccctttagacatctaagggtacatgactcct
aagcattagtggcttattagaattattagaatcccgcaatacctctcctg
ggcatatatccagaagatgttccaaccggtaagaaggacacatgctccac
tatgttcatagcagccttatttataatagccagaagctggaaagaaccca
gatgcccatcaatagaggaatggatacagaaaatgtgggtacatttacac
aatggagtactactcagctattaaaaagaatgaatttatgaaattcctag
gcaaatggatggacctggagagcatcatccctgagtgagtaacccaaaca
caaaagacttacacaatatgtactccactgatagtgatattaaccagaaa
ctagatacccaagaatataagaatacatttgctaaacacatgaactcaag
gaagacgagacccaagtgtggaactttgcattctagaattggaacaaacc
ccaatggaagagtt

gaattccttcaagtatgcattggatgacattgccatctgataaggtaaat
tcaggtgccactaggttgagcaaggggtttagaatatatccttttactgt
atagggggttcttttgttattcctacagacgtgaaagttcatagctggga
ggtaatactacttgtgatattattgttttgtttctgttttcattttcatt
ttccaagacagagtttctctgtgtagctatggctgtcctggaacttactc
tgtaaaccagactggcatcaaagtcacagatctgcctcttgagtgctggg
gttaaaggtatgtgttaaccctgcctagttttgtgttttcagctggcagg
tggcttcagctagactctcagatgagcgactcccttctaggactttctct
gcttcatcaccatcacagaagaacacaaggagccctgcagattcagggat
tcgggcagaaaatatgaacaggaatgtgcctacgagcattgaagtgggaa
ggggtggttatatgcagccacttccaacagagaaccaggtcaaagccgga
gtggacagtgttccctgaagagtcacgtgcagttttttgtcatggagtca
tggtacttaaaataactgtgtgtgacttcataactgaatgtgaagatatt
ctttatctccaaattcagaggcaaaatgagaaaaggccaacatattcaca
tctatttaaacaaaagcttgcttaacaaaaaattcctggtgtcaattaaa
atgaaaagtgaactgaaaagcaaagatctacattatgtcacaaagggcta
ctatatataaagtgtaaaaatcatctaatagaaaaacaaggcttcataaa
aaacatttcttatagaaagatgagtcttacacgcgttcgcgaccgggcca
ggaaagacgcaacaaaccgggaatcttctgcggcaaaagcttttatgctt
acatcttcagagccagagagcagagagcagagagcaagagagcaagagag
cagagcaagagagagcagaaagcagaaaaagaacaaggacagaaatcaga
gcagagagagaaaagacaggacagaagcaggagagagaatggcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18809071_18810246
seq2: B6Ng01-245F19.b_49_1212 (reverse)

seq1  AACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGAAAGGGCAAAGTGT  50
      |||| ||||||| || | |||||| |||||||| ||||   ||||||| |
seq2  AACT-CTTCCATTGG-GGTTTGTT-CCAATTCT-AGAA--TGCAAAGT-T  43

seq1  CCACACTTTGGTCTTCGTTCTTCTTGAGTTTCATGTGTTTAGCAAATTGT  100
      |||||||| |||| ||||  | |||||| ||||||||||||||||| |||
seq2  CCACACTTGGGTC-TCGTCTTCCTTGAG-TTCATGTGTTTAGCAAA-TGT  90

seq1  A-TCTTATA-TCTTGGGTATCCTAAGTTTCTGGGTTAATATCCACTTATC  148
      | ||||||| |||||||||||   ||||||| ||||||||| ||| ||||
seq2  ATTCTTATATTCTTGGGTATC--TAGTTTCT-GGTTAATAT-CAC-TATC  135

seq1  AGT-GAGTACATATTGTGTAAGTTCTTTTGTGTTTGGGTTACCTCACTCA  197
      ||| |||||||||||||||||| |||||||||||||||||| ||||||||
seq2  AGTGGAGTACATATTGTGTAAG-TCTTTTGTGTTTGGGTTA-CTCACTCA  183

seq1  -GGATGATGCTCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTC  246
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGATGCTCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTC  233

seq1  ATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTA-CCACATT  295
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCCACATT  283

seq1  TTCTGTATCCATTCCTCTATTGATGGGCATCTGGGTTCTTTCCAGCTTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATCCATTCCTCTATTGATGGGCATCTGGGTTCTTTCCAGCTTCT  333

