BAC Information

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BAC

Clone NameB6Ng01-245K09
Chromosome5 (Build37)
Map Location 102,733,976 - 102,734,835
singlet/doubletsinglet
Overlap genenone
Upstream geneCycs-ps2, LOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527
Downstream geneLOC625780, Arhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245K09.bB6Ng01-245K09.g
ACCGA054479GA054480
length8671,014
definitionB6Ng01-245K09.b B6Ng01-245K09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccccaatgcaggaaaggagccaccatcttgttctttctgagtttt
cagttactagctgaggccatcacattagggagggaaatctgttccactaa
atttaccaatataaacagcagtctcattcaaatacatcattacagaaaca
ccccagataatatcactctgtgtgttggggaggggggtctgtctgtctat
cctaacttccttccccccttctctgtctgtctctgtctctgtctgtgagt
atgtgtgtgtttgtgtgtatgtgtctgtctatctctctgtctgtccccac
ctcctgctaccagtcagctgtagaatcactcgggttaccgtcgaggtttg
ccatacatccattcatcccattctaggtgaacactcttcatctcagccct
ttatgatgacatcacagaccaagaaccagcactcacattatggttatgta
agtacttatgtacttgtaagtctatatctagttaaacagacccctagcaa
agaggatattcatttaatgcctgttgctaatagacttttacacacatctg
gatggcatagacctatttcactcctttctgtcaaattatctttagctctg
aaacattccaatcttgacagtgattctctcgtgtatttatttctttgatt
tgagttcatgttgcttttctcttatcataaggaacacttgtatctaatgt
ataatgtgacttggttgacagagtgcttacctccatgcacaaggttttgg
gttggatccccaatactgttaaccttagcactcatgaggaagagggggtg
aggctcacaagttgcgacatcatactagtcatgatcacaaagggctccca
acccagctctgggtttc
gaattctcttacttgccttggtatagttggggtggggatctgagtttcag
tcttttttctggcttcctttagccactgcttctcatcttgaagagtgtat
cccatataagtaacttcagtctgacacagctgagcctttttagctgaggg
tcggtaccccaactcacctaattctgttaagcacattggtcttctgttgt
ccaggttccctatctgtctaagtcctgtcttttttctctcttaccactgc
agccaagattctagtcaaatttctctcttgtctacgatccctcccattct
ccttctgcttccccctctctctttcttctgcctcctctctctctctctct
ctctctctctctctctctctctctctcaatacaccttctctgcctctttc
actaaatcacataactgtctccctcttgtaatacaccttctcttacctta
accaaattagtgggctgttttgaggtgccttggagaccagagactggcga
caggatttcaagctctcccaacctttagccatgttgtagtcccaaccggg
gcgagtcaaagggaattccatgttgatctcatttgcagccgtgtaggccg
cctgtcggctcccgggatatatttcacactgcataaaccaaagagccaaa
aaactctctcttctttagttgtgaagagcatctataatatctgctgccaa
gcatcccaagtaggctgatgagagaacattagggactccaccaaccctgt
gaggtgttggggaatcctctgaaaaagggggggtggttagttttccagtt
ataaatggccagtactgaaaggggttgtagtgttgggcgggtccactgga
gtctcatctggactctgcactctccagcttccgtgtacacacaagcaagt
ccacctccttgcaccttgaggagttcggggttccccatggcgaggtttga
gggctctgtgattactgaaaagatcttgactatgctacttcttgaagctc
tctattccgcggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_102733976_102734835
seq2: B6Ng01-245K09.b_47_913 (reverse)

seq1  GAAACCCAG-GCT-GGTTTGGAGCCCTTTGTGA-CATG-CTAG-ATGATG  45
      ||||||||| ||| |||| |||||||||||||| |||| |||| ||||||
seq2  GAAACCCAGAGCTGGGTTGGGAGCCCTTTGTGATCATGACTAGTATGATG  50

seq1  T-GGAACTTGTGAGCCTCA-CCCCTCTTCCTCCTGAGTGCTAAGGTTAAC  93
      | | ||||||||||||||| |||||||||||| |||||||||||||||||
seq2  TCGCAACTTGTGAGCCTCACCCCCTCTTCCTCATGAGTGCTAAGGTTAAC  100

seq1  AGTATTGGGGATCCAACCCAAAACCTTGTGCATGGAGGTAAGCACTCTGT  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGGGGATCCAACCCAAAACCTTGTGCATGGAGGTAAGCACTCTGT  150

seq1  CAACCAAGTCACATTATACATTAGATACAAGTGTTCCTTATGATAAGAGA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAGTCACATTATACATTAGATACAAGTGTTCCTTATGATAAGAGA  200

seq1  AAAGCAACATGAACTCAAATCAAAGAAATAAATACACGAGAGAATCACTG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACATGAACTCAAATCAAAGAAATAAATACACGAGAGAATCACTG  250

seq1  TCAAGATTGGAATGTTTCAGAGCTAAAGATAATTTGACAGAAAGGAGTGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATTGGAATGTTTCAGAGCTAAAGATAATTTGACAGAAAGGAGTGA  300

seq1  AATAGGTCTATGCCATCCAGATGTGTGTAAAAGTCTATTAGCAACAGGCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTCTATGCCATCCAGATGTGTGTAAAAGTCTATTAGCAACAGGCA  350

seq1  TTAAATGAATATCCTCTTTGCTAGGGGTCTGTTTAACTAGATATAGACTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAATATCCTCTTTGCTAGGGGTCTGTTTAACTAGATATAGACTT  400

seq1  ACAAGTACATAAGTACTTACATAACCATAATGTGAGTGCTGGTTCTTGGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTACATAAGTACTTACATAACCATAATGTGAGTGCTGGTTCTTGGT  450

seq1  CTGTGATGTCATCATAAAGGGCTGAGATGAAGAGTGTTCACCTAGAATGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGTCATCATAAAGGGCTGAGATGAAGAGTGTTCACCTAGAATGG  500

seq1  GATGAATGGATGTATGGCAAACCTCGACGGTAACCCGAGTGATTCTACAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGGATGTATGGCAAACCTCGACGGTAACCCGAGTGATTCTACAG  550

seq1  CTGACTGGTAGCAGGAGGTGGGGACAGACAGAGAGATAGACAGACACATA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGTAGCAGGAGGTGGGGACAGACAGAGAGATAGACAGACACATA  600

seq1  CACACAAACACACACATACTCACAGACAGAGACAGAGACAGACAGAGAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACACACACATACTCACAGACAGAGACAGAGACAGACAGAGAAG  650

seq1  GGGGGAAGGAAGTTAGGATAGACAGACAGACCCCCCTCCCCAACACACAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGGAAGTTAGGATAGACAGACAGACCCCCCTCCCCAACACACAG  700

seq1  AGTGATATTATCTGGGGTGTTTCTGTAATGATGTATTTGAATGAGACTGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATTATCTGGGGTGTTTCTGTAATGATGTATTTGAATGAGACTGC  750

seq1  TGTTTATATTGGTAAATTTAGTGGAACAGATTTCCCTCCCTAATGTGATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATTGGTAAATTTAGTGGAACAGATTTCCCTCCCTAATGTGATG  800

seq1  GCCTCAGCTAGTAACTGAAAACTCAGAAAGAACAAGATGGTGGCTCCTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCTAGTAACTGAAAACTCAGAAAGAACAAGATGGTGGCTCCTTT  850

seq1  CCTGCATTGGGGAATTC  860
      |||||||||||||||||
seq2  CCTGCATTGGGGAATTC  867