BAC Information

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BAC

Clone NameB6Ng01-246A03
Chromosome5 (Build37)
Map Location 31,107,231 - 31,310,253
singlet/doubletdoublet
Overlap geneMapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23
Upstream geneDnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5
Downstream geneSlc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246A03.bB6Ng01-246A03.g
ACCGA054744GA054745
length1,1381,155
definitionB6Ng01-246A03.b B6Ng01-246A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,309,124 - 31,310,253)(31,107,231 - 31,108,349)
sequence
gaattctcaccacttaaccaaaatggaagaacttttcaaaataacctgtt
catggctattgtgaatagttctagttccactcaagaaatagaagaaaacc
ttaccctgaagaaaaccctaggctgtagggcatcatttttgcaacattct
tcaaggagtaattaattctagatttacatatatgaataacaccctttcta
ttatgcacttcataaacaccattagctgggcacgatggtggccttcctgt
aattccaataccacaggatcaggaggatcgggagtccaaggttatcctca
gctacaaagtgaatctcaagtcagcctgggctatgtgagacccaaccaac
caaccaaatataactagcaacaaacagctaggcatggtggtgcacgcctt
taatcccagcaatcaggaagcagacacaggttaatctctgtgagtttgag
gccagcctggcctacagagtgaattctaggacagtcaagtctacacagag
gaaccctgtcctggaaaaccaaaaacaacaacaacagcaaacaacccaga
aacaaacaaacaaacaaaaaacaaacaaaaacaagaaaaaacaaaagaac
ctcccccccaaaaaaacaaaaacaaaaaacccccaaacatttaaagtatg
aaaatttaaaatatgttttcataagagcatcaacccaagaccggagagag
tataaatgaggagatgcatcttgtcttggtgctacatgctctatgcccag
tattcaaggagactgaagtaagtgatcatgaatttgaagctgatctgagc
tactcagtgaatttcagcctaacctgggctacataatcaagactctcaac
cagaaaaagagagtataggataacccaaatcatgagcatagatgtacata
tctcttttggggggagggggggaatacctcactcatttgtagcccaggct
tgttaggaacttagtatatagccaagtctagcttgcctggctatgtgata
attctcccgccattagcctcttgagtacaggaataaaccactgtgcttgg
ctgagtcataaaaacatggaggaatagaaatatagcacttgtattagcag
aatatattatctactatttaagtgatcatcattagttg
gaattccatggtcatgaatcagatgacttcatatcattaaggtggccata
gtccctcaaatggagccatagattctgcataacccgcagcagaattccag
ctgtaaaggtggagagctggctttaaaattcatgtggaacaacagaggac
tcagaagagtaaagtcaggaaaaccttaaggagctggtgaaaccatcatg
aatctagtcatgaagacggagccccagacagctcaacacctctcagtagg
cctccctctcaaatatccctccacacccacccctccaaccaactcaacag
actttgggaaacacactcagaccttatccaaaccccgaaaacacatggca
ggcatgaagataagggagcacacacacacacacacacacacacacacaca
cacgtacacgcacatgcagtcccctgcagctagcagtctgctaaaacaat
ggcctctaaggagcatatgtttccctgaccagtctcatgctggggaagtt
aaagctggagacctttacatcacccagagggggacttgtcttctggaagg
agtctgcactatgctggcattgactcaggacagactgagagccaacggca
gcagtcagcattgggtcagtgagggccagagccacatcttgtccagaaat
gtgcagtgaagcacacctctttgctctctacttaacctcatgtcagtact
cagaccatgggcttgggcataccattgaccctcctttaccggttctcccc
aagggacatgcagtatgaatcttttttctgttctgtttactatttatttg
cctgtgcagggattggtggcaccaggccttgctttgtttgtagctgtcaa
agggcccaagactctgaaccccttatcaatagcaatttcaagataatttc
agtgggagaaaaagttaaaaccagtattctcaacaaatttgtgtttagac
acatagatatccacatggcaaaaacaaaattgggaattggaattggcctc
cacaatctggaaaaacgcatccaaatggtccaaaaaatgtaattctaaga
ggctaggagctaacaattttttaagaaaaaaaaaaaaaaagccatcaggg
tacatttggaggctttgataagtaattgggatcccatacatatggattcg
aaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31309124_31310253
seq2: B6Ng01-246A03.b_44_1181 (reverse)

