BAC Information

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BAC

Clone NameB6Ng01-246D14
Chromosome5 (Build37)
Map Location 50,774,625 - 50,907,383
singlet/doubletdoublet
Overlap geneEG637307
Upstream geneLOC100041659, EG433885, LOC666223, Gpr125
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246D14.bB6Ng01-246D14.g
ACCGA054899GA054900
length1,190901
definitionB6Ng01-246D14.b B6Ng01-246D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,906,212 - 50,907,383)(50,774,625 - 50,775,525)
sequence
gaattcatcactttggccaataacagagctgttttagtatttttcaacac
ctaaaatctaggaaattagaccatatgtctcagtggtccttaccaatgac
ctagccagctctctgccagggagtctgtattccagcctttccccaaacca
tttttggatcaattaacctactggtttgtcatctctcactaaaacgaggt
atctaaatggtaactctttcaattttcatttgcttgttttgggtttttat
gttgtctgtattatgtattaatctattcacttaattctttattatttctg
tctcaatctttattttcctttctctcttttaaaaaaaataggggcatgac
aatctgggacttgttcagatgtgatgagctatgacaagtggtggcttgca
tcacaacccaacatcagtgtgtacaggacatctcttgcagtaagtcagga
attgtgacaactggaaacaggagttcttgccatcctttaaatacatgcta
taatcacagtttttatgctggacacaatgtctctgcttttacaggctctc
ttgagccaagttaaaatgtggtccattttctctgaaagtaaaggttattc
ataattttatactttcactccttgataaatgaaaagaaaataaaaggaag
atgcagctattgcatgtcttgtgtacagtctgttggataaatatgttaca
tttgatgcaaatgatgagcatcaggtgtttgcctggcatgaggctttgtg
ctctatgaacatctgctcattaacctcgacagcactttaagggagagtgt
tttacacatacaatttgatagatgattttttaaaaaatgagactcatgaa
ttgaggacatgatttcatcattccaggaaaaaatgggcatggaaattccc
atgacacaaaaacttatttccttatatatatacagaaaagaagaaagaaa
gaatggaaagaaagaaagaaaggaaagaaagagagagagagagagagaga
gagaatgatggaaagaaaggaaagaaagaaaagagaaagaaaaaaaaaac
ttcctcaaaaacaaaatatatggtgcactccatgttccatggtagttact
ataacagcctgaagcctgtacccctccacgaaatggcccttcctggccct
tctcaatggtaccaagtcccaccggtctctccattgaccc
gaattcttcccagagctatctgtattaatttatttaatgctcaccattag
cctatgaagatatgctaatatctccattttacaggaaaggaaaccatatc
ccagaggaaaagaagtcagggaaaagggtagagaaagggatagtggggga
agaatgagcctttatgatgaacctctggctgggaagaacattggttcctg
taatagcaacttcttgcccagaacagaggtaactgcataattaactaata
caggtaaagaaactttggacgttgatacagacatatacctagtctcagat
tagctttacaattatgaatttttatatgatcccatgatccccttcaattg
cttgctatttgcagcataccccctccccaagtgtaatagaaagagtagga
atactagttaattaagaagtcggtggagctcatttctggctaattggcat
tttcctataaaatatttaaaaattaactctgatattcaaagactctcttt
tcagagagttatggtcatgtggctcttttcgccatgagtctccatctgca
ggtgaggtctcctatgttgaggtgatttgcgtgttttcacagatgctgtc
caggtacacatgttaaactggggagtggaaaggagagtcttcttgtgcat
cttttttttgttgttgttgtttaggtcatcccaatgtctttatttctttc
caaagaaagagaaaccagacagtgtgccagttctcctgcaggatgctacc
cagctaattctcttcttcaattgtaatgaacttgtactgttcaatcaaac
tcatagaatcacattttcaaagttagtgtgtgggcatttgccaaaaatcg
gcctcagactgtgtccccagaaggcttttctctctggctttgacagcccg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_50906212_50907383
seq2: B6Ng01-246D14.b_46_1235 (reverse)

seq1  GGGTC-ATGGAGA-ACAGGTGGGGCTTGGTACCA-TGAGA--GGCCAGGG  45
      ||||| ||||||| || |||||| |||||||||| |||||  ||||||| 
seq2  GGGTCAATGGAGAGACCGGTGGGACTTGGTACCATTGAGAAGGGCCAGGA  50

seq1  AAGGCCA-TTCGTG--AGGGTACA-GCTTCA-GCTGTTAATAGT-ACTAC  89
      | ||||| ||||||   ||||||| |||||| |||||| ||||| |||||
seq2  AGGGCCATTTCGTGGAGGGGTACAGGCTTCAGGCTGTT-ATAGTAACTAC  99

