BAC Information

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BAC

Clone NameB6Ng01-245K13
Chromosome5 (Build37)
Map Location 69,547,254 - 69,709,781
singlet/doubletdoublet
Overlap geneKctd8
Upstream geneAY616753, LOC666996
Downstream geneLOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245K13.bB6Ng01-245K13.g
ACCGA054487GA054488
length1,1261,168
definitionB6Ng01-245K13.b B6Ng01-245K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,547,254 - 69,548,373)(69,708,609 - 69,709,781)
sequence
gaattcttgacctaaactcatattttaattttgccgttaaatttcttgat
attctaagtcttctgtagcatttagaaatcttccaacacatcatttcacc
aggtaatggttggaaatatctacactctcaaaactagtggatggaaatca
atgtgatttctgagaccatctggtgatttgcgctagacagctccaagcaa
acaccaggaaaatattgatttcctttgcaaatttataagtcaggtcctaa
attctctgtgtttgtttagtgttcctatcctgggcaggaaggatgctaaa
tggtaatgtcaaacacacatttaggtgattgttttgtgttccacacacct
gtgccaagaggctgccacagctgtcatgtgaccattttacatgtaggcta
aggaatgctcatacatctcaccctcattcctccctacaatggcctatctc
tgattttcaggcccttctataattgttccaatcaatgctataacacccta
agtgggtatttatggaaaatcaatttagaacactgtaattagcaaacact
gtaagcctcaaactgttagttcccagcagtcactccaagcaggaatttac
ccacgacaaaggaagcttgtcttaagacactcaccaacactgatttggtt
attgctcaatggtgacattaatttgtttacgtgagatagtaccaaggtct
tatcttattttcacaaacaaggatgatgtataatattctaaaactccatt
ctgtcaaaacagaagaatgtcatcactgatatcgggtccagagattttga
acattatgttggcaagaaatcaaatttcacattctctttgtgaaataata
ttaaatgctttttacacatcaggcaggaatattagaaaaaaattaattgt
attagagttttcatttcagtggcttacaaagatattttttctagattcct
tcccttgctcctctttctctctatctctgtccccatctcccaggcataga
agttgttgcacttcagcttgaattctaaaccacagatgggagaaaatgaa
gtcagaatgactgctattgaaatccaggccagagagaaaccttcttctgc
ttctcttgccgagcctgaacaaacac

gaattcaagtcctttggaatattgccttggaaattatataggtagttttc
tggattattgtttaagaatgtgatcactgtaagcaagcatattccctgaa
aaagtatgatattgagggaatactaaatgaaaaagggtagagatttgtgt
atacagtattctcttagttatgattagaagctgagatagcctttctgcat
taagaggagacattattgattctatcatcatcatcattgtcataatcata
ttttaaatttctctatagagttagcgtactgatatggggaaatatgctta
ccaaaactagagatcagaagactatatctgatatatactagttgtattgt
cttcaactagttttgaatgttactagtctcatagtaaaatgattaacatc
ctctgtttcatttaaggtaagaattattctttcattcatagtttggtaga
agacacctgaaatgtcattaggccagagaatttagggtaggaagagcctc
ttaagtttacttcttagttgtttggccagctttctttgatagatgtactg
tcacctttcagtcctatttttcacatgatgtggaaaatgaccctagtaag
acaatatctagaagtggcaataaatatgatctgtccctctggtgctgagc
ttggcacctctctggcatatggtatcaacatcttatggtagtttcatata
atttttacaatgaaagtttgatatattcatcatttttctctttgtagtga
tcaaattcccaataagaatcaactaatggaggaagagtttgttataacaa
gtgtagaatgggcaacgttaggtcctgacacagaaagtgtgatggcagaa
gtttgaggcattgggtaacagtgtatctacaatcatattatcaatagaaa
gcagaagagatagaaagtagagagaggctataaaccccaaggtacatcac
tagtgacccacttccctccagtgaagcctgctatataaagcttttcctaa
acagcatcatcattggaaagcaagtaagttgctcagaccacgagcctatt
aggatgaattgaatgttcttatctaccagcatatgacttggccacatggt
tctttccaaggtttatcttaagaacttttggtgaaaagcagttctggtag
gctcatcacattgtcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_69547254_69548373
seq2: B6Ng01-245K13.b_49_1174

seq1  GAATTCTTGACCTAAACTCATATTTTAATTTTGCCGTTAAATTTCTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACCTAAACTCATATTTTAATTTTGCCGTTAAATTTCTTGAT  50

seq1  ATTCTAAGTCTTCTGTAGCATTTAGAAATCTTCCAACACATCATTTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGTCTTCTGTAGCATTTAGAAATCTTCCAACACATCATTTCACC  100

seq1  AGGTAATGGTTGGAAATATCTACACTCTCAAAACTAGTGGATGGAAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATGGTTGGAAATATCTACACTCTCAAAACTAGTGGATGGAAATCA  150

seq1  ATGTGATTTCTGAGACCATCTGGTGATTTGCGCTAGACAGCTCCAAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTTCTGAGACCATCTGGTGATTTGCGCTAGACAGCTCCAAGCAA  200