seq1  GGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCT  383

seq1  TACCGGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGA  433

seq1  TTCTAATAATTCTAATAAGCCACTAATGCTTAGGAGTCATGTACCCTTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATAATTCTAATAAGCCACTAATGCTTAGGAGTCATGTACCCTTAG  483

seq1  ATGTCTAAAGGGCAGTTTTGTTAGCTGAGGTGGTTGGAAGCCATATGGGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAAAGGGCAGTTTTGTTAGCTGAGGTGGTTGGAAGCCATATGGGG  533

seq1  ATTTTCTCTTTTACTACTATGTTTTTGCTCATTGAACATGTAAATATTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTTTTACTACTATGTTTTTGCTCATTGAACATGTAAATATTAA  583

seq1  AATTAATTCTTATTTTTAGTGTTTTTCTAGTCTGTTGGGTAAGGAATTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTCTTATTTTTAGTGTTTTTCTAGTCTGTTGGGTAAGGAATTTG  633

seq1  TACTTAATACATTAAGATTCTTTTATTGCCTACAATAAAATGAATATTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAATACATTAAGATTCTTTTATTGCCTACAATAAAATGAATATTTG  683

seq1  AGATCTGCTTATTAAAATGGATGTTCCATGATGATATTGTCCACAATATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCTTATTAAAATGGATGTTCCATGATGATATTGTCCACAATATT  733

seq1  TCCTGAATGTTCAGGGAAATTCTGGTCACAATTGTCATGAATACATTTGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATGTTCAGGGAAATTCTGGTCACAATTGTCATGAATACATTTGT  783

seq1  TATATAAGTGGTCTCTTATACACACAAATATTTTCCTTTCTAGAAAATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGTGGTCTCTTATACACACAAATATTTTCCTTTCTAGAAAATTT  833

seq1  CCCTGCTTGCCTGGGGTCTCACAAGACCTGAGGTCCCATGACGTGGACAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTGCCTGGGGTCTCACAAGACCTGAGGTCCCATGACGTGGACAC  883

seq1  TGGGAAAAGGGAAAAACTCTGGATGTATAAAATCCAACCGGTTTTGAGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAGGGAAAAACTCTGGATGTATAAAATCCAACCGGTTTTGAGAG  933

seq1  AGCAACAGTAGGCAAGACTTATCAAAGACACCATTTACCTTCTCCATTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGTAGGCAAGACTTATCAAAGACACCATTTACCTTCTCCATTAT  983

seq1  ATACATGAAGATAATTTTCACTCATAGAATGCATTACTATTTTCGAAACA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGAAGATAATTTTCACTCATAGAATGCATTACTATTTTCGAAACA  1033

seq1  AACACAGTGACTTAATTCTAGGTAACCTAGAAATACATTTTCTTAATATC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTGACTTAATTCTAGGTAACCTAGAAATACATTTTCTTAATATC  1083

seq1  TGGGAGAAATTTATAATTATATCCAAGATAATTAGAAAGTAAAGAATTTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAAATTTATAATTATATCCAAGATAATTAGAAAGTAAAGAATTTA  1133

seq1  AAATACAGATATTTTTAAAACAGATGAATTC  1176
      |||||||||||||||||||||||||||||||
seq2  AAATACAGATATTTTTAAAACAGATGAATTC  1164


seq1: chr5_18688515_18689622
seq2: B6Ng01-245F19.g_65_1160

seq1  GAATTCCTTCAAGTATGCATTGGATGACATTGCCATCTGATAAGGTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAAGTATGCATTGGATGACATTGCCATCTGATAAGGTAAAT  50

seq1  TCAGGTGCCACTAGGTTGAGCAAGGGGTTTAGAATATATCCTTTTACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGCCACTAGGTTGAGCAAGGGGTTTAGAATATATCCTTTTACTGT  100

seq1  ATAGGGGGTTCTTTTGTTATTCCTACAGACGTGAAAGTTCATAGCTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGGTTCTTTTGTTATTCCTACAGACGTGAAAGTTCATAGCTGGGA  150

seq1  GGTAATACTACTTGTGATATTATTGTTTTGTTTCTGTTTTCATTTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATACTACTTGTGATATTATTGTTTTGTTTCTGTTTTCATTTTCATT  200

seq1  TTCCAAGACAGAGTTTCTCTGTGTAGCTATGGCTGTCCTGGAACTTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGACAGAGTTTCTCTGTGTAGCTATGGCTGTCCTGGAACTTACTC  250