seq1  CAT-GAACAT-GAGTGCA-CATATATTT--GTTTTGA-GAAGTTTTTTTT  133
      ||| |||||| ||||||| |||||||||   |||||| ||||||||||||
seq2  CATGGAACATGGAGTGCACCATATATTTTGTTTTTGAGGAAGTTTTTTTT  149

seq1  TTCTTTTCTCTTTTCTTTTCTTTCCTTTTCTTTCC-TCTTTCTCTCTCTC  182
      ||| ||||||||||| ||||||||| ||||||||| || |||||||||||
seq2  TTC-TTTCTCTTTTC-TTTCTTTCC-TTTCTTTCCATCATTCTCTCTCTC  196

seq1  TCTCTCTCTCTCTCTTTCTTT-CTTTCTTTCTTTCTTTCC-TTCTTTCTT  230
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  TCTCTCTCTCTCTCTTTCTTTCCTTTCTTTCTTTCTTTCCATTCTTTCTT  246

seq1  TCTTCTTTTCTGTATATATAT-AGGAAATAAGTTTTTGTGTCATGGGAA-  278
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  TCTTCTTTTCTGTATATATATAAGGAAATAAGTTTTTGTGTCATGGGAAT  296

seq1  TTCCATGCCCATTTTTTCCTGGAATGATGAAATCATGTCCTCAATTCATG  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGCCCATTTTTTCCTGGAATGATGAAATCATGTCCTCAATTCATG  346

seq1  AGTCTCATTTTTTAAAAAATCATCTATCAAATTGTATGTGTAAAACACTC  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATTTTTTAAAAAATCATCTATCAAATTGTATGTGTAAAACACTC  396

seq1  TCCCTTAAAGTGCTGTCGAGGTTAATGAGCAGATGTTCATAGAGCACAAA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAAAGTGCTGTCGAGGTTAATGAGCAGATGTTCATAGAGCACAAA  446

seq1  GCCTCATGCCAGGCAAACACCTGATGCTCATCATTTGCATCAAATGTAAC  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGCCAGGCAAACACCTGATGCTCATCATTTGCATCAAATGTAAC  496

seq1  ATATTTATCCAACAGACTGTACACAAGACATGCAATAGCTGCATCTTCCT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATCCAACAGACTGTACACAAGACATGCAATAGCTGCATCTTCCT  546

seq1  TTTATTTTCTTTTCATTTATCAAGGAGTGAAAGTATAAAATTATGAATAA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCTTTTCATTTATCAAGGAGTGAAAGTATAAAATTATGAATAA  596

seq1  CCTTTACTTTCAGAGAAAATGGACCACATTTTAACTTGGCTCAAGAGAGC  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTTTCAGAGAAAATGGACCACATTTTAACTTGGCTCAAGAGAGC  646

seq1  CTGTAAAAGCAGAGACATTGTGTCCAGCATAAAAACTGTGATTATAGCAT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAAGCAGAGACATTGTGTCCAGCATAAAAACTGTGATTATAGCAT  696

seq1  GTATTTAAAGGATGGCAAGAACTCCTGTTTCCAGTTGTCACAATTCCTGA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAAGGATGGCAAGAACTCCTGTTTCCAGTTGTCACAATTCCTGA  746

seq1  CTTACTGCAAGAGATGTCCTGTACACACTGATGTTGGGTTGTGATGCAAG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCAAGAGATGTCCTGTACACACTGATGTTGGGTTGTGATGCAAG  796

seq1  CCACCACTTGTCATAGCTCATCACATCTGAACAAGTCCCAGATTGTCATG  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTTGTCATAGCTCATCACATCTGAACAAGTCCCAGATTGTCATG  846

seq1  CCCCTATTTTTTTTAAAAGAGAGAAAGGAAAATAAAGATTGAGACAGAAA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATTTTTTTTAAAAGAGAGAAAGGAAAATAAAGATTGAGACAGAAA  896

seq1  TAATAAAGAATTAAGTGAATAGATTAATACATAATACAGACAACATAAAA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGAATTAAGTGAATAGATTAATACATAATACAGACAACATAAAA  946

seq1  ACCCAAAACAAGCAAATGAAAATTGAAAGAGTTACCATTTAGATACCTCG  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAACAAGCAAATGAAAATTGAAAGAGTTACCATTTAGATACCTCG  996

seq1  TTTTAGTGAGAGATGACAAACCAGTAGGTTAATTGATCCAAAAATGGTTT  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGAGAGATGACAAACCAGTAGGTTAATTGATCCAAAAATGGTTT  1046