seq1  CAACTAATTAATAGATCAC-TAAATAGTAGAT-ATATA-TCTGCT-ATAC  46
      |||||||| |   |||||| |||||||||||| ||||| |||||| ||||
seq2  CAACTAATGA--TGATCACTTAAATAGTAGATAATATATTCTGCTAATAC  48

seq1  -AGTGCTATA-TTCTAT--CTCAATG-TTTTATGACTTCAAGCCAAGCAC  91
       ||||||||| ||||||  ||| ||| ||||||||||   ||||||||||
seq2  AAGTGCTATATTTCTATTCCTCCATGTTTTTATGACT--CAGCCAAGCAC  96

seq1  AGTGGTTTATTCCTGTACTCAAGAGGCT-ATGGCGGGAGAATTATCACAT  140
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTGGTTTATTCCTGTACTCAAGAGGCTAATGGCGGGAGAATTATCACAT  146

seq1  AGCCAGGCAAGCTAGACTTGGCTATATACTAAGTTCCTAACAAGCCTGGG  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCAAGCTAGACTTGGCTATATACTAAGTTCCTAACAAGCCTGGG  196

seq1  CTACAAATGAGTGAGGTATTCCCCCC--TCCCCCAAAAGAGATATGTACA  238
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  CTACAAATGAGTGAGGTATTCCCCCCCTCCCCCCAAAAGAGATATGTACA  246

seq1  TCTATGCTCATGATTTGGGTTATCCTATACTCTCTTTTTCTGGTTGAGAG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTCATGATTTGGGTTATCCTATACTCTCTTTTTCTGGTTGAGAG  296

seq1  TCTTGATTATGTAGCCCAGGTTAGGCTGAAATTCACTGAGTAGCTCAGAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTATGTAGCCCAGGTTAGGCTGAAATTCACTGAGTAGCTCAGAT  346

seq1  CAGCTTCAAATTCATGATCACTTACTTCAGTCTCCTTGAATACTGGGCAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCAAATTCATGATCACTTACTTCAGTCTCCTTGAATACTGGGCAT  396

seq1  AGAGCATGTAGCACCAAGACAAGATGCATCTCCTCATTTATACTCTCTCC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATGTAGCACCAAGACAAGATGCATCTCCTCATTTATACTCTCTCC  446

seq1  GGTCTTGGGTTGATGCTCTTATGAAAACATATTTTAAATTTTCATACTTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGGTTGATGCTCTTATGAAAACATATTTTAAATTTTCATACTTT  496

seq1  AAATGTTTGGGGGTTTTTTGTTTTTGTTTTTTTGGGGGGGAGGTTCTTTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGGGGGTTTTTTGTTTTTGTTTTTTTGGGGGGGAGGTTCTTTT  546

seq1  GTTTTTTCTTGTTTTTGTTTGTTTTTTGTTTGTTTGTTTGTTTCTGGGTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTCTTGTTTTTGTTTGTTTTTTGTTTGTTTGTTTGTTTCTGGGTT  596

seq1  GTTTGCTGTTGTTGTTGTTTTTGGTTTTCCAGGACAGGGTTCCTCTGTGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGTTGTTGTTGTTTTTGGTTTTCCAGGACAGGGTTCCTCTGTGT  646

seq1  AGACTTGACTGTCCTAGAATTCACTCTGTAGGCCAGGCTGGCCTCAAACT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGACTGTCCTAGAATTCACTCTGTAGGCCAGGCTGGCCTCAAACT  696