seq1  ACACCAGGAAAATATTGATTTCCTTTGCAAATTTATAAGTCAGGTCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGAAAATATTGATTTCCTTTGCAAATTTATAAGTCAGGTCCTAA  250

seq1  ATTCTCTGTGTTTGTTTAGTGTTCCTATCCTGGGCAGGAAGGATGCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGTGTTTGTTTAGTGTTCCTATCCTGGGCAGGAAGGATGCTAAA  300

seq1  TGGTAATGTCAAACACACATTTAGGTGATTGTTTTGTGTTCCACACACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATGTCAAACACACATTTAGGTGATTGTTTTGTGTTCCACACACCT  350

seq1  GTGCCAAGAGGCTGCCACAGCTGTCATGTGACCATTTTACATGTAGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAGAGGCTGCCACAGCTGTCATGTGACCATTTTACATGTAGGCTA  400

seq1  AGGAATGCTCATACATCTCACCCTCATTCCTCCCTACAATGGCCTATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCTCATACATCTCACCCTCATTCCTCCCTACAATGGCCTATCTC  450

seq1  TGATTTTCAGGCCCTTCTATAATTGTTCCAATCAATGCTATAACACCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCAGGCCCTTCTATAATTGTTCCAATCAATGCTATAACACCCTA  500

seq1  AGTGGGTATTTATGGAAAATCAATTTAGAACACTGTAATTAGCAAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTATTTATGGAAAATCAATTTAGAACACTGTAATTAGCAAACACT  550

seq1  GTAAGCCTCAAACTGTTAGTTCCCAGCAGTCACTCCAAGCAGGAATTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCTCAAACTGTTAGTTCCCAGCAGTCACTCCAAGCAGGAATTTAC  600

seq1  CCACGACAAAGGAAGCTTGTCTTAAGACACTCACCAACACTGATTTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGACAAAGGAAGCTTGTCTTAAGACACTCACCAACACTGATTTGGTT  650

seq1  ATTGCTCAATGGTGACATTAATTTGTTTACGTGAGATAGTACCAAGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCAATGGTGACATTAATTTGTTTACGTGAGATAGTACCAAGGTCT  700

seq1  TATCTTATTTTCACAAACAAGGATGATGTATAATATTCTAAAACTCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATTTTCACAAACAAGGATGATGTATAATATTCTAAAACTCCATT  750

seq1  CTGTCAAAACAGAAGAATGTCATCACTGATATCGGGTCCAGAGATTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAAACAGAAGAATGTCATCACTGATATCGGGTCCAGAGATTTTGA  800

seq1  ACATTATGTTGGCAAGAAATCAAATTTCACATTCTCTTTGTGAAATAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGTTGGCAAGAAATCAAATTTCACATTCTCTTTGTGAAATAATA  850

seq1  TT-AATGCTTTTTACACATCAGGCAGGAATATTAGAAAAAAATTAATTGT  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCTTTTTACACATCAGGCAGGAATATTAGAAAAAAATTAATTGT  900

seq1  ATTAGAGTTTTCATTTCAGTGGCTTACAAAGATATTTTTTCTAGATTCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGTTTTCATTTCAGTGGCTTACAAAGATATTTTTTCTAGATTCCT  950

seq1  TCCCTTGCTCCTCTTTCTCTCTATCTCTGTCCCCATCTCCCAGGCATAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCTCCTCTTTCTCTCTATCTCTGTCCCCATCTCCCAGGCATAGA  1000

seq1  AGTTGTTGCAACTTCAGCTTG-ATTCTAAA-CACAGATGGAAG-AAATGA  1046
      ||||||||| ||||||||||| |||||||| ||||||||| || ||||||
seq2  AGTTGTTGC-ACTTCAGCTTGAATTCTAAACCACAGATGGGAGAAAATGA  1049

seq1  AGTCAGAATGACTGCTATTGAAATCAAGGCCCAGAGAGAAACCT--CTCT  1094
      ||||||||||||||||||||||||| ||| ||||||||||||||   |||
seq2  AGTCAGAATGACTGCTATTGAAATCCAGG-CCAGAGAGAAACCTTCTTCT  1098

seq1  GC-TCTCTGCCAGAGCCTG-ACAAACAC  1120
      || |||||  | ||||||| ||||||||
seq2  GCTTCTCTTGCCGAGCCTGAACAAACAC  1126


seq1: chr5_69708609_69709781
seq2: B6Ng01-245K13.g_67_1234 (reverse)

seq1  CATGACAATGTAGTGAACCCCTACAGG--CTGCTTTTTTTCA-CAAAAGT  47
      |||||||||||  |||   |||||  |  ||||   |||||| |||||||
seq2  CATGACAATGTGATGA--GCCTACCAGAACTGC---TTTTCACCAAAAGT  45

seq1  GCCCTAAGAGTAAAACTTGAAAAGAACCATGTGTGCAAAGGTCATATGCT  97
        | ||||| |||| |||| |||||||||||||  |||  ||||||||||
seq2  -TCTTAAGA-TAAACCTTGGAAAGAACCATGTGGCCAA--GTCATATGCT  91

