BAC Information

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BAC

Clone NameB6Ng01-246D21
Chromosome5 (Build37)
Map Location 94,043,130 - 94,044,241
singlet/doubletsinglet
Overlap genenone
Upstream gene4932413O14Rik, Shroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909
Downstream geneC87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246D21.bB6Ng01-246D21.g
ACCGA054909GA054910
length1,099968
definitionB6Ng01-246D21.b B6Ng01-246D21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgccagggatagagcacagtagattctgcggtttggggagga
atggtttcagcatgatgctaggagcactgcccaggtgcctttcatcttct
gttccatgctcaaaaagagtagaagaatggagagcctggcaggttttgtt
gtttgcttgtctgtttgtttggttttgtgacttctgtctttagtcaaagg
tttcctctggacttggctgaggctgaggtcctgctaataagccctattct
ctggccttgaaacttttagccccttgctggtctgtgtcttgagattacaa
gctccccagatgaatcatttttaataatgaaagctactatttgtaagtgg
ccatttgatctttttctggttgcttgctgccctctaccacctatgcaggt
gtagtagctgaatcacagttgtacccttagtatttagccattcacatctt
cctagcccacacagtttctttctatttttaaccctgagcctccacagtaa
aatcttggaatgaacaattttgagcatcagagcaaaaccagctttttgcc
caagccagaagcagcaattttcttccctgcttggcagttgccctcaaaag
gcaggggccagagactacagacttggaatccaaagaaactgttgagcgtg
gcttttccatttgattttctctagaaattgggctttcataggacactggc
cacatctagggtgggtcatcaaccattgcaaatctagaatctctctacca
gatgtgcctagagagtaaaatcaggggtcacttcagtattactacttcca
gggaggcagcatcaaccacagcagatccctgtgacagtacagaacaaaga
tcagttgccttcagtccagggcacatcttggaaagttttgtcagcaacaa
gtttgggaacaaactgtatttaagactagggttcaccataaggagccact
ggccttctctatattgcttcctctctcttgctataggtgctagaactctc
aacttcagaggttcttaattgtactatctcactataagtcagatatgaga
tctttctatattgacccagatccattttcaaggctgcttagtgaaacag
gaattcttagaggagactttaaaagccataatggactggggagatgtctt
acagtctctaagagatcacaggtaccagcccagactattatacccagcaa
aactttcaatcatcatggacagagaagacaagatactccattacaaaacc
caatttaaacaatattttctagtaatccagctctacagaggatactaaaa
gaataactgaaactggaggaggataattacacccaagaaataattctaca
tcaaaaaaacaacacacacacacacatcatcaccaccatcaaaatatcag
gaattaatattcactggtgattaatgtctctcaatatctatgtactcaat
ttacttttttttttccattttttattaggtatttaactcatttacatttc
caatgctataccaaaagccccccatatccacccacccccactcccctgcc
caccgactccccctttttggccctggtgttcccctgtactggggcatata
aagtttgcaagtccaatgggcctctctttccagtgatggccgactaggcc
atcttttgatatatatgcagctagagtcaagagctccggggtactggtta
gttcataatgttgttccacctataaggttgcagatccctttagctccttg
gctactttctctagctcctccattgggagccctgtgatccatccattagc
tgactgtgagcatccacttctgtgtttgctaggccccggcatagtctcac
aagagacagctacatctgggtcctttcgataaaatcttgctagtgtatgc
aatggtgtcagcgtttggatgctgattatggggtggatccctggatatgg
gcagtctctacatggtccatcctttcatctcagctccaaactccgtctct
gtaactccttccatgggtgttttgttcccaaatctaagaggggcatagtg
tccacacttcaagtcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_94043130_94044241
seq2: B6Ng01-246D21.b_43_1141 (reverse)

seq1  CTGTTTCACCTAGGCAGCCTTGGAAAATGGGATCTGGGGTTCAATATAGG  50
      |||||||| ||| |||||||| |||||| |||||||||  ||||||||| 
seq2  CTGTTTCA-CTAAGCAGCCTT-GAAAAT-GGATCTGGG--TCAATATAG-  44

seq1  AAAAGATCTCAATATCCTGACTTAATTAGTGAGATAGTACAATTTAAGAA  100
       ||||||||| |||| ||||||||  |||||||||||||||| |||||||
seq2  -AAAGATCTC-ATAT-CTGACTTA--TAGTGAGATAGTACAA-TTAAGAA  88