seq1  GGGGAAAGGCTGGAATACAGACTCCCTGGCAGAGAGCTGGCTAGGTCATT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGGCTGGAATACAGACTCCCTGGCAGAGAGCTGGCTAGGTCATT  1096

seq1  GGTAAGGACCACTGAGACATATGGTCTAATTTCCTAGATTTTAGGTGTTG  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGACCACTGAGACATATGGTCTAATTTCCTAGATTTTAGGTGTTG  1146

seq1  AAAAATACTAAAACAGCTCTGTTATTGGCCAAAGTGATGAATTC  1172
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACTAAAACAGCTCTGTTATTGGCCAAAGTGATGAATTC  1190

seq1: chr5_50774625_50775525
seq2: B6Ng01-246D14.g_66_966

seq1  GAATTCTTCCCAGAGCTATCTGTATTAATTTATTTAATGCTCACCATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCAGAGCTATCTGTATTAATTTATTTAATGCTCACCATTAG  50

seq1  CCTATGAAGATATGCTAATATCTCCATTTTACAGGAAAGGAAACCATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAAGATATGCTAATATCTCCATTTTACAGGAAAGGAAACCATATC  100

seq1  CCAGAGGAAAAGAAGTCAGGGAAAAGGGTAGAGAAAGGGATAGTGGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAAAAGAAGTCAGGGAAAAGGGTAGAGAAAGGGATAGTGGGGGA  150

seq1  AGAATGAGCCTTTATGATGAACCTCTGGCTGGGAAGAACATTGGTTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGCCTTTATGATGAACCTCTGGCTGGGAAGAACATTGGTTCCTG  200

seq1  TAATAGCAACTTCTTGCCCAGAACAGAGGTAACTGCATAATTAACTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCAACTTCTTGCCCAGAACAGAGGTAACTGCATAATTAACTAATA  250

seq1  CAGGTAAAGAAACTTTGGACGTTGATACAGACATATACCTAGTCTCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAGAAACTTTGGACGTTGATACAGACATATACCTAGTCTCAGAT  300

seq1  TAGCTTTACAATTATGAATTTTTATATGATCCCATGATCCCCTTCAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTACAATTATGAATTTTTATATGATCCCATGATCCCCTTCAATTG  350

seq1  CTTGCTATTTGCAGCATACCCCCTCCCCCAAGTGTAATAGAAAGAGTAGG  400
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTGCTATTTGCAGCATACCCCCT-CCCCAAGTGTAATAGAAAGAGTAGG  399

seq1  AATACTAGTTAATTAAGAAGTCGGTGGAGCTCATTTCTGGCTAATTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAGTTAATTAAGAAGTCGGTGGAGCTCATTTCTGGCTAATTGGCA  449

seq1  TTTTCCTATAAAATATTTAAAAATTAACTCTGATATTCAAAGACTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTATAAAATATTTAAAAATTAACTCTGATATTCAAAGACTCTCTT  499

seq1  TTCAGAGAGTTATGGTCATGTGGCTCTTTTCGCCATGAGTCTCCATCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAGTTATGGTCATGTGGCTCTTTTCGCCATGAGTCTCCATCTGC  549

seq1  AGGTGAGGTCTCCTATGTTGAGGTGATTTGCGTGTTTTCACAGATGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGTCTCCTATGTTGAGGTGATTTGCGTGTTTTCACAGATGCTGT  599

seq1  CCAGGTACACATGTTAAACTGGGGAGTGGAAAGGAGAGTCTTCTTGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACACATGTTAAACTGGGGAGTGGAAAGGAGAGTCTTCTTGTGCA  649

seq1  TCTTTTTTTTGTTGTTGTTGTTTAGGTCATCCCAATGTCTTTATTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTGTTGTTGTTGTTTAGGTCATCCCAATGTCTTTATTTCTTT  699

seq1  CCAAAGAAAGAGAAACCAGACAGTGTGCCAGTTCTCCTGCAGGATGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAAGAGAAACCAGACAGTGTGCCAGTTCTCCTGCAGGATGCTAC  749

seq1  CCAGCTAATTCTCTTCTTCAATTGTAATGAACTTGTACTGTTCAATCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAATTCTCTTCTTCAATTGTAATGAACTTGTACTGTTCAATCAAA  799

seq1  CTCATAGAATCACATTTTCAAAGTTAGTGTGTGGGCATTTGCCAAAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGAATCACATTTTCAAAGTTAGTGTGTGGGCATTTGCCAAAAATC  849

seq1  GGCCTCAGACTGTGTCCCCAGAAGGC-TTTCTCTCTGGCTTTGACAGCCA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  GGCCTCAGACTGTGTCCCCAGAAGGCTTTTCTCTCTGGCTTTGACAGCCC  899

seq1  GA  901
      ||
seq2  GA  901