BAC Information

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BAC

Clone NameB6Ng01-246H19
Chromosome5 (Build37)
Map Location 35,301,335 - 35,302,514
singlet/doubletsinglet
Overlap geneRgs12
Upstream geneGm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik
Downstream geneHgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246H19.bB6Ng01-246H19.g
ACCGA055090GA055091
length5491,163
definitionB6Ng01-246H19.b B6Ng01-246H19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgtttagctctgaaccccatttttaatggggttatttgaatttctgga
gtccaccttcttgagctatttgtatatattggatattagtcccctatcag
atttaagattggtaaaaattctttcccaatctgttggtggcctttttgtc
ttattgacagtatcttttgccttacagaagctttgtaattttatggggtc
ccatttgtcaatgctctatcttacagcacaagccattgctgttctgttta
ggaatttttcccctctgcccatatcttcgaggcttttctctactttctcc
tctattaatttcagtgtctctggtcttatgtagaggtctttgattcactt
agacttgagctttgtacaaggaaataagaatggatcaattctccaatgct
catggattggcaggatcaacattgtaaaaatggctatcttgccaaaagca
atctatagattcaatgtaatccccatcaaaattccaactcaattcttcaa
cgaattggaaagggcaatctgcaaattcatctggaataacaaaaaacct
gaattctcttcaggaaaccctggccacaactgaaattgaagccaggtgcc
agcatttagtaaaacgtctggccttgtttgactttttaaagagggaagag
ctaagaaaaagaaactcagagaataatgatagaagtcctgtagctatcaa
aagaaagggacctcccaaacccctgccccactctgcaactcaagggacat
gggctgttgtgttaagacaactcggcaagggaccccactatctctatcca
gtcttcaaatgagcaggcccggatcctgggagagagtaacaggacaatgg
tgggttaactggtttaaaagttagtgggtcgttccccagagccaaagaca
gacacggagctgtgagctcaaaagttgagcagcagagaacagaacccagc
agagcggaaggacaagaatgtgccatggacaacacttctgagcagacaca
gagcacttcagcaggccatacctgagtgatcacaaaccccatgcccagcc
cactaacaccacgggctggccagtcctcacaggaggcacctgtgtggatg
agcatggctttgcccattcctaaggcggaaacctgtggtgactggaggat
ggtggccagaaagggcagcacctccatctcatctccccatgctggctccc
acatgagcatcttcctgctcggattactgccatcactggcttgtctctat
ctgccaaggatcatcatctgtactgaaaggcacagctcacttgggtcact
gtagggaaacccagcccaatgtccttacacaggcatcagcagagaggtgg
ccagatttctcagccaactcatggccattccttagaaacactaaacacat
tggtgcactgtgtatactgtccccgggtcggcccaatttgagacagttca
gtcaaggatgtgagcaccaagaaaccaatagacactcataattctctaca
aatcctggcaagcgcatcatctgcctggatgtccctagtatcctagtggg
cgtgctggaacccaaatgccccaggaaaggtcagtacccccatctgccct
gtctgaacattctctccctttcagaggctgttctgattgccagcatgcct
tactgccttccgggctccctcaacagtcctaataaaacaaggagcaggcc
tgctgttgtccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_35301335_35302514
seq2: B6Ng01-246H19.g_68_1230 (reverse)

seq1  TGGGACAGATGTGGGCACAGCA-GCCTGCTCCTTGTTTTATTAGAGCTGT  49
      |||||||         |||||| |||||||||||||||||||||  ||||
seq2  TGGGACA---------ACAGCAGGCCTGCTCCTTGTTTTATTAGGACTGT  41

seq1  TTGAGGAGCCCCCGGAAAGCCAGGTAGGGCATGCTGCCCATCAAGACAGC  99
      |   ||||  ||||||| ||   ||| ||||||||| | ||||  |||||
seq2  TGAGGGAG--CCCGGAAGGC--AGTAAGGCATGCTGGCAATCAGAACAGC  87

seq1  CTTCTGAAAGGGAAGAGAAGTGTTCAGACA-GGCAGATTGGGGGTACTTG  148
      | |||||||||| |||||| |||||||||| |||||| ||||||||||  
seq2  C-TCTGAAAGGG-AGAGAA-TGTTCAGACAGGGCAGA-TGGGGGTACTGA  133

seq1  ACTTTCCTGGGGCATTTGGGTTCCAGCCACGCCCCACTAGGATACTAGGG  198
       ||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  CCTTTCCTGGGGCATTTGGGTTCCAG-CACG-CCCACTAGGATACTAGGG  181