seq1  TGTAAACCAGACTGGCATCAAAGTCACAGATCTGCCTCTTGAGTGCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACCAGACTGGCATCAAAGTCACAGATCTGCCTCTTGAGTGCTGGG  300

seq1  GTTAAAGGTATGTGTTAACCCTGCCTAGTTTTGTGTTTTCAGCTGGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGGTATGTGTTAACCCTGCCTAGTTTTGTGTTTTCAGCTGGCAGG  350

seq1  TGGCTTCAGCTAGACTCTCAGATGAGCGACTCCCTTCTAGGACTTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCAGCTAGACTCTCAGATGAGCGACTCCCTTCTAGGACTTTCTCT  400

seq1  GCTTCATCACCATCACAGAAGAACACAAGGAGCCCTGCAGATTCAGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATCACCATCACAGAAGAACACAAGGAGCCCTGCAGATTCAGGGAT  450

seq1  TCGGGCAGAAAATATGAACAGGAATGTGCCTACGAGCATTGAAGTGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGCAGAAAATATGAACAGGAATGTGCCTACGAGCATTGAAGTGGGAA  500

seq1  GGGGTGGTTATATGCAGCCACTTCCAACAGAGAACCAGGTCAAAGCCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGTTATATGCAGCCACTTCCAACAGAGAACCAGGTCAAAGCCGGA  550

seq1  GTGGACAGTGTTCCCTGAAGAGTCACGTGCAGTTTTTTGTCATGGAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAGTGTTCCCTGAAGAGTCACGTGCAGTTTTTTGTCATGGAGTCA  600

seq1  TGGTACTTAAAATAACTGTGTGTGACTTCATAACTGAATGTGAAGATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTTAAAATAACTGTGTGTGACTTCATAACTGAATGTGAAGATATT  650

seq1  CTTTATCTCCAAATTCAGAGGCAAAATGAGAAAAGGCCAACATATTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTCCAAATTCAGAGGCAAAATGAGAAAAGGCCAACATATTCACA  700

seq1  TCTATTTAAACAAAAGCTTGCTTAACAAAAAATTCCTGGTGTCAATTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTAAACAAAAGCTTGCTTAACAAAAAATTCCTGGTGTCAATTAAA  750

seq1  ATGAAAAGTGAACTGAAAAGCAAAGATCTACATTATGTCACAAAGGGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGTGAACTGAAAAGCAAAGATCTACATTATGTCACAAAGGGCTA  800

seq1  CTATATATAAAGTGTAAAAATCATCTAATAGAAAAACAAGGCTTCATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATAAAGTGTAAAAATCATCTAATAGAAAAACAAGGCTTCATAAA  850

seq1  AAACATTTCTTATAGAAAGATGAGTCTTACACGCGTTCGCGACC-GGCCA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAACATTTCTTATAGAAAGATGAGTCTTACACGCGTTCGCGACCGGGCCA  900

seq1  GGAAAGACGCAACAAACC-GGAATCTTCTGCGGCAAAAGCTTTATTGCTT  948
      |||||||||||||||||| ||||||||||||||||||||||||  |||||
seq2  GGAAAGACGCAACAAACCGGGAATCTTCTGCGGCAAAAGCTTTTATGCTT  950

seq1  ACATCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAGAGCAAGAGAGCAAGA  998
      ||||||||| |||||||||||| ||||||| |||||||||||||||||||
seq2  ACATCTTCA-GAGCCAGAGAGC-AGAGAGC-AGAGAGCAAGAGAGCAAGA  997

seq1  GAGCAAGAGCAAGAGAGAGCAAGAAAGCAAGAAAAAGAACAAGAACAAGA  1048
      |||| ||||||||||||||| ||||||| |||||||||||||| || |||
seq2  GAGC-AGAGCAAGAGAGAGC-AGAAAGC-AGAAAAAGAACAAGGAC-AGA  1043

seq1  AATCAAGAGCAAGAGAGAGAAAAAGAACAAGAACAAGAAAGCAAGAGAGA  1098
      |||| ||||| |||||||| ||||||   || |||   ||||| ||||||
seq2  AATC-AGAGC-AGAGAGAG-AAAAGA--CAGGACA--GAAGCAGGAGAGA  1086

seq1  GAATGGCAAA  1108
      ||||||||||
seq2  GAATGGCAAA  1096


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