seq1  CACAGAGATTAACCTGTGTCTGCTTCCTGATTGCTGGGATTAAAGGCGTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGATTAACCTGTGTCTGCTTCCTGATTGCTGGGATTAAAGGCGTG  746

seq1  CACCACCATGCCTAGCTGTTTGTTGCTAGTTATATTTGGTTGGTTGGTTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCATGCCTAGCTGTTTGTTGCTAGTTATATTTGGTTGGTTGGTTG  796

seq1  GGTCTCACATAGCCCAGGCTGACTTGAGATTCACTTTGTAGCTGAGGATA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCACATAGCCCAGGCTGACTTGAGATTCACTTTGTAGCTGAGGATA  846

seq1  ACCTTGGACTCCCGATCCTCCTGATCCTGTGGTATTGGAATTACAGGAAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGACTCCCGATCCTCCTGATCCTGTGGTATTGGAATTACAGGAAG  896

seq1  GCCACCATCGTGCCCAGCTAATGGTGTTTATGAAGTGCATAATAGAAAGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATCGTGCCCAGCTAATGGTGTTTATGAAGTGCATAATAGAAAGG  946

seq1  GTGTTATTCATATATGTAAATCTAGAATTAATTACTCCTTGAAGAATGTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATTCATATATGTAAATCTAGAATTAATTACTCCTTGAAGAATGTT  996

seq1  GCAAAAATGATGCCCTACAGCCTAGGGTTTTCTTCAGGGTAAGGTTTTCT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATGATGCCCTACAGCCTAGGGTTTTCTTCAGGGTAAGGTTTTCT  1046

seq1  TCTATTTCTTGAGTGGAACTAGAACTATTCACAATAGCCATGAACAGGTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCTTGAGTGGAACTAGAACTATTCACAATAGCCATGAACAGGTT  1096

seq1  ATTTTGAAAAGTTCTTCCATTTTGGTTAAGTGGTGAGAATTC  1130
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAAAGTTCTTCCATTTTGGTTAAGTGGTGAGAATTC  1138

seq1: chr5_31107231_31108349
seq2: B6Ng01-246A03.g_68_1222

seq1  GAATTCCATGGTCATGAATCAGATGACTTCATATCATTAAGGTGGCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTCATGAATCAGATGACTTCATATCATTAAGGTGGCCATA  50

seq1  GTCCCTCAAATGGAGCCATAGATTCTGCATAACCCGCAGCAGAATTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCAAATGGAGCCATAGATTCTGCATAACCCGCAGCAGAATTCCAG  100

seq1  CTGTAAAGGTGGAGAGCTGGCTTTAAAATTCATGTGGAACAACAGAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGGTGGAGAGCTGGCTTTAAAATTCATGTGGAACAACAGAGGAC  150

seq1  TCAGAAGAGTAAAGTCAGGAAAACCTTAAGGAGCTGGTGAAACCATCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGTAAAGTCAGGAAAACCTTAAGGAGCTGGTGAAACCATCATG  200

seq1  AATCTAGTCATGAAGACGGAGCCCCAGACAGCTCAACACCTCTCAGTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGTCATGAAGACGGAGCCCCAGACAGCTCAACACCTCTCAGTAGG  250

seq1  CCTCCCTCTCAAATATCCCTCCACACCCACCCCTCCAACCAACTCAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCTCAAATATCCCTCCACACCCACCCCTCCAACCAACTCAACAG  300

seq1  ACTTTGGGAAACACACTCAGACCTTATCCAAACCCCGAAAACACATGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGAAACACACTCAGACCTTATCCAAACCCCGAAAACACATGGCA  350

seq1  GGCATGAAGATAAGGGAGCACACACACACACACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAAGATAAGGGAGCACACACACACACACACACACACACACACACA  400

seq1  CACGTACACGCACATGCAGTCCCCTGCAGCTAGCAGTCTGCTAAAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTACACGCACATGCAGTCCCCTGCAGCTAGCAGTCTGCTAAAACAAT  450