seq1  ACATCCAGGCAGATGATGCGCTTGCCAGGATTTGTAGAGAATTATGAGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAGGCAGATGATGCGCTTGCCAGGATTTGTAGAGAATTATGAGTG  231

seq1  TCTATTGGTTTCTTGGTGCTCACATCCTTGACTGAACTGTCTCAAATTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGGTTTCTTGGTGCTCACATCCTTGACTGAACTGTCTCAAATTGG  281

seq1  GCCGACCCGGGGACAGTATACACAGTGCACCAATGTGTTTAGTGTTTCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACCCGGGGACAGTATACACAGTGCACCAATGTGTTTAGTGTTTCTA  331

seq1  AGGAATGGCCATGAGTTGGCTGAGAAATCTGGCCACCTCTCTGCTGATGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGCCATGAGTTGGCTGAGAAATCTGGCCACCTCTCTGCTGATGC  381

seq1  CTGTGTAAGGACATTGGGCTGGGTTTCCCTACAGTGACCCAAGTGAGCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAAGGACATTGGGCTGGGTTTCCCTACAGTGACCCAAGTGAGCTG  431

seq1  TGCCTTTCAGTACAGATGATGATCCTTGGCAGATAGAGACAAGCCAGTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCAGTACAGATGATGATCCTTGGCAGATAGAGACAAGCCAGTGA  481

seq1  TGGCAGTAATCCGAGCAGGAAGATGCTCATGTGGGAGCCAGCATGGGGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTAATCCGAGCAGGAAGATGCTCATGTGGGAGCCAGCATGGGGAG  531

seq1  ATGAGATGGAGGTGCTGCCCTTTCTGGCCACCATCCTCCAGTCACCACAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGGAGGTGCTGCCCTTTCTGGCCACCATCCTCCAGTCACCACAG  581

seq1  GTTTCCGCCTTAGGAATGGGCAAAGCCATGCTCATCCACACAGGTGCCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCGCCTTAGGAATGGGCAAAGCCATGCTCATCCACACAGGTGCCTC  631

seq1  CTGTGAGGACTGGCCAGCCCGTGGTGTTAGTGGGCTGGGCATGGGGTTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGACTGGCCAGCCCGTGGTGTTAGTGGGCTGGGCATGGGGTTTG  681

seq1  TGATCACTCAGGTATGGCCTGCTGAAGTGCTCTGTGTCTGCTCAGAAGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACTCAGGTATGGCCTGCTGAAGTGCTCTGTGTCTGCTCAGAAGTG  731

seq1  TTGTCCATGGCACATTCTTGTCCTTCCGCTCTGCTGGGTTCTGTTCTCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATGGCACATTCTTGTCCTTCCGCTCTGCTGGGTTCTGTTCTCTG  781

seq1  CTGCTCAACTTTTGAGCTCACAGCTCCGTGTCTGTCTTTGGCTCTGGGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAACTTTTGAGCTCACAGCTCCGTGTCTGTCTTTGGCTCTGGGGA  831

seq1  ACGACCCACTAACTTTTAAACCAGTTAACCCACCATTGTCCTGTTACTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCCACTAACTTTTAAACCAGTTAACCCACCATTGTCCTGTTACTCT  881

seq1  CTCCCAGGATCCGGGCCTGCTCATTTGAAGACTGGATAGAGATAGTGGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGATCCGGGCCTGCTCATTTGAAGACTGGATAGAGATAGTGGGG  931

seq1  TCCCTTGCCGAGTTGTCTTAACACAACAGCCCATGTCCCTTGAGTTGCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCCGAGTTGTCTTAACACAACAGCCCATGTCCCTTGAGTTGCAG  981

seq1  AGTGGGGCAGGGGTTTGGGAGGTCCCTTTCTTTTGATAGCTACAGGACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGCAGGGGTTTGGGAGGTCCCTTTCTTTTGATAGCTACAGGACTT  1031

seq1  CTATCATTATTCTCTGAGTTTCTTTTTCTTAGCTCTTCCCTCTTTAAAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTATTCTCTGAGTTTCTTTTTCTTAGCTCTTCCCTCTTTAAAAA  1081

seq1  GTCAAACAAGGCCAGACGTTTTACTAAATGCTGGCACCTGGCTTCAATTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACAAGGCCAGACGTTTTACTAAATGCTGGCACCTGGCTTCAATTT  1131

seq1  CAGTTGTGGCCAGGGTTTCCTGAAGAGAATTC  1180
      ||||||||||||||||||||||||||||||||
seq2  CAGTTGTGGCCAGGGTTTCCTGAAGAGAATTC  1163