BAC Information

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BAC

Clone NameB6Ng01-246J20
Chromosome5 (Build37)
Map Location 80,579,994 - 80,670,351
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246J20.bB6Ng01-246J20.g
ACCGA055183GA055184
length1,1521,169
definitionB6Ng01-246J20.b B6Ng01-246J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,669,200 - 80,670,351)(80,579,994 - 80,581,173)
sequence
gaattccaggttcggttatttttattaggtagataagaatggaaaatgac
cctgtctatgacaaaattattctacatgatgaaaaaggtctttttcccat
atatcatgagaattttttctttttaatctaaatcatggaaatagaaacaa
ttttgtaattttaaaataacatatgttatcatggtttgaccaaaattatg
ttgatatttacctaaatcttttcctaaggtgaataatcagctgaatattg
aagggggcatactctcgatagccttctatgctgtctaagcattttgatct
ctgcacatagtaccaggtttggtctttctgtttactcaaatttttctgtt
ttactatgggtgcccactaaattctcacagagctcaatctccttggatac
caattggaaattctattcacatgaatttataaggcttatctcattggttt
ctcttttttagaggatgataaagtgtctgaaacatgactgacttcttaat
cattgcttcctgtaattaatccgttgaagtattttggtcattaaagtgag
ccaggcttctcttcttaccttgaacaaagtagaattcatactcaaagatt
ttgatttttattaaaactttgaacttatcagtttatactattaggaactg
acatttttcttagcttatcaatattcaactgttttcccttctaatacatt
tatggacaatgcatttaatttggctagaaatgatggctcagctcttaaca
ggaactttttcacatatattataatcattattaattattattgatgttgt
cataatggcataccatccatctcattaatacctatcagaaaactcggtat
cataattgacacctcctatctttcatcaagctaactcatttgttacctaa
gttagtcaatttctgtcatgtacttcttcagatatattcactcatctcaa
cgttccagaaaatctgccaccacatatacttttgatttaaacagttaatt
atccttttctcatctatgagagcttaagctatcaatgggttattcagctt
taaatcagtacttatagtttagaatagatgaattgtgatgtaccacccta
actttatttggtttagcttgtccggacttgttcatccctcttaaggaaaa
ga
gaattcaaactaggttattcagaataagtttagtcaaagaacaagacaca
agcttaagatgcagttattccactttgttacttttaaaagttttatgcaa
tgttctacttgcaaaaggccctagtgtaacgattttctcccatatctaag
tctgtgagaattttctagactttgagtgtgcatatttctgtgtggattgt
atatatgtgtgcaagtgcatatgttcaagtctgtctatgtgaacatagag
ggcagagggtgatgtcaagattattctttttgcacttatataagaaatga
tattaacttaatattgtaatgccaatgcaaagggcatttatgtaaaaaga
tttaatcaccaactctttttatattgcatacttatatttcataaaaactt
tagaacaaaccaacaccaatatttttcatcttactagttcaattttcatg
agaaatattgtatttcacttttgttaataaacatgtttcacaactcatct
gcttttttatatccacttttctaaaggactgcaattaaaggagtgaattt
atctttttctgtataagtacccagctttgtcaagcatctgcaggttctca
cagtgcaataccatccttatcactcacccagataatattacatatcatat
ttacagattaaccttcacattcccttttatgcatttgtctagatacggtt
cttttaagaaggaaactggatgtacattcatgaagatttagggtgcacat
tatattaaggcattccacttctgtgatctcctgttttttactttcaaaat
cacattcaacttctagaatgaaatttagaaatattcctaaagcttaaact
gacactgtgatttttttgtatattaataatttatttgtggcatgtggtat
ccttatttcctttgtctagttctgggctttcactttgggcccaagagcct
tgtaggacactagagcatcagctacctgtggaatccaagaataaccaact
cagaactgttctatattccatccagtgggactgctgtgacatagcaggca
aagatggatgaaatgctggtccttgaacttccattgttcattctagaatc
attccttgattccaggacttgttagatttctcactcctcaggaaacctct
ctacgagtgctccaacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80669200_80670351
seq2: B6Ng01-246J20.b_45_1196 (reverse)

seq1  TCTTTTCC-TAAGA-GGATGAACAAGT-CTGAC-AGCTAAACCAAATTAA  46
      |||||||| ||||| |||||||||||| | ||| ||||||||||||| ||
seq2  TCTTTTCCTTAAGAGGGATGAACAAGTCCGGACAAGCTAAACCAAATAAA  50

seq1  AGTAAGGTGTTAACATCACAA-TCATCCTATTCTAAAACTAT-AGTACTG  94
        || |||| | ||||||||| |||| ||||||| ||||||| |||||||
seq2  GTTAGGGTGGT-ACATCACAATTCAT-CTATTCT-AAACTATAAGTACTG  97

seq1  ATTAAAGCCTGAATAA-CCATTGATAGCTTAAAGCTCTCATAGATGAGAA  143
      ||| ||  |||||||| ||||||||||||| |||||||||||||||||||
seq2  ATTTAAAGCTGAATAACCCATTGATAGCTT-AAGCTCTCATAGATGAGAA  146

seq1  AAGGATAATTAACTGTTTAAATCAAAAGTATATGTGGTGGCAGATTTTTC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AAGGATAATTAACTGTTTAAATCAAAAGTATATGTGGTGGCAGATTTT--  194

seq1  TTGGAACGTTGAGATGAGTGAATATATCTTGAAGAAGTACATGACAGAAA  243
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGGAACGTTGAGATGAGTGAATATATC-TGAAGAAGTACATGACAGAAA  243

seq1  TTGACTAACTTAGGTAACAAATGAGTTAGCTTGATGAAAGATAGGAGGTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAACTTAGGTAACAAATGAGTTAGCTTGATGAAAGATAGGAGGTG  293

seq1  TCAATTATGATACCGAGTTTTCTGATAGGTATTAATGAGATGGATGGTAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTATGATACCGAGTTTTCTGATAGGTATTAATGAGATGGATGGTAT  343

seq1  GCCATTATGACAACATCAATAATAATTAATAATGATTATAATATATGTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTATGACAACATCAATAATAATTAATAATGATTATAATATATGTGA  393

seq1  AAAAGTTCCTGTTAAGAGCTGAGCCATCATTTCTAGCCAAATTAAATGCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCCTGTTAAGAGCTGAGCCATCATTTCTAGCCAAATTAAATGCA  443

seq1  TTGTCCATAAATGTATTAGAAGGGAAAACAGTTGAATATTGATAAGCTAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATAAATGTATTAGAAGGGAAAACAGTTGAATATTGATAAGCTAA  493

seq1  GAAAAATGTCAGTTCCTAATAGTATAAACTGATAAGTTCAAAGTTTTAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGTCAGTTCCTAATAGTATAAACTGATAAGTTCAAAGTTTTAAT  543

seq1  AAAAATCAAAATCTTTGAGTATGAATTCTACTTTGTTCAAGGTAAGAAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAAAATCTTTGAGTATGAATTCTACTTTGTTCAAGGTAAGAAGA  593

seq1  GAAGCCTGGCTCACTTTAATGACCAAAATACTTCAACGGATTAATTACAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGGCTCACTTTAATGACCAAAATACTTCAACGGATTAATTACAG  643

seq1  GAAGCAATGATTAAGAAGTCAGTCATGTTTCAGACACTTTATCATCCTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATGATTAAGAAGTCAGTCATGTTTCAGACACTTTATCATCCTCT  693

seq1  AAAAAAGAGAAACCAATGAGATAAGCCTTATAAATTCATGTGAATAGAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAGAAACCAATGAGATAAGCCTTATAAATTCATGTGAATAGAAT  743

seq1  TTCCAATTGGTATCCAAGGAGATTGAGCTCTGTGAGAATTTAGTGGGCAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTGGTATCCAAGGAGATTGAGCTCTGTGAGAATTTAGTGGGCAC  793

seq1  CCATAGTAAAACAGAAAAATTTGAGTAAACAGAAAGACCAAACCTGGTAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTAAAACAGAAAAATTTGAGTAAACAGAAAGACCAAACCTGGTAC  843

seq1  TATGTGCAGAGATCAAAATGCTTAGACAGCATAGAAGGCTATCGAGAGTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCAGAGATCAAAATGCTTAGACAGCATAGAAGGCTATCGAGAGTA  893

seq1  TGCCCCCTTCAATATTCAGCTGATTATTCACCTTAGGAAAAGATTTAGGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCTTCAATATTCAGCTGATTATTCACCTTAGGAAAAGATTTAGGT  943

seq1  AAATATCAACATAATTTTGGTCAAACCATGATAACATATGTTATTTTAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAACATAATTTTGGTCAAACCATGATAACATATGTTATTTTAAA  993

seq1  ATTACAAAATTGTTTCTATTTCCATGATTTAGATTAAAAAGAAAAAATTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAATTGTTTCTATTTCCATGATTTAGATTAAAAAGAAAAAATTC  1043

seq1  TCATGATATATGGGAAAAAGACCTTTTTCATCATGTAGAATAATTTTGTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATATATGGGAAAAAGACCTTTTTCATCATGTAGAATAATTTTGTC  1093

seq1  ATAGACAGGGTCATTTTCCATTCTTATCTACCTAATAAAAATAACCGAAC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGGGTCATTTTCCATTCTTATCTACCTAATAAAAATAACCGAAC  1143

seq1  CTGGAATTC  1152
      |||||||||
seq2  CTGGAATTC  1152

seq1: chr5_80579994_80581173
seq2: B6Ng01-246J20.g_67_1235

seq1  GAATTCAAACTAGGTTATTCAGAATAAGTTTAGTCAAAGAACAAGACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTAGGTTATTCAGAATAAGTTTAGTCAAAGAACAAGACACA  50

seq1  AGCTTAAGATGCAGTTATTCCACTTTGTTACTTTTAAAAGTTTTATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAGATGCAGTTATTCCACTTTGTTACTTTTAAAAGTTTTATGCAA  100

seq1  TGTTCTACTTGCAAAAGGCCCTAGTGTAACGATTTTCTCCCATATCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTACTTGCAAAAGGCCCTAGTGTAACGATTTTCTCCCATATCTAAG  150

seq1  TCTGTGAGAATTTTCTAGACTTTGAGTGTGCATATTTCTGTGTGGATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGAATTTTCTAGACTTTGAGTGTGCATATTTCTGTGTGGATTGT  200

seq1  ATATATGTGTGCAAGTGCATATGTTCAAGTCTGTCTATGTGAACATAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGTGCAAGTGCATATGTTCAAGTCTGTCTATGTGAACATAGAG  250

seq1  GGCAGAGGGTGATGTCAAGATTATTCTTTTTGCACTTATATAAGAAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGGTGATGTCAAGATTATTCTTTTTGCACTTATATAAGAAATGA  300

seq1  TATTAACTTAATATTGTAATGCCAATGCAAAGGGCATTTATGTAAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACTTAATATTGTAATGCCAATGCAAAGGGCATTTATGTAAAAAGA  350

seq1  TTTAATCACCAACTCTTTTTATATTGCATACTTATATTTCATAAAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCACCAACTCTTTTTATATTGCATACTTATATTTCATAAAAACTT  400

seq1  TAGAACAAACCAACACCAATATTTTTCATCTTACTAGTTCAATTTTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAACCAACACCAATATTTTTCATCTTACTAGTTCAATTTTCATG  450

seq1  AGAAATATTGTATTTCACTTTTGTTAATAAACATGTTTCACAACTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTGTATTTCACTTTTGTTAATAAACATGTTTCACAACTCATCT  500

seq1  GCTTTTTTATATCCACTTTTCTAAAGGACTGCAATTAAAGGAGTGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTATATCCACTTTTCTAAAGGACTGCAATTAAAGGAGTGAATTT  550

seq1  ATCTTTTTCTGTATAAGTACCCAGCTTTGTCAAGCATCTGCAGGTTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCTGTATAAGTACCCAGCTTTGTCAAGCATCTGCAGGTTCTCA  600

seq1  CAGTGCAATACCATCCTTATCACTCACCCAGATAATATTACATATCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAATACCATCCTTATCACTCACCCAGATAATATTACATATCATAT  650

seq1  TTACAGATTAACCTTCACATTCCCTTTTATGCATTTGTCTAGATACGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATTAACCTTCACATTCCCTTTTATGCATTTGTCTAGATACGGTT  700

seq1  CTTTTAAGAAGGAAACTGGATGTACATTCATGAAGATTTAGGGTGCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGAAGGAAACTGGATGTACATTCATGAAGATTTAGGGTGCACAT  750

seq1  TATATTAAGGCATTCCACTTCTGTGATCTCCTGTTTTTTACTTTCAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAGGCATTCCACTTCTGTGATCTCCTGTTTTTTACTTTCAAAAT  800

seq1  CACATTCAACTTCTAGAATGAAATTTAGAAATATTCCTAAAGCTTAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCAACTTCTAGAATGAAATTTAGAAATATTCCTAAAGCTTAAACT  850

seq1  GACACTGTGATTTTTTTGTATATTAATAATTTATTTGTGGGCATGTGGTA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GACACTGTGATTTTTTTGTATATTAATAATTTATTTGT-GGCATGTGGTA  899

seq1  TCCTTATTTCCTTTGTCTAGTTCTGGGCTTTCACTTTGGCCCAAAGAGCC  950
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  TCCTTATTTCCTTTGTCTAGTTCTGGGCTTTCACTTTGGGCCCAAGAGCC  949

seq1  TTGTAGGACACTAGGAGCATCAGGCTACCCTGTGGAATCCAAGAATAACC  1000
      ||||||||||||| |||||||| |||| ||||||||||||||||||||||
seq2  TTGTAGGACACTA-GAGCATCA-GCTA-CCTGTGGAATCCAAGAATAACC  996

seq1  AACTCAGGAAACCTGTTCTATTAATCCCATCCAGTTGGGACTGCGTGTGA  1050
      |||||||   | |||||||||  || |||||||| ||||||||| |||||
seq2  AACTCAG---AACTGTTCTAT--ATTCCATCCAG-TGGGACTGC-TGTGA  1039

seq1  CATAGCAGGCAGAGATGAGTTGAATGCTGTCCCTGGAAC-TCCATTGTCC  1099
      ||||||||||| |||||  |  |||||||  ||| |||| |||||||| |
seq2  CATAGCAGGCAAAGATGGATGAAATGCTGGTCCTTGAACTTCCATTGTTC  1089

seq1  AATTCTAGGATCATTCTTTGATTCCAAGGAGCTTTGTAGGATTTCTACTT  1149
       ||||||| ||||||| |||||||| ||||   ||||  |||||||   |
seq2  -ATTCTAGAATCATTCCTTGATTCC-AGGA--CTTGTTAGATTTCTCACT  1135

seq1  CCTCAGGGAAAC---CTTCAGGTGCTCCAACACT  1180
      ||||||| || |   || |  |||||||||||||
seq2  CCTCAGGAAACCTCTCTACGAGTGCTCCAACACT  1169