seq1  CCTCTGAAGTTGAGAGTTCTAGCACCCTATAGCAAGAGAGAGGAAGCAAT  150
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTCTGAAGTTGAGAGTTCTAGCA-CCTATAGCAAGAGAGAGGAAGCAAT  137

seq1  ATAGAGAAGGCCAGTGGCTCCTTATGGTGAACCCTAGTCTTAAATACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAGGCCAGTGGCTCCTTATGGTGAACCCTAGTCTTAAATACAGT  187

seq1  TTGTTCCCAAACTTGTTGCTGACAAAACTTTCCAAGATGTGCCCTGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCAAACTTGTTGCTGACAAAACTTTCCAAGATGTGCCCTGGACT  237

seq1  GAAGGCAACTGATCTTTGTTCTGTACTGTCACAGGGATCTGCTGTGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAACTGATCTTTGTTCTGTACTGTCACAGGGATCTGCTGTGGTTG  287

seq1  ATGCTGCCTCCCTGGAAGTAGTAATACTGAAGTGACCCCTGATTTTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCTCCCTGGAAGTAGTAATACTGAAGTGACCCCTGATTTTACTC  337

seq1  TCTAGGCACATCTGGTAGAGAGATTCTAGATTTGCAATGGTTGATGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCACATCTGGTAGAGAGATTCTAGATTTGCAATGGTTGATGACCC  387

seq1  ACCCTAGATGTGGCCAGTGTCCTATGAAAGCCCAATTTCTAGAGAAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGATGTGGCCAGTGTCCTATGAAAGCCCAATTTCTAGAGAAAATC  437

seq1  AAATGGAAAAGCCACGCTCAACAGTTTCTTTGGATTCCAAGTCTGTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAAAGCCACGCTCAACAGTTTCTTTGGATTCCAAGTCTGTAGTC  487

seq1  TCTGGCCCCTGCCTTTTGAGGGCAACTGCCAAGCAGGGAAGAAAATTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCCCTGCCTTTTGAGGGCAACTGCCAAGCAGGGAAGAAAATTGCT  537

seq1  GCTTCTGGCTTGGGCAAAAAGCTGGTTTTGCTCTGATGCTCAAAATTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGCTTGGGCAAAAAGCTGGTTTTGCTCTGATGCTCAAAATTGTT  587

seq1  CATTCCAAGATTTTACTGTGGAGGCTCAGGGTTAAAAATAGAAAGAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAAGATTTTACTGTGGAGGCTCAGGGTTAAAAATAGAAAGAAACT  637

seq1  GTGTGGGCTAGGAAGATGTGAATGGCTAAATACTAAGGGTACAACTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGCTAGGAAGATGTGAATGGCTAAATACTAAGGGTACAACTGTGA  687

seq1  TTCAGCTACTACACCTGCATAGGTGGTAGAGGGCAGCAAGCAACCAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTACTACACCTGCATAGGTGGTAGAGGGCAGCAAGCAACCAGAAA  737

seq1  AAGATCAAATGGCCACTTACAAATAGTAGCTTTCATTATTAAAAATGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAAATGGCCACTTACAAATAGTAGCTTTCATTATTAAAAATGATT  787

seq1  CATCTGGGGAGCTTGTAATCTCAAGACACAGACCAGCAAGGGGCTAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGGGAGCTTGTAATCTCAAGACACAGACCAGCAAGGGGCTAAAAG  837

seq1  TTTCAAGGCCAGAGAATAGGGCTTATTAGCAGGACCTCAGCCTCAGCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGCCAGAGAATAGGGCTTATTAGCAGGACCTCAGCCTCAGCCAA  887

seq1  GTCCAGAGGAAACCTTTGACTAAAGACAGAAGTCACAAAACCAAACAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGGAAACCTTTGACTAAAGACAGAAGTCACAAAACCAAACAAAC  937

seq1  AGACAAGCAAACAACAAAACCTGCCAGGCTCTCCATTCTTCTACTCTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCAAACAACAAAACCTGCCAGGCTCTCCATTCTTCTACTCTTTT  987

seq1  TGAGCATGGAACAGAAGATGAAAGGCACCTGGGCAGTGCTCCTAGCATCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGGAACAGAAGATGAAAGGCACCTGGGCAGTGCTCCTAGCATCA  1037

seq1  TGCTGAAACCATTCCTCCCCAAACCGCAGAATCTACTGTGCTCTATCCCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAACCATTCCTCCCCAAACCGCAGAATCTACTGTGCTCTATCCCT  1087

seq1  GGCATGGAATTC  1112
      ||||||||||||
seq2  GGCATGGAATTC  1099