seq1  GGCCTCTAAGGAGCATATGTTTCCCTGACCAGTCTCATGCTGGGGAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTAAGGAGCATATGTTTCCCTGACCAGTCTCATGCTGGGGAAGTT  500

seq1  AAAGCTGGAGACCTTTACATCACCCAGAGGGGGACTTGTCTTCTGGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGAGACCTTTACATCACCCAGAGGGGGACTTGTCTTCTGGAAGG  550

seq1  AGTCTGCACTATGCTGGCATTGACTCAGGACAGACTGAGAGCCAACGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCACTATGCTGGCATTGACTCAGGACAGACTGAGAGCCAACGGCA  600

seq1  GCAGTCAGCATTGGGTCAGTGAGGGCCAGAGCCACATCTTGTCCAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGCATTGGGTCAGTGAGGGCCAGAGCCACATCTTGTCCAGAAAT  650

seq1  GTGCAGTGAAGCACACCTC-TTGCTCTCTACTTAACCTCATGTCAGTACT  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGCAGTGAAGCACACCTCTTTGCTCTCTACTTAACCTCATGTCAGTACT  700

seq1  CAGACCATGGGCTTGGGCATACCATTGACCCTCC-TTACCGGTTCT-CCC  747
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  CAGACCATGGGCTTGGGCATACCATTGACCCTCCTTTACCGGTTCTCCCC  750

seq1  AAGGGACATGCAGTATGAATC-TTTTTCTG-TCTG-TTACTA-TTATTTG  793
      ||||||||||||||||||||| |||||||| |||| |||||| |||||||
seq2  AAGGGACATGCAGTATGAATCTTTTTTCTGTTCTGTTTACTATTTATTTG  800

seq1  CCTGTGCAGG--ATGGTGGC-CCA-GCCTTGC-TTGTTAG-AGCTG-CAA  836
      ||||||||||   ||||||| ||| ||||||| ||||| | ||||| |||
seq2  CCTGTGCAGGGATTGGTGGCACCAGGCCTTGCTTTGTTTGTAGCTGTCAA  850

seq1  AGG--CCCAGACTCTGA---CCCTAACAATAGCAATTTCAAGATAA-TTC  880
      |||  || |||||||||   || || |||||||||||||||||||| |||
seq2  AGGGCCCAAGACTCTGAACCCCTTATCAATAGCAATTTCAAGATAATTTC  900

seq1  AGT-GGAGAAAAAGTTAAAACCAGTATTCTCAACAAA-TTGTGTTTAGAC  928
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTGGGAGAAAAAGTTAAAACCAGTATTCTCAACAAATTTGTGTTTAGAC  950

seq1  ACATAGATATCCACATG--CAAAACAAA--TTGGAATTGGAATTTGCCT-  973
      |||||||||||||||||   ||||||||  | |||||||||||| |||| 
seq2  ACATAGATATCCACATGGCAAAAACAAAATTGGGAATTGGAATTGGCCTC  1000

seq1  CACAATCTGG-AAAACGCATCCAAAATGGGTC-AAAAATGTAAATCTAAG  1021
      |||||||||| ||||||||||| ||||||  | |||||||||| ||||||
seq2  CACAATCTGGAAAAACGCATCC-AAATGGTCCAAAAAATGTAATTCTAAG  1049

seq1  A-GCTA-GAGCTACAAATTTTT--AGAAAAAAAAAAAAA---GCATCAAG  1064
      | |||| ||||||  |||||||  |||||||||||||||    ||||| |
seq2  AGGCTAGGAGCTAACAATTTTTTAAGAAAAAAAAAAAAAAAGCCATCAGG  1099

seq1  GTACATTTTTAGAGCTTTGATTAAGTA--TTGGAT-CCATACATATGATA  1111
      ||||||||  || ||||||| ||||||  | |||| |||||||||||   
seq2  GTACATTTGGAG-GCTTTGA-TAAGTAATTGGGATCCCATACATATGGAT  1147

seq1  TCGAAAGC  1119
      ||||||||
seq2  TCGAAAGC  1155