seq1  -GTAGAT-AGAACA-TCAATTCATCCTAATAGGCTCGTGGTCTTGAGC-A  143
       |||||| |||||| ||||||||||||||||||||||||||| ||||| |
seq2  GGTAGATAAGAACATTCAATTCATCCTAATAGGCTCGTGGTC-TGAGCAA  140

seq1  CTTACTTGCTTTCCAAATGATGATGCTGTTTAGGAAAAGCTTTATATAGC  193
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTACTTGCTTTCC-AATGATGATGCTGTTTAGGAAAAGCTTTATATAGC  189

seq1  AGGGCTTCACTGGAGGG-AGTGGGTCACTAGTGGTGTACCTTGGGGTTTT  242
      | ||||||||||||||| ||||||||||||||| |||||||||||| |||
seq2  A-GGCTTCACTGGAGGGAAGTGGGTCACTAGTGATGTACCTTGGGG-TTT  237

seq1  ATAGCCTCTCTCTACTTTCTATCTCTTCTGCTTTCTATTGATAATATGAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTCTCTCTACTTTCTATCTCTTCTGCTTTCTATTGATAATATGAT  287

seq1  TGTAGATACACTGTTACCCAATGCCTCAAACTTCTGCCATCACACCTTCT  342
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTAGATACACTGTTACCCAATGCCTCAAACTTCTGCCATCACACTTTCT  337

seq1  GTGTCAGGACCTAACGTTGCCCATTCTACACTTGTTATAACAAACTCTTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGGACCTAACGTTGCCCATTCTACACTTGTTATAACAAACTCTTC  387

seq1  CTCCATTAGTTGATTCTTATTGGGAATTTGATCACTACAAAGAGAAAAAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTAGTTGATTCTTATTGGGAATTTGATCACTACAAAGAGAAAAAT  437

seq1  GATGAATATATCAAACTTTCATTGTAAAAATTATATGAAACTACCATAAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATATATCAAACTTTCATTGTAAAAATTATATGAAACTACCATAAG  487

seq1  ATGTTGATACCATATGCCAGAGAGGTGCCAAGCTCAGCACCAGAGGGACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATACCATATGCCAGAGAGGTGCCAAGCTCAGCACCAGAGGGACA  537

seq1  GATCATATTTATTGCCACTTCTAGATATTGTCTTACTAGGGTCATTTTCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATATTTATTGCCACTTCTAGATATTGTCTTACTAGGGTCATTTTCC  587

seq1  ACATCATGTGAAAAATAGGACTGAAAGGTGACAGTACATCTATCAAAGAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATGTGAAAAATAGGACTGAAAGGTGACAGTACATCTATCAAAGAA  637

seq1  AGCTGGCCAAACAACTAAGAAGTAAACTTAAGAGGCTCTTCCTACCCTAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCCAAACAACTAAGAAGTAAACTTAAGAGGCTCTTCCTACCCTAA  687

seq1  ATTCTCTGGCCTAATGACATTTCAGGTGTCTTCTACCAAACTATGAATGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGGCCTAATGACATTTCAGGTGTCTTCTACCAAACTATGAATGA  737

seq1  AAGAATAATTCTTACCTTAAATGAAACAGAGGATGTTAATCATTTTACTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAATTCTTACCTTAAATGAAACAGAGGATGTTAATCATTTTACTA  787

seq1  TGAGACTAGTAACATTCAAAACTAGTTGAAGACAATACAACTAGTATATA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTAGTAACATTCAAAACTAGTTGAAGACAATACAACTAGTATATA  837

seq1  TCAGATATAGTCTTCTGATCTCTAGTTTTGGTAAGCATATTTCCCCATAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATAGTCTTCTGATCTCTAGTTTTGGTAAGCATATTTCCCCATAT  887

seq1  CAGTACGCTAACTCTATAGAGAAATTTAAAATATGATTATGACAATGATG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACGCTAACTCTATAGAGAAATTTAAAATATGATTATGACAATGATG  937

seq1  ATGATGATAGAATCAATAATGTCTCCTCTTAATGCAGAAAGGCTATCTCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATAGAATCAATAATGTCTCCTCTTAATGCAGAAAGGCTATCTCA  987

seq1  GCTTCTAATCATAACTAAGAGAATACTGTATACACAAATCTCTACCCTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAATCATAACTAAGAGAATACTGTATACACAAATCTCTACCCTTT  1037

seq1  TTCATTTAGTATTCCCTCAATATCATACTTTTTCAGGGAATATGCTTGCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAGTATTCCCTCAATATCATACTTTTTCAGGGAATATGCTTGCT  1087

seq1  TACAGTGATCACATTCTTAAACAATAATCCAGAAAACTACCTATATAATT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGATCACATTCTTAAACAATAATCCAGAAAACTACCTATATAATT  1137

seq1  TCCAAGGCAATATTCCAAAGGACTTGAATTC  1173
      |||||||||||||||||||||||||||||||
seq2  TCCAAGGCAATATTCCAAAGGACTTGAATTC  